Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001507

Physical Location & Seq

Genomic Coordinates Forward (+)

27261334 .. 27264254

Gene Structure 2921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G315900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGCAGATGCTCATGAATCAGATAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAGGCATTGGAATCTGCAAGAGGCAATGGCACCAGTATGATATCTCTTATAATGCCTCCACGTGATCAAATTTCTCGGGTCACTAAGATGCTGGGTGATGAATTTGGAACTGCTTCAAACATCAAAAGCAGGGTCAACCGTCAGTCCGTGTTGGGTGCTATTACTTCTGCTCAACAGAGGCTGAAGCTGTATAATAAGGTTCCTCCCAATGGGCTGGTTCTTTATACAGGAACAATTGTTACTGAAGATGGCAAGGAAAAGAAGGTGACAATTGACTTTGAACCGTTCAGGCCTATAAATGCCTCTCTGTATCTATGTGATAACAAGTTTCACACAGAAGCTCTAAATGAACTTTTAGAATCTGATGATAAGTTTGGTTTTATTGTCATGGATGGAAATGGTACTCTCTTTGGGACATTAACTGGAAACACACGAGAGGTGCTACACAAGTTCACTGTTGACTTACCAAAGAAGCATGGAAGAGGAGGGCAGTCAGCTTTGCGTTTTGCCCGTCTTCGGATGGAAAAGCGGCATAACTATGTGAGAAAGACTGCAGAACTTGCCACACAGTTCTTCATCAACCCTGCCACCAGTCAGCCTAATGTTTCTGGACTCATACTTGCTGGTTCAGCCGACTTCAAGACTGAGCTGAGCCAGTCGGATATGTTTGATCCTCGCTTACAAGCAAAGATATTGAATGTCGTTGATGTCTCCTATGGGGGAGAAAATGGGTTCAATCAAGCTATCGAGCTGTCTGCAGAGATTCTATCTAATGTAAAGTTCATACAGGAGAAGCGCTTGATTGGCAAGTATTTTGAAGAAATCAGCCAGGATACGGGAAAGTATGTCTTTGGTGTAGATGACACATTGAAGGCTTTGGAAATGGGTGCTGTTGAAATCCTAATTGTGTGGGAAAATCTGGATATCACTAGGTATGTGCTGAAAAACATTGCAACTGGTGAGATTATCATAAAGCATTTGAACAAAGAGCAAGAAGCCAACCAGAGCAATTTTCGGGATCCAGATACCTCTGCGGAGTTGGAAGTTCAGGATAAGATGCCGTTGCTTGAGTGGTTTGCGAATGAGTACAAGCGCTTTGGTTGCACACTTGAATTTGTAACCAACAAATCCCAAGAAGGGTCCCAGTTTTGCAGAGGATTCGGTGGGATTGGAGGCATCCTTCGCTACCAGCTTGACATAAGATCATTTGATGAGCTATCTGATGATGGCGAAGTATATGAGGATTCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

eRF1_1 eRF1_2 eRF1_3

Protein Analysis

438

Amino Acids

49.14

Weight (kDa)

5.45

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12920 AT3G26618 AT5G47880 AT5G47880
fragaria_vesca	FvH4_2g19650 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010 FvH4_4g22010
malus_domestica	MD07G1033800.v1.1 MD10G1170100.v1.1 MD13G1135000.v1.1 MD16G1130800.v1.1
prunus_persica	Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.1G210300_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1 Prupe.3G315900_v2.0.a1
pyrus_communis	pycom07g02390 pycom13g11780 pycom16g11530
rosa_chinensis	RchiOBHm_Chr4g0428211 RchiOBHm_Chr6g0253761 RchiOBHm_Chr6g0285401
rosa_laevigata	RLG00000007169 RLG00000012645 RLG00000014986
rosa_multiflora	Rmu_co8434751.1_g000001 Rmu_sc0001351.1_g000012 Rmu_sc0001351.1_g000013 Rmu_sc0006662.1_g000018 Rmu_sc0012535.1_g000001
rosa_roxburghii	Rroxscaffold_5G00369930 Rroxscaffold_7G00183260
rosa_rugosa	Rorug04G0223700 Rorug04G0223800 Rorug05G0546100 Rorug06G0174100
rosa_samantha	Rh4AG280900 Rh4BG286400 Rh4CG302100 Rh4DG283400 Rh6BG286500 Rh6CG287600
rosa_wichuraiana	Rw4G024400 Rw6G005490 Rw6G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	589, 1094
AclWI	GGATC	3 cut(s)	725, 1073, 1086
AcsI	RAATTY	3 cut(s)	129, 161, 1172
AcuI	CTGAAG	2 cut(s)	263, 324
AcvI	CACGTG	1 cut(s)	122
AfaI	GTAC	2 cut(s)	463, 1148
AfeI	AGCGCT	2 cut(s)	857, 1154
AfiI	CCNNNNNNNGG	4 cut(s)	269, 576, 895, 1197
AjnI	CCWGG	1 cut(s)	888
AluBI	AGCT	8 cut(s)	247, 401, 557, 709, 803, 811, 1252, 1276
AluI	AGCT	8 cut(s)	247, 401, 557, 709, 803, 811, 1252, 1276
Alw26I	GTCTC	1 cut(s)	775
AlwI	GGATC	3 cut(s)	725, 1073, 1086
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	135
Aor51HI	AGCGCT	2 cut(s)	857, 1154
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	129, 161, 1172
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
Asp700I	GAANNNNTTC	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	858, 1155
AspS9I	GGNCC	1 cut(s)	1200
AsuHPI	GGTGA	3 cut(s)	167, 337, 1031
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	1200
BamHI	GGATCC	1 cut(s)	1078
BanI	GGYRCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	492
BbrPI	CACGTG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	566
BccI	CCATC	4 cut(s)	302, 446, 574, 1280
BceAI	ACGGC	1 cut(s)	1105
BcgI	CGANNNNNNTGC	4 cut(s)	797, 831, 1201, 1235
BciT130I	CCWGG	1 cut(s)	890
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	2 cut(s)	57, 124
BcoDI	GTCTC	1 cut(s)	775
BfaI	CTAG	1 cut(s)	990
BfmI	CTRYAG	2 cut(s)	612, 816
BfoI	RGCGCY	2 cut(s)	859, 1156
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	1 cut(s)	590
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	1200
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	1200
BmiI	GGNNCC	5 cut(s)	91, 261, 1080, 1201, 1202
BmrFI	CCNGG	1 cut(s)	890
BmrI	ACTGGG	1 cut(s)	1198
BmsI	GCATC	3 cut(s)	138, 1107, 1245
BmuI	ACTGGG	1 cut(s)	1198
BpiI	GAAGAC	1 cut(s)	566
Bpu1102I	GCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	1 cut(s)	1148
BsaAI	YACGTR	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 576, 895, 1197
Bse1I	ACTGG	6 cut(s)	93, 487, 651, 715, 1021, 1204
Bse3DI	GCAATG	2 cut(s)	91, 1008
BseBI	CCWGG	1 cut(s)	890
BseGI	GGATG	3 cut(s)	457, 585, 1236
BseLI	CCNNNNNNNGG	4 cut(s)	269, 576, 895, 1197
BseMI	GCAATG	2 cut(s)	91, 1008
BseMII	CTCAG	2 cut(s)	696, 701
BseNI	ACTGG	6 cut(s)	93, 487, 651, 715, 1021, 1204
BseRI	GAGGAG	1 cut(s)	558
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	487, 1186
BslI	CCNNNNNNNGG	4 cut(s)	269, 576, 895, 1197
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	2 cut(s)	487, 1186
BsnI	GGCC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
Bsp1720I	GCTNAGC	1 cut(s)	710
BspACI	CCGC	2 cut(s)	589, 1094
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	697, 702
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	5 cut(s)	91, 261, 1080, 1201, 1202
BspMAI	CTGCAG	2 cut(s)	616, 820
BspPI	GGATC	3 cut(s)	725, 1073, 1086
BspT107I	GGYRCC	1 cut(s)	89
BsrDI	GCAATG	2 cut(s)	91, 1008
BsrI	ACTGG	6 cut(s)	93, 487, 651, 715, 1021, 1204
BssMI	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	4 cut(s)	200, 345, 517, 630
Bst6I	CTCTTC	1 cut(s)	535
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	144, 705, 710
BstF5I	GGATG	3 cut(s)	457, 585, 1236
BstH2I	RGCGCY	2 cut(s)	859, 1156
BstHHI	GCGC	2 cut(s)	858, 1155
BstKTI	GATC	6 cut(s)	48, 60, 127, 733, 1081, 1265
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
BstMWI	GCNNNNNNNGC	5 cut(s)	620, 689, 864, 1161, 1242
BstNI	CCWGG	1 cut(s)	890
BstSCI	CCNGG	1 cut(s)	888
BstSFI	CTRYAG	2 cut(s)	612, 816
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	1078
BstXI	CCANNNNNNTGG	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	1078
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	457, 585, 1236
BtsIMutI	CAGTG	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	241
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	2 cut(s)	858, 1155
Cfr13I	GGNCC	1 cut(s)	1200
Csp6I	GTAC	2 cut(s)	462, 1147
CviAII	CATG	3 cut(s)	14, 448, 536
CviQI	GTAC	2 cut(s)	462, 1147
DdeI	CTNAG	3 cut(s)	144, 705, 710
DpnI	GATC	6 cut(s)	47, 59, 126, 732, 1080, 1264
DpnII	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
Eam1104I	CTCTTC	1 cut(s)	535
EarI	CTCTTC	1 cut(s)	535
Eco147I	AGGCCT	1 cut(s)	352
Eco32I	GATATC	2 cut(s)	102, 985
Eco47I	GGWCC	1 cut(s)	1200
Eco47III	AGCGCT	2 cut(s)	857, 1154
Eco57I	CTGAAG	2 cut(s)	263, 324
Eco72I	CACGTG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	1200
EcoRII	CCWGG	1 cut(s)	888
EcoRV	GATATC	2 cut(s)	102, 985
FaeI	CATG	3 cut(s)	17, 451, 539
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	2 cut(s)	487, 1186
FatI	CATG	3 cut(s)	13, 447, 535
FbaI	TGATCA	2 cut(s)	57, 124
Fnu4HI	GCNGC	1 cut(s)	590
FokI	GGATG	3 cut(s)	464, 592, 1223
Fsp4HI	GCNGC	1 cut(s)	590
FspBI	CTAG	1 cut(s)	990
GlaI	GCGC	2 cut(s)	857, 1154
GluI	GCNGC	1 cut(s)	590
GsaI	CCCAGC	1 cut(s)	155
HaeII	RGCGCY	2 cut(s)	859, 1156
HaeIII	GGCC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	858, 1155
Hin1II	CATG	3 cut(s)	17, 451, 539
Hin6I	GCGC	2 cut(s)	856, 1153
HinP1I	GCGC	2 cut(s)	856, 1153
HincII	GTYRAC	2 cut(s)	196, 520
HindII	GTYRAC	2 cut(s)	196, 520
HinfI	GANTC	7 cut(s)	17, 71, 419, 672, 823, 1218, 1304
HphI	GGTGA	3 cut(s)	167, 337, 1031
Hpy166II	GTNNAC	3 cut(s)	196, 513, 520
Hpy188I	TCNGA	6 cut(s)	22, 424, 579, 721, 1282, 1309
Hpy188III	TCNNGA	8 cut(s)	14, 49, 669, 700, 980, 1076, 1082, 1109
Hpy8I	GTNNAC	3 cut(s)	196, 513, 520
HpyAV	CCTTC	4 cut(s)	316, 925, 1190, 1250
HpyCH4III	ACNGT	4 cut(s)	200, 345, 517, 630
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	77, 614, 818, 1013, 1164, 1212
HpyF10VI	GCNNNNNNNGC	5 cut(s)	620, 689, 864, 1161, 1242
HpyF3I	CTNAG	3 cut(s)	144, 705, 710
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	3 cut(s)	17, 451, 539
HspAI	GCGC	2 cut(s)	856, 1153
KflI	GGGWCCC	1 cut(s)	1200
Ksp22I	TGATCA	2 cut(s)	57, 124
Kzo9I	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
LweI	GCATC	3 cut(s)	138, 1107, 1245
MaeI	CTAG	1 cut(s)	990
MaeII	ACGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	139, 298, 325, 1177
MalI	GATC	6 cut(s)	47, 59, 126, 732, 1080, 1264
MboI	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
MboII	GAAGA	6 cut(s)	55, 317, 552, 566, 625, 890
MfeI	CAATTG	2 cut(s)	294, 330
MflI	RGATCY	1 cut(s)	1078
MluCI	AATT	8 cut(s)	53, 129, 161, 294, 330, 963, 1069, 1172
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	2 cut(s)	699, 1080
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	2 cut(s)	479, 1312
MslI	CAYNNNNRTG	3 cut(s)	95, 146, 597
MspR9I	CCNGG	1 cut(s)	890
MunI	CAATTG	2 cut(s)	294, 330
MvaI	CCWGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	5 cut(s)	620, 689, 864, 1161, 1242
NdeII	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
NlaIII	CATG	3 cut(s)	17, 451, 539
NlaIV	GGNNCC	5 cut(s)	91, 261, 1080, 1201, 1202
NmuCI	GTSAC	2 cut(s)	139, 325
PagI	TCATGA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	6 cut(s)	17, 71, 419, 823, 1218, 1304
PkrI	GCNGC	1 cut(s)	591
PleI	GAGTC	1 cut(s)	666
PmaCI	CACGTG	1 cut(s)	122
PmlI	CACGTG	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	666
Ppu21I	YACGTR	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	1200
PsiI	TTATAA	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	1200
Psp6I	CCWGG	1 cut(s)	888
PspCI	CACGTG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	5 cut(s)	91, 261, 1080, 1201, 1202
PspPI	GGNCC	1 cut(s)	1200
PspPPI	RGGWCCY	1 cut(s)	1200
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
PstI	CTGCAG	2 cut(s)	616, 820
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	1078
RsaI	GTAC	2 cut(s)	463, 1148
RsaNI	GTAC	2 cut(s)	462, 1147
RseI	CAYNNNNRTG	3 cut(s)	95, 146, 597
SaqAI	TTAA	2 cut(s)	479, 1312
SatI	GCNGC	1 cut(s)	590
Sau3AI	GATC	6 cut(s)	45, 57, 124, 730, 1078, 1262
Sau96I	GGNCC	1 cut(s)	1200
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	1 cut(s)	890
SfaNI	GCATC	3 cut(s)	138, 1107, 1245
SfcI	CTRYAG	2 cut(s)	612, 816
SinI	GGWCC	1 cut(s)	1200
SmiMI	CAYNNNNRTG	3 cut(s)	95, 146, 597
SmlI	CTYRAG	1 cut(s)	1127
SmoI	CTYRAG	1 cut(s)	1127
Sse9I	AATT	8 cut(s)	53, 129, 161, 294, 330, 963, 1069, 1172
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	589, 1094
SspMI	CTAG	1 cut(s)	990
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	888
TaaI	ACNGT	4 cut(s)	200, 345, 517, 630
TaiI	ACGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	807
TasI	AATT	8 cut(s)	53, 129, 161, 294, 330, 963, 1069, 1172
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	1 cut(s)	592
TfiI	GAWTC	6 cut(s)	17, 71, 419, 823, 1218, 1304
Tru1I	TTAA	2 cut(s)	479, 1312
Tru9I	TTAA	2 cut(s)	479, 1312
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	2 cut(s)	139, 325
Tsp45I	GTSAC	2 cut(s)	139, 325
TspDTI	ATGAA	5 cut(s)	30, 174, 423, 625, 832
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	1200
XapI	RAATTY	3 cut(s)	129, 161, 1172
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.