Rh6CG055300

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015531
Physical Location & Seq
Forward (+)
5634629 .. 5634983
355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG055300.1

Sequence Viewer

Length: 276 bp
ATGCTCATCTGTTCTGGCTCGGTTCACTCGTGGGACTTCGCCGGCTCTCCCTCGCCTTCACCAGCCATTGGGATGCCAACACCACACGAGCCATCTAAAGGGATTTTCAAAATGAAAAGGAGAGGGTCTTTCCCTGCGACTTGTTACTCAAAATGTAATCAGTGCGAGCCTTGCATCCCAGTTCAAGTATCCGTCCGGGCAATGGAATTGGAAGAAAACGAGTACTATCCACAAGTCTGGAAATGTGCTTGTGGGGATAATCTATTTTCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

91

Amino Acids

10.04

Weight (kDa)

6.69

Isoelectric Point (pI)

70.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 41 - 91 7.7e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 68
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 68, 98, 202
AgsI TTSAA 2 cut(s) 109, 185
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 51
BauI CACGAG 2 cut(s) 28, 86
BccI CCATC 1 cut(s) 100
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 63, 183
BmuI ACTGGG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 98, 202
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 207
BseGI GGATG 2 cut(s) 78, 174
BseLI CCNNNNNNNGG 3 cut(s) 68, 98, 202
BseMI GCAATG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 179
BsiSI CCGG 2 cut(s) 42, 196
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 68, 98, 202
BsmFI GGGAC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 41
BssSI CACGAG 2 cut(s) 28, 86
Bst2BI CACGAG 2 cut(s) 28, 86
BstC8I GCNNGC 2 cut(s) 43, 167
BstF5I GGATG 2 cut(s) 78, 174
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 237
BsuI GTATCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 78, 174
BtsIMutI CAGTG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 43, 167
Cfr10I RCCGGY 1 cut(s) 41
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 5 cut(s) 18, 45, 65, 91, 169
CviKI_1 RGCY 5 cut(s) 18, 45, 65, 91, 169
CviQI GTAC 1 cut(s) 223
FaqI GGGAC 1 cut(s) 47
FokI GGATG 2 cut(s) 85, 161
HapII CCGG 2 cut(s) 42, 196
HpaII CCGG 2 cut(s) 42, 196
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 66
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
LpnPI CCDG 6 cut(s) 55, 75, 147, 192, 209, 223
LweI GCATC 2 cut(s) 63, 183
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 1 cut(s) 224
MluCI AATT 1 cut(s) 206
MnlI CCTC 2 cut(s) 61, 116
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 2 cut(s) 42, 196
MspR9I CCNGG 1 cut(s) 197
MwoI GCNNNNNNNGC 1 cut(s) 171
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 197
NgoMIV GCCGGC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PdiI GCCGGC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 68
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 1 cut(s) 274
ScaI AGTACT 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 197
SfaNI GCATC 2 cut(s) 63, 183
SmiMI CAYNNNNRTG 1 cut(s) 71
Sse9I AATT 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 195
TasI AATT 1 cut(s) 206
TatI WGTACW 1 cut(s) 222
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 68
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.