MD10G1105400.v1.1

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0015531
Physical Location & Seq
Forward (+)
17235113 .. 17235501
389 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1105400.v1.1.491

Sequence Viewer

Length: 300 bp
ATGCTCATTTCTTCTCGCTTGGTTCACTCCGGGCACTTCACCAGCTCTCCATCACTGTCTCCATCACCTTCGCCAGCTGTAGGAAATCCAACGGCAAATGATCATGAACCATCTAAAGGGAAAGGGACTGTTAACAAGTTAAGGAGAGGGTCATTTCCGGCTACTTGTCGTTCAAAATGTGACGAGTGCGAGCCTTGCATGCCAGTTCAAGTATCTGTCCGAGCAATGTCATTGGAAGAGAACGAGTACTATCCACAGGTTTGGAAATGTGCCTGCGGTGATAGCATATTTTCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

7.62

Isoelectric Point (pI)

94.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 49 - 99 3.6e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 276
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 80, 116
AgsI TTSAA 2 cut(s) 174, 209
AluBI AGCT 2 cut(s) 45, 77
AluI AGCT 2 cut(s) 45, 77
Alw26I GTCTC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 3 cut(s) 31, 57, 290
BaeGI GKGCMC 1 cut(s) 36
BccI CCATC 3 cut(s) 58, 70, 118
BceAI ACGGC 1 cut(s) 108
BclI TGATCA 1 cut(s) 100
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 116
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 80, 116
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 36
BsiSI CCGG 2 cut(s) 30, 158
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 2 cut(s) 80, 116
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 1 cut(s) 276
BspHI TCATGA 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 203
BssMI GATC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 57, 130
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 4 cut(s) 75, 191, 200, 274
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 100
BstMWI GCNNNNNNNGC 3 cut(s) 195, 199, 282
BstNSI RCATGY 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 36
BstXI CCANNNNNNTGG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 4 cut(s) 75, 191, 200, 274
CciI TCATGA 1 cut(s) 103
Csp6I GTAC 1 cut(s) 247
CviAII CATG 2 cut(s) 104, 199
CviJI RGCY 4 cut(s) 45, 77, 161, 193
CviKI_1 RGCY 4 cut(s) 45, 77, 161, 193
CviQI GTAC 1 cut(s) 247
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
FaeI CATG 2 cut(s) 107, 202
FaiI YATR 3 cut(s) 105, 200, 287
FaqI GGGAC 1 cut(s) 139
FatI CATG 2 cut(s) 103, 198
FbaI TGATCA 1 cut(s) 100
HapII CCGG 2 cut(s) 30, 158
Hin1II CATG 2 cut(s) 107, 202
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HpaI GTTAAC 1 cut(s) 133
HpaII CCGG 2 cut(s) 30, 158
HphI GGTGA 3 cut(s) 31, 57, 290
Hpy166II GTNNAC 2 cut(s) 25, 133
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 25, 133
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 57, 130
HpyCH4V TGCA 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 199, 282
Hsp92II CATG 2 cut(s) 107, 202
Ksp22I TGATCA 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 1 cut(s) 100
LpnPI CCDG 7 cut(s) 43, 55, 87, 171, 216, 242, 286
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 102
MboI GATC 1 cut(s) 100
MboII GAAGA 2 cut(s) 3, 248
MhlI GDGCHC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 1 cut(s) 140
MseI TTAA 3 cut(s) 132, 140, 298
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 30, 158
MspR9I CCNGG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 195, 199, 282
NciI CCSGG 1 cut(s) 31
NdeII GATC 1 cut(s) 100
NlaIII CATG 2 cut(s) 107, 202
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 202
PaeI GCATGC 1 cut(s) 202
PagI TCATGA 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 3 cut(s) 132, 140, 298
Sau3AI GATC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 47, 70, 79, 261
SfcI CTRYAG 1 cut(s) 78
SphI GCATGC 1 cut(s) 202
SsiI CCGC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 57, 130
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 3 cut(s) 132, 140, 298
Tru9I TTAA 3 cut(s) 132, 140, 298
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.