Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

19386045 .. 19388587

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATGGAAGATTAAGAAGCTGATCAAATCACTTGAAGCTGCTAGGGGTAATGGAACCAGCATGATCTCACTCATCATGCCTCCGCGTGATCAGGTCTCTCGTGTTACCAAGATGTTGGGTGATGAGTATGGAACCGCGTCAAACATCAAGAGCAGAGTCAATCGTCAATCTGTTTTGGGGGCCATAACTTCTGCTCAGCAAAGGTTGAAACTTTACAACAGGGTCCCTCCTAATGGTCTTGTACTCTATACTGGAACCATTGTTAATGAGGATGGTAAGGAGAAGAAGGTTACTATTGACTTTGAGCCTTTCAGACCCATCAATGCTTCTCTCTACCTTTGTGACAACAAGTTTCACACGGAAGCTTTGAATGAATTGTTGGAGTCTGATGACAAGTTTGGTTTCATTGTAATGGATGGAAACGGGACTCTCTTTGGAACTCTTAGTGGTAACACCCGTGAGGTACTTCACAAGTTCTCTGTTGATCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTATGGAGAAGCGTCACAATTATGTTAGGAAGACTGCTGAGCTCGCCACACAGTACTACATCAATCCTGCTACAAGTCAGCCTAATGTGTCTGGACTGATTCTTGCTGGTTCAGCAGATTTCAAGACTGAGTTGAGTCAGTCTGATATGTTTGATCCCCGACTGGCTGCGAAGATACTGAATGTGGTGGATGTATCATATGGAGGAGAAAATGGTTTTAATCAAGCTATTGAGCTGTCAGCTGAAATCCTTGCGAATGTGAAGTTTATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGAGATAAGCCAGGACACGGGGAAGTATGTGTTTGGTGTGGAAGATACGTTGAACGCTTTGGAGTCTGGTGCTATTGAGACACTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGATGAAGAACAGTGCGACTGGTGAAACTGTGATCAAACACCTGAACAAGGAACAAGAAGCCAACACTGAGAACTTCAAAGTAGCCGACAGTGACTTGGCTTTGGACGTGGAGGAGAAGCTGTCGTTACTGGAGTGGCTTGCCAATGAGTACAGGCGTTTTGGTTGTGCGTTAGAGTTTGTGACCAACAAGTCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATACTTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGAAGCTCTTGATGATGATTCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

436

Amino Acids

48.72

Weight (kDa)

5.19

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	8.5e-53	eRF1 domain 1
eRF1_2	PF03464	144 - 277	9e-43	eRF1 domain 2
eRF1_3	PF03465	281 - 418	2.1e-32	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1186
AccII	CGCG	2 cut(s)	121, 173
AciI	CCGC	2 cut(s)	119, 171
AclWI	GGATC	1 cut(s)	725
AfaI	GTAC	5 cut(s)	279, 501, 632, 872, 1148
AfiI	CCNNNNNNNGG	3 cut(s)	269, 895, 1045
AgsI	TTSAA	6 cut(s)	71, 244, 406, 700, 931, 1075
AjiI	CACGTC	1 cut(s)	1105
AjnI	CCWGG	1 cut(s)	888
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	3 cut(s)	136, 578, 950
AlwI	GGATC	1 cut(s)	725
AoxI	GGCC	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	74, 743
AspS9I	GGNCC	2 cut(s)	216, 259
AsuHPI	GGTGA	2 cut(s)	167, 1031
AvaII	GGWCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	621
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	61, 730
BccI	CCATC	4 cut(s)	302, 362, 446, 1274
BciT130I	CCWGG	1 cut(s)	890
BclI	TGATCA	3 cut(s)	57, 124, 1029
BcoDI	GTCTC	3 cut(s)	136, 578, 950
BfaI	CTAG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	75, 744
BlpI	GCTNAGC	2 cut(s)	231, 615
BlsI	GCNGC	2 cut(s)	76, 745
BmcAI	AGTACT	2 cut(s)	632, 872
Bme1390I	CCNGG	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	1105
BmgT120I	GGNCC	2 cut(s)	216, 259
BmiI	GGNNCC	6 cut(s)	91, 169, 217, 260, 261, 292
BmrFI	CCNGG	1 cut(s)	890
BpiI	GAAGAC	1 cut(s)	614
BpmI	CTGGAG	1 cut(s)	1148
Bpu1102I	GCTNAGC	2 cut(s)	231, 615
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	1275
BsaXI	ACNNNNNCTCC	2 cut(s)	1103, 1133
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 895, 1045
Bse1I	ACTGG	4 cut(s)	292, 744, 1021, 1131
BseBI	CCWGG	1 cut(s)	890
BseDI	CCNNGG	1 cut(s)	1275
BseGI	GGATG	4 cut(s)	313, 457, 772, 1285
BseLI	CCNNNNNNNGG	3 cut(s)	269, 895, 1045
BseMII	CTCAG	5 cut(s)	245, 606, 696, 1056, 1217
BseNI	ACTGG	4 cut(s)	292, 744, 1021, 1131
BseRI	GAGGAG	4 cut(s)	558, 795, 893, 1124
BseXI	GCAGC	2 cut(s)	61, 730
Bsh1236I	CGCG	2 cut(s)	121, 173
BshFI	GGCC	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	621
BslFI	GGGAC	2 cut(s)	245, 475
BslI	CCNNNNNNNGG	3 cut(s)	269, 895, 1045
BsmAI	GTCTC	3 cut(s)	136, 578, 950
BsmBI	CGTCTC	1 cut(s)	578
BsmFI	GGGAC	2 cut(s)	245, 475
BsnI	GGCC	1 cut(s)	218
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
Bsp1720I	GCTNAGC	2 cut(s)	231, 615
BspACI	CCGC	2 cut(s)	119, 171
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	5 cut(s)	244, 607, 697, 1057, 1216
BspFNI	CGCG	2 cut(s)	121, 173
BspLI	GGNNCC	6 cut(s)	91, 169, 217, 260, 261, 292
BspPI	GGATC	1 cut(s)	725
BspQI	GCTCTTC	1 cut(s)	564
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	4 cut(s)	292, 744, 1021, 1131
BssECI	CCNNGG	1 cut(s)	1275
BssMI	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	5 cut(s)	552, 630, 1010, 1027, 1088
Bst6I	CTCTTC	2 cut(s)	535, 564
BstC8I	GCNNGC	2 cut(s)	621, 1137
BstDEI	CTNAG	6 cut(s)	231, 479, 615, 705, 1065, 1203
BstENI	CCTNNNNNAGG	1 cut(s)	1043
BstF5I	GGATG	4 cut(s)	313, 457, 772, 1285
BstFNI	CGCG	2 cut(s)	121, 173
BstKTI	GATC	6 cut(s)	60, 102, 127, 523, 733, 1032
BstMAI	GTCTC	3 cut(s)	136, 578, 950
BstMBI	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
BstMWI	GCNNNNNNNGC	2 cut(s)	620, 689
BstNI	CCWGG	1 cut(s)	890
BstSCI	CCNGG	1 cut(s)	888
BstUI	CGCG	2 cut(s)	121, 173
BstV1I	GCAGC	2 cut(s)	61, 730
BstV2I	GAAGAC	1 cut(s)	614
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	218
BtrI	CACGTC	1 cut(s)	1105
BtsCI	GGATG	4 cut(s)	313, 457, 772, 1285
BtsIMutI	CAGTG	4 cut(s)	959, 1015, 1062, 1093
Cac8I	GCNNGC	2 cut(s)	621, 1137
Cfr13I	GGNCC	2 cut(s)	216, 259
CseI	GACGC	3 cut(s)	162, 578, 845
Csp6I	GTAC	5 cut(s)	278, 500, 631, 871, 1147
CviAII	CATG	3 cut(s)	97, 112, 1258
CviQI	GTAC	5 cut(s)	278, 500, 631, 871, 1147
DdeI	CTNAG	6 cut(s)	231, 479, 615, 705, 1065, 1203
DpnI	GATC	6 cut(s)	59, 101, 126, 522, 732, 1031
DpnII	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
DrdI	GACNNNNNNGTC	1 cut(s)	1186
DseDI	GACNNNNNNGTC	1 cut(s)	1186
Eam1104I	CTCTTC	2 cut(s)	535, 564
EarI	CTCTTC	2 cut(s)	535, 564
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	985
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	1043
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	888
EcoRV	GATATC	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	621
Esp3I	CGTCTC	1 cut(s)	578
FaeI	CATG	3 cut(s)	100, 115, 1261
FaqI	GGGAC	2 cut(s)	245, 475
FatI	CATG	3 cut(s)	96, 111, 1257
FauNDI	CATATG	1 cut(s)	775
FbaI	TGATCA	3 cut(s)	57, 124, 1029
Fnu4HI	GCNGC	2 cut(s)	75, 744
FokI	GGATG	4 cut(s)	320, 464, 779, 1292
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	2 cut(s)	75, 744
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	2 cut(s)	75, 744
GsuI	CTGGAG	1 cut(s)	1148
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	3 cut(s)	162, 578, 845
Hin1II	CATG	3 cut(s)	100, 115, 1261
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	9 cut(s)	192, 419, 463, 676, 712, 941, 1227, 1271, 1301
HphI	GGTGA	2 cut(s)	167, 1031
Hpy188I	TCNGA	8 cut(s)	350, 424, 528, 721, 861, 1232, 1276, 1306
Hpy188III	TCNNGA	5 cut(s)	184, 669, 700, 980, 1292
HpyAV	CCTTC	2 cut(s)	316, 1190
HpyCH4III	ACNGT	5 cut(s)	552, 630, 1010, 1027, 1088
HpyCH4IV	ACGT	2 cut(s)	926, 1104
HpyCH4V	TGCA	1 cut(s)	1212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	620, 689
HpyF3I	CTNAG	6 cut(s)	231, 479, 615, 705, 1065, 1203
HpySE526I	ACGT	2 cut(s)	926, 1104
Hsp92II	CATG	3 cut(s)	100, 115, 1261
KflI	GGGWCCC	1 cut(s)	259
Ksp22I	TGATCA	3 cut(s)	57, 124, 1029
Kzo9I	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
LguI	GCTCTTC	1 cut(s)	564
Lsp1109I	GCAGC	2 cut(s)	61, 730
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	2 cut(s)	926, 1104
MalI	GATC	6 cut(s)	59, 101, 126, 522, 732, 1031
MboI	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	2 cut(s)	410, 595
MlyI	GAGTC	5 cut(s)	201, 428, 457, 721, 950
MmeI	TCCRAC	1 cut(s)	396
MseI	TTAA	3 cut(s)	48, 300, 795
MslI	CAYNNNNRTG	2 cut(s)	446, 597
MspA1I	CMGCKG	1 cut(s)	818
MspR9I	CCNGG	1 cut(s)	890
MvaI	CCWGG	1 cut(s)	890
MvnI	CGCG	2 cut(s)	121, 173
MwoI	GCNNNNNNNGC	2 cut(s)	620, 689
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
NlaIII	CATG	3 cut(s)	100, 115, 1261
NlaIV	GGNNCC	6 cut(s)	91, 169, 217, 260, 261, 292
NmuCI	GTSAC	5 cut(s)	377, 590, 1088, 1177, 1188
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PfeI	GAWTC	4 cut(s)	676, 1227, 1271, 1301
PkrI	GCNGC	2 cut(s)	76, 745
PleI	GAGTC	5 cut(s)	200, 427, 457, 720, 949
PpsI	GAGTC	5 cut(s)	200, 427, 457, 720, 949
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	6 cut(s)	91, 169, 217, 260, 261, 292
PspPI	GGNCC	2 cut(s)	216, 259
PspPPI	RGGWCCY	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	5 cut(s)	279, 501, 632, 872, 1148
RsaNI	GTAC	5 cut(s)	278, 500, 631, 871, 1147
RseI	CAYNNNNRTG	2 cut(s)	446, 597
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	48, 300, 795
SatI	GCNGC	2 cut(s)	75, 744
Sau3AI	GATC	6 cut(s)	57, 99, 124, 520, 730, 1029
Sau96I	GGNCC	2 cut(s)	216, 259
ScaI	AGTACT	2 cut(s)	632, 872
SchI	GAGTC	5 cut(s)	201, 428, 457, 721, 950
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	621
SinI	GGWCC	1 cut(s)	259
SmiMI	CAYNNNNRTG	2 cut(s)	446, 597
Sse9I	AATT	2 cut(s)	410, 595
SsiI	CCGC	2 cut(s)	119, 171
SspMI	CTAG	1 cut(s)	78
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	888
TaaI	ACNGT	5 cut(s)	552, 630, 1010, 1027, 1088
TaiI	ACGT	2 cut(s)	929, 1107
TaqI	TCGA	1 cut(s)	981
TasI	AATT	2 cut(s)	410, 595
TatI	WGTACW	4 cut(s)	277, 630, 870, 1146
TfiI	GAWTC	4 cut(s)	676, 1227, 1271, 1301
Tru1I	TTAA	3 cut(s)	48, 300, 795
Tru9I	TTAA	3 cut(s)	48, 300, 795
TscAI	CASTG	4 cut(s)	966, 1015, 1069, 1093
TseFI	GTSAC	5 cut(s)	377, 590, 1088, 1177, 1188
TseI	GCWGC	2 cut(s)	74, 743
Tsp45I	GTSAC	5 cut(s)	377, 590, 1088, 1177, 1188
TspDTI	ATGAA	3 cut(s)	423, 430, 1016
TspGWI	ACGGA	3 cut(s)	410, 552, 566
TspRI	CASTG	4 cut(s)	966, 1015, 1069, 1093
VpaK11BI	GGWCC	1 cut(s)	259
XagI	CCTNNNNNAGG	1 cut(s)	1043
XspI	CTAG	1 cut(s)	78
ZrmI	AGTACT	2 cut(s)	632, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.