Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001351.1

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

43538 .. 44851

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001351.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

atgtcggatggtcaggagactgataagaacattgagatatggaagattaagaagcagatcaaggaacttgaagctgcaaggggtaatggcaccagcatgatttctctcatcatgcctccccgagatcaaatatctcgtgttactaagatgcttggcgaagagtttggaactgcttcaaatattaagagtagggtgaatcgtcaatccgttctaggggccattacgtctgctcaggagcggctcaagcgttacaataaggttcctccaaatgggcttgctctatatacaggaacaattgttactgatgatggcaaggaaaagaagaagacagttgctattgagcctttcaggcctattaatgcgtctctttacctctgtgataacaagttccatattgaagctctgaatgaactcttggaatctgatgacaaatttggtttcattgtcatggatggtaatgggactctttttgggacactaagtggcaacacaagagaggtgcttcataaatttagtgttgacctgccaaagaaacacggaagaggaggacaatcagctcttcgttttgctcgtcttcgaatggagaagcgtcacaactatgttaggaagacagcagagcttgccacacagttttatatcaatcctgccaccagccagcctaatgtttcaggattaatacttgctggatcagctgacttcaaaactgagcttagtcagtcagatatgcttgatcctcgtctgcaggccaagattctgactgtggtggacatttcttatggaggagagaatggctttaatcaggctattgaattgtcagtagagatcctgtccaatgtgaagttcatacaggagaagaagttgattggaaaatactttgaggagattagtcaggatactggcaagtatgtttttggtgtagatgacacactcaaagctttggagatgggcgctgttgagatacttattgtgtgggaaagtctggacatcaataggtatgtgctaaaacatagcgttactggggagatcattgtgaagcatttgaacaaggagcaggagaacaatcagagcaactttcgtgatgctgagaccaatgcagaattagaggttcaggacaagatgtcactattggagtggtttgctaatgagtacaggcggtttgggtgttctcttgagtttgtgaccaacaaatcacaagaggggtcacagttctgccgaggctttggagggattggaggaattctccggtaccagcttgacatgaggtctttcgatgagttttctgacgatggtgaagtttatgatgattctgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

437

Amino Acids

49.24

Weight (kDa)

5.56

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	531
Acc65I	GGTACC	1 cut(s)	1245
AccB1I	GGYRCC	2 cut(s)	89, 1245
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	2 cut(s)	238, 1153
AclWI	GGATC	3 cut(s)	694, 725, 817
AcsI	RAATTY	3 cut(s)	431, 509, 1236
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	2 cut(s)	1148, 1247
AfiI	CCNNNNNNNGG	2 cut(s)	213, 269
AgsI	TTSAA	6 cut(s)	71, 177, 398, 700, 809, 1042
AhdI	GACNNNNNGTC	2 cut(s)	1117, 1261
AjuI	GAANNNNNNNTTGG	4 cut(s)	398, 430, 824, 856
AluBI	AGCT	8 cut(s)	74, 401, 557, 619, 692, 709, 935, 1252
AluI	AGCT	8 cut(s)	74, 401, 557, 619, 692, 709, 935, 1252
Alw26I	GTCTC	3 cut(s)	11, 369, 1079
AlwI	GGATC	3 cut(s)	694, 725, 817
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	3 cut(s)	216, 350, 744
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	3 cut(s)	431, 509, 1236
AseI	ATTAAT	2 cut(s)	357, 674
Asp700I	GAANNNNTTC	1 cut(s)	172
Asp718I	GGTACC	1 cut(s)	1245
AspLEI	GCGC	1 cut(s)	950
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	205, 1301
AsuII	TTCGAA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	120
BanI	GGYRCC	2 cut(s)	89, 1245
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	3 cut(s)	332, 566, 614
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	5 cut(s)	2, 302, 446, 937, 1280
BciVI	GTATCC	1 cut(s)	886
BcoDI	GTCTC	3 cut(s)	11, 369, 1079
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	740
BfoI	RGCGCY	1 cut(s)	951
BfuAI	ACCTGC	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	886
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	2 cut(s)	75, 239
BlsI	GCNGC	2 cut(s)	76, 240
BmeRI	GACNNNNNGTC	2 cut(s)	1117, 1261
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	4 cut(s)	91, 217, 261, 1247
BmrI	ACTGGG	1 cut(s)	1026
BmsI	GCATC	2 cut(s)	138, 1069
BmuI	ACTGGG	1 cut(s)	1026
BpiI	GAAGAC	3 cut(s)	332, 566, 614
BplI	GAGNNNNNCTC	2 cut(s)	1224, 1256
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	227, 1190
BsaI	GGTCTC	1 cut(s)	1079
BsaJI	CCNNGG	1 cut(s)	1213
BsaWI	WCCGGW	1 cut(s)	1242
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 269
Bse1I	ACTGG	2 cut(s)	901, 1021
BseDI	CCNNGG	1 cut(s)	1213
BseGI	GGATG	2 cut(s)	13, 457
BseLI	CCNNNNNNNGG	2 cut(s)	213, 269
BseMII	CTCAG	3 cut(s)	245, 696, 1074
BseNI	ACTGG	2 cut(s)	901, 1021
BseRI	GAGGAG	3 cut(s)	558, 795, 893
BseXI	GCAGC	1 cut(s)	61
BshFI	GGCC	3 cut(s)	218, 352, 746
BshNI	GGYRCC	2 cut(s)	89, 1245
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	1243
BslFI	GGGAC	2 cut(s)	475, 487
BslI	CCNNNNNNNGG	2 cut(s)	213, 269
BsmAI	GTCTC	3 cut(s)	11, 369, 1079
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	475, 487
BsnI	GGCC	3 cut(s)	218, 352, 746
Bso31I	GGTCTC	1 cut(s)	1079
BsoBI	CYCGRG	1 cut(s)	120
Bsp119I	TTCGAA	1 cut(s)	577
Bsp143I	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
BspACI	CCGC	2 cut(s)	238, 1153
BspANI	GGCC	3 cut(s)	218, 352, 746
BspCNI	CTCAG	3 cut(s)	244, 697, 1075
BspLI	GGNNCC	4 cut(s)	91, 217, 261, 1247
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	694, 725, 817
BspQI	GCTCTTC	1 cut(s)	564
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	2 cut(s)	89, 1245
BspTNI	GGTCTC	1 cut(s)	1079
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	901, 1021
BssECI	CCNNGG	1 cut(s)	1213
BssMI	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	331, 630, 760, 1206
Bst6I	CTCTTC	3 cut(s)	153, 535, 564
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	276, 621, 656, 744
BstDEI	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1083
BstF5I	GGATG	2 cut(s)	13, 457
BstH2I	RGCGCY	1 cut(s)	951
BstHHI	GCGC	1 cut(s)	950
BstKTI	GATC	6 cut(s)	60, 127, 689, 733, 825, 1026
BstMAI	GTCTC	3 cut(s)	11, 369, 1079
BstMBI	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
BstSFI	CTRYAG	1 cut(s)	740
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	3 cut(s)	332, 566, 614
BstX2I	RGATCY	1 cut(s)	822
BstYI	RGATCY	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	3 cut(s)	218, 352, 746
BtsCI	GGATG	2 cut(s)	13, 457
BveI	ACCTGC	1 cut(s)	531
Cac8I	GCNNGC	4 cut(s)	276, 621, 656, 744
CfoI	GCGC	1 cut(s)	950
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	2 cut(s)	351, 578
Csp6I	GTAC	2 cut(s)	1147, 1246
CviAII	CATG	4 cut(s)	97, 112, 448, 1258
CviQI	GTAC	2 cut(s)	1147, 1246
DdeI	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1083
DpnI	GATC	6 cut(s)	59, 126, 688, 732, 824, 1025
DpnII	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
DraIII	CACNNNGTG	1 cut(s)	482
DriI	GACNNNNNGTC	2 cut(s)	1117, 1261
Eam1104I	CTCTTC	3 cut(s)	153, 535, 564
Eam1105I	GACNNNNNGTC	2 cut(s)	1117, 1261
EarI	CTCTTC	3 cut(s)	153, 535, 564
Eco147I	AGGCCT	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	1079
Eco88I	CYCGRG	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	1236
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	100, 115, 451, 1261
FaqI	GGGAC	2 cut(s)	475, 487
FatI	CATG	4 cut(s)	96, 111, 447, 1257
Fnu4HI	GCNGC	2 cut(s)	75, 239
FokI	GGATG	2 cut(s)	20, 464
Fsp4HI	GCNGC	2 cut(s)	75, 239
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	949
GluI	GCNGC	2 cut(s)	75, 239
HaeII	RGCGCY	1 cut(s)	951
HaeIII	GGCC	3 cut(s)	218, 352, 746
HapII	CCGG	1 cut(s)	1243
HgaI	GACGC	2 cut(s)	351, 578
HhaI	GCGC	1 cut(s)	950
Hin1II	CATG	4 cut(s)	100, 115, 451, 1261
Hin6I	GCGC	1 cut(s)	948
HinP1I	GCGC	1 cut(s)	948
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	5 cut(s)	196, 419, 463, 751, 1304
HpaII	CCGG	1 cut(s)	1243
HphI	GGTGA	2 cut(s)	205, 1301
Hpy166II	GTNNAC	2 cut(s)	520, 766
Hpy188I	TCNGA	8 cut(s)	7, 405, 424, 721, 756, 1065, 1282, 1309
Hpy188III	TCNNGA	8 cut(s)	14, 233, 669, 890, 980, 1076, 1109, 1169
Hpy8I	GTNNAC	2 cut(s)	520, 766
HpyCH4III	ACNGT	4 cut(s)	331, 630, 760, 1206
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	77, 742, 1094
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
HpyF3I	CTNAG	6 cut(s)	144, 231, 479, 705, 710, 1083
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	4 cut(s)	100, 115, 451, 1261
HspAI	GCGC	1 cut(s)	948
KpnI	GGTACC	1 cut(s)	1249
Kzo9I	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
LguI	GCTCTTC	1 cut(s)	564
LmnI	GCTCC	2 cut(s)	235, 1048
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	138, 1069
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	8 cut(s)	139, 248, 298, 590, 1012, 1119, 1177, 1200
MalI	GATC	6 cut(s)	59, 126, 688, 732, 824, 1025
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
MboII	GAAGA	9 cut(s)	55, 170, 334, 337, 551, 552, 566, 619, 865
MfeI	CAATTG	1 cut(s)	294
MflI	RGATCY	1 cut(s)	822
MluCI	AATT	6 cut(s)	294, 431, 509, 809, 1097, 1236
MlyI	GAGTC	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	5 cut(s)	48, 183, 357, 674, 795
MslI	CAYNNNNRTG	3 cut(s)	95, 446, 597
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	1243
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	244, 349, 620, 689
NdeII	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
NlaIII	CATG	4 cut(s)	100, 115, 451, 1261
NlaIV	GGNNCC	4 cut(s)	91, 217, 261, 1247
NmeAIII	GCCGAG	1 cut(s)	1238
NmuCI	GTSAC	4 cut(s)	590, 1119, 1177, 1200
NspV	TTCGAA	1 cut(s)	577
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	4 cut(s)	196, 419, 751, 1304
PkrI	GCNGC	2 cut(s)	76, 240
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PshBI	ATTAAT	2 cut(s)	357, 674
PspN4I	GGNNCC	4 cut(s)	91, 217, 261, 1247
PspPI	GGNCC	1 cut(s)	216
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	2 cut(s)	1148, 1247
RsaNI	GTAC	2 cut(s)	1147, 1246
RseI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	5 cut(s)	48, 183, 357, 674, 795
SatI	GCNGC	2 cut(s)	75, 239
Sau3AI	GATC	6 cut(s)	57, 124, 686, 730, 822, 1023
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	138, 1069
SfcI	CTRYAG	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	577
SmiMI	CAYNNNNRTG	3 cut(s)	95, 446, 597
SmlI	CTYRAG	2 cut(s)	242, 1169
SmoI	CTYRAG	2 cut(s)	242, 1169
Sse9I	AATT	6 cut(s)	294, 431, 509, 809, 1097, 1236
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	238, 1153
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	212
StuI	AGGCCT	1 cut(s)	352
TaaI	ACNGT	4 cut(s)	331, 630, 760, 1206
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	2 cut(s)	577, 1269
TasI	AATT	6 cut(s)	294, 431, 509, 809, 1097, 1236
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	196, 419, 751, 1304
Tru1I	TTAA	5 cut(s)	48, 183, 357, 674, 795
Tru9I	TTAA	5 cut(s)	48, 183, 357, 674, 795
TseFI	GTSAC	4 cut(s)	590, 1119, 1177, 1200
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	4 cut(s)	590, 1119, 1177, 1200
TspDTI	ATGAA	4 cut(s)	423, 430, 494, 832
TspGWI	ACGGA	2 cut(s)	196, 552
VspI	ATTAAT	2 cut(s)	357, 674
XapI	RAATTY	3 cut(s)	431, 509, 1236
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.