Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Reverse (-)

20846930 .. 20848081

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCAGATTATCACGAGACCGATAAACACATTGAGATGTGGAAAACTAAGAAACTAATAAAGGGACTTGAAGATGCGAGGGGTAATGGCACCAGCATGATTTCTATCATCATTCCTCCCCGTGATCAAATCACTCGTGTTACTAAGATGTTGGATAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTTTGTTTTATGTGCAATTAAATCTTCTCTGCAGCGGCTCAAGGGTTACAACAAGCTTCCCCCTAATGGACTTGTGCTCTATATTGGAACAATTGTTACTGAAGACAGGAAGGAGAAAAAGATTGCAATTAATTTTGAGCCTTTCAAGCCCATCAATGTGTCTCTTTACCTCTGTGACAAGAAGTTCCATGTTGAAGCTCTTAATGAACTCTTACAATCTGATGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTAGTCTTTTTGGGACATTAAGTGGTAACACGAGGAAGGTGCTTCATAACTATACTGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGTTTTGCTCGTCTTGGAGAGGAGGCACGCCATAACTATGTTTCTAAGGCAGCAGAAAATGCCACTAAGCTTTTTATTAACCCTGCCACCAACAAGCCCAATGTTGCAGGAATAATACTGGCAGGATCAGCGGACTTCAAAATTGTGCTTAGTGGGTCAGACAAGTTTGATCCGCTTCTGCAGGCCAAAATACTGAATGTGGTGAGTGTTCGTTGCAGAGGAGAGAATGGTTTCGATCAGGCTATTGACTTGTCATCGAAGATTCTATCCAATGTGAAATTTGTGCAGGAGAAACGCTTGATGAAAAAATACTTTGAAGAGATTAGATTCGATACAGGAATGTATGTTTTTGGTTTAGATGATACTCTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATTGTGTCGGAAAGTCTGGAAATTAGTAGGTATGTGCTGAAAAACTCTAGTACTGGTGAGATTGTTGTCAAACATCTTAACAAAGAGCAGGAAAACAATAAGAGCAACTTTTGGGATTCTGCCAACTCTAGAGAACTAGATATTCAAGACAAGATGTCATTGTTGGAGTGGTTCACTGACGAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

384

Amino Acids

43.33

Weight (kDa)

9.16

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	17 - 139	6.4e-50	eRF1 domain 1
eRF1_2	PF03464	144 - 277	2.8e-33	eRF1 domain 2
eRF1_3	PF03465	281 - 353	4.3e-14	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	3 cut(s)	238, 692, 734
AclWI	GGATC	2 cut(s)	694, 725
AcsI	RAATTY	2 cut(s)	431, 839
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	1015, 1148
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	7 cut(s)	71, 177, 349, 398, 700, 878, 1109
AhdI	GACNNNNNGTC	1 cut(s)	1117
AluBI	AGCT	5 cut(s)	259, 401, 557, 631, 935
AluI	AGCT	5 cut(s)	259, 401, 557, 631, 935
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	2 cut(s)	11, 369
AlwI	GGATC	2 cut(s)	694, 725
AoxI	GGCC	1 cut(s)	744
ApeKI	GCWGC	2 cut(s)	235, 611
ApoI	RAATTY	2 cut(s)	431, 839
AseI	ATTAAT	1 cut(s)	333
Asp700I	GAANNNNTTC	2 cut(s)	172, 791
AsuHPI	GGTGA	3 cut(s)	205, 775, 1031
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	3 cut(s)	14, 135, 490
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	247, 623
BccI	CCATC	2 cut(s)	362, 446
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	11, 369
BfaI	CTAG	4 cut(s)	1011, 1092, 1100, 1150
BfmI	CTRYAG	2 cut(s)	233, 740
BisI	GCNGC	3 cut(s)	236, 239, 612
BlsI	GCNGC	3 cut(s)	237, 240, 613
BmcAI	AGTACT	2 cut(s)	1015, 1148
BmeRI	GACNNNNNGTC	1 cut(s)	1117
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	684, 1021
Bse8I	GATNNNNATC	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	684, 1021
BseRI	GAGGAG	3 cut(s)	558, 596, 795
BseXI	GCAGC	2 cut(s)	247, 623
BsgI	GTGCAG	1 cut(s)	866
BshFI	GGCC	1 cut(s)	746
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	78, 487
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	2 cut(s)	11, 369
BsmFI	GGGAC	2 cut(s)	78, 487
BsnI	GGCC	1 cut(s)	746
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	124, 686, 730, 796
BspACI	CCGC	3 cut(s)	238, 692, 734
BspANI	GGCC	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	91
BspMAI	CTGCAG	2 cut(s)	237, 744
BspPI	GGATC	2 cut(s)	694, 725
BspQI	GCTCTTC	1 cut(s)	564
BspT107I	GGYRCC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	684, 1021
BssMI	GATC	4 cut(s)	124, 686, 730, 796
BssSI	CACGAG	3 cut(s)	14, 135, 490
Bst2BI	CACGAG	3 cut(s)	14, 135, 490
Bst4CI	ACNGT	2 cut(s)	200, 517
Bst6I	CTCTTC	3 cut(s)	535, 564, 873
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	589, 744
BstDEI	CTNAG	5 cut(s)	48, 144, 606, 627, 710
BstKTI	GATC	4 cut(s)	127, 689, 733, 799
BstMAI	GTCTC	2 cut(s)	11, 369
BstMBI	GATC	4 cut(s)	124, 686, 730, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
BstSFI	CTRYAG	2 cut(s)	233, 740
BstV1I	GCAGC	2 cut(s)	247, 623
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	746
BtsIMutI	CAGTG	1 cut(s)	1137
Cac8I	GCNNGC	2 cut(s)	589, 744
Csp6I	GTAC	2 cut(s)	1014, 1147
CviAII	CATG	4 cut(s)	97, 392, 458, 536
CviQI	GTAC	2 cut(s)	1014, 1147
DdeI	CTNAG	5 cut(s)	48, 144, 606, 627, 710
DpnI	GATC	4 cut(s)	126, 688, 732, 798
DpnII	GATC	4 cut(s)	124, 686, 730, 796
DriI	GACNNNNNGTC	1 cut(s)	1117
Eam1104I	CTCTTC	3 cut(s)	535, 564, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	1117
EarI	CTCTTC	3 cut(s)	535, 564, 873
Eco31I	GGTCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	324
FaeI	CATG	4 cut(s)	100, 395, 461, 539
FalI	AAGNNNNNCTT	2 cut(s)	1055, 1087
FaqI	GGGAC	2 cut(s)	78, 487
FatI	CATG	4 cut(s)	96, 391, 457, 535
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	236, 239, 612
Fsp4HI	GCNGC	3 cut(s)	236, 239, 612
FspBI	CTAG	4 cut(s)	1011, 1092, 1100, 1150
GluI	GCNGC	3 cut(s)	236, 239, 612
HaeIII	GGCC	1 cut(s)	746
Hin1II	CATG	4 cut(s)	100, 395, 461, 539
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	3 cut(s)	257, 629, 933
HinfI	GANTC	3 cut(s)	823, 888, 1079
HphI	GGTGA	3 cut(s)	205, 775, 1031
Hpy166II	GTNNAC	3 cut(s)	196, 520, 1137
Hpy188I	TCNGA	3 cut(s)	424, 721, 973
Hpy188III	TCNNGA	4 cut(s)	14, 980, 1092, 1109
Hpy8I	GTNNAC	3 cut(s)	196, 520, 1137
HpyAV	CCTTC	2 cut(s)	307, 490
HpyCH4III	ACNGT	2 cut(s)	200, 517
HpyCH4V	TGCA	7 cut(s)	218, 235, 329, 668, 742, 777, 847
HpyF10VI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
HpyF3I	CTNAG	5 cut(s)	48, 144, 606, 627, 710
Hsp92II	CATG	4 cut(s)	100, 395, 461, 539
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	124, 686, 730, 796
LguI	GCTCTTC	1 cut(s)	564
Lsp1109I	GCAGC	2 cut(s)	247, 623
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	4 cut(s)	1011, 1092, 1100, 1150
MaeIII	GTNAC	5 cut(s)	139, 248, 298, 377, 485
MalI	GATC	4 cut(s)	126, 688, 732, 798
MboI	GATC	4 cut(s)	124, 686, 730, 796
MboII	GAAGA	8 cut(s)	83, 219, 317, 551, 552, 832, 890, 967
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	8 cut(s)	219, 294, 330, 334, 431, 702, 839, 984
MmeI	TCCRAC	3 cut(s)	132, 951, 1107
MroXI	GAANNNNTTC	2 cut(s)	172, 791
MseI	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1041
MslI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
MspA1I	CMGCKG	2 cut(s)	238, 692
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	349, 620, 689
NdeII	GATC	4 cut(s)	124, 686, 730, 796
NlaIII	CATG	4 cut(s)	100, 395, 461, 539
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	172, 791
PfeI	GAWTC	3 cut(s)	823, 888, 1079
PkrI	GCNGC	3 cut(s)	237, 240, 613
PshBI	ATTAAT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	91
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	2 cut(s)	237, 744
RsaI	GTAC	2 cut(s)	1015, 1148
RsaNI	GTAC	2 cut(s)	1014, 1147
RseI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SapI	GCTCTTC	1 cut(s)	564
SaqAI	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1041
SatI	GCNGC	3 cut(s)	236, 239, 612
Sau3AI	GATC	4 cut(s)	124, 686, 730, 796
ScaI	AGTACT	2 cut(s)	1015, 1148
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	2 cut(s)	233, 740
SmiMI	CAYNNNNRTG	4 cut(s)	35, 95, 359, 597
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	8 cut(s)	219, 294, 330, 334, 431, 702, 839, 984
SsiI	CCGC	3 cut(s)	238, 692, 734
SspMI	CTAG	4 cut(s)	1011, 1092, 1100, 1150
TaaI	ACNGT	2 cut(s)	200, 517
TaqI	TCGA	3 cut(s)	795, 818, 891
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	8 cut(s)	219, 294, 330, 334, 431, 702, 839, 984
TatI	WGTACW	2 cut(s)	1013, 1146
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	3 cut(s)	823, 888, 1079
Tru1I	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1041
Tru9I	TTAA	6 cut(s)	222, 333, 405, 479, 639, 1041
TscAI	CASTG	1 cut(s)	1144
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	235, 611
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	423, 430, 494, 878
TspRI	CASTG	1 cut(s)	1144
VspI	ATTAAT	1 cut(s)	333
XapI	RAATTY	2 cut(s)	431, 839
XbaI	TCTAGA	1 cut(s)	1091
XmnI	GAANNNNTTC	2 cut(s)	172, 791
XspI	CTAG	4 cut(s)	1011, 1092, 1100, 1150
ZrmI	AGTACT	2 cut(s)	1015, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.