RLG00000014985

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015531
Physical Location & Seq
Reverse (-)
60310402 .. 60310843
442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014985

Sequence Viewer

Length: 333 bp
ATGAAAATGCAACGACAAGCTAATGGTAGAACACTAATTTTGGTCGTCTTTCTCTCCATGCTCATCTGTTCTGGCTTGGTTCACTCGTGCGACTTCACAAGCTCTCCCTCGCCTTCACCGGCCATTGGGATGCCAACACCACACGAGCCATCTAAAGGGATTTTCAAAAAGAAAAGGAGAGGGTCTTTCCCTGCGACTTGTTACTCAAAATGTAATCAGTGCGAGCCTTGCATGCCAGTTCAAGTATCGGTCCGGGCAATGGAATTGGAAGAAAACGAGTACTATCCACTAGTCTGGAAATGTGCCTGTGGTGATAATATATTTTCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

111

Amino Acids

12.24

Weight (kDa)

8.68

Isoelectric Point (pI)

77.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 60 - 110 3.2e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 3 cut(s) 125, 155, 259
AgsI TTSAA 2 cut(s) 166, 242
AhlI ACTAGT 1 cut(s) 289
AluBI AGCT 2 cut(s) 20, 102
AluI AGCT 2 cut(s) 20, 102
AoxI GGCC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 108, 323
AvaII GGWCC 1 cut(s) 250
BauI CACGAG 2 cut(s) 85, 143
BccI CCATC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 254
BcuI ACTAGT 1 cut(s) 289
BfaI CTAG 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 155, 259
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 264
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 3 cut(s) 125, 155, 259
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 236
BshFI GGCC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 119, 253
BslI CCNNNNNNNGG 3 cut(s) 125, 155, 259
BsnI GGCC 1 cut(s) 122
BspANI GGCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 118
BssSI CACGAG 2 cut(s) 85, 143
Bst2BI CACGAG 2 cut(s) 85, 143
BstC8I GCNNGC 2 cut(s) 224, 233
BstF5I GGATG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 228, 232
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 294
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 2 cut(s) 224, 233
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 250
CpoI CGGWCCG 1 cut(s) 250
Csp6I GTAC 1 cut(s) 280
CspI CGGWCCG 1 cut(s) 250
CviAII CATG 2 cut(s) 58, 232
CviJI RGCY 6 cut(s) 20, 75, 102, 122, 148, 226
CviKI_1 RGCY 6 cut(s) 20, 75, 102, 122, 148, 226
CviQI GTAC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 250
FaeI CATG 2 cut(s) 61, 235
FaiI YATR 3 cut(s) 59, 233, 320
FatI CATG 2 cut(s) 57, 231
FokI GGATG 1 cut(s) 142
FspBI CTAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 122
HapII CCGG 2 cut(s) 119, 253
Hin1II CATG 2 cut(s) 61, 235
HpaII CCGG 2 cut(s) 119, 253
HphI GGTGA 2 cut(s) 108, 323
Hpy166II GTNNAC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 10, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 232
Hsp92II CATG 2 cut(s) 61, 235
LpnPI CCDG 7 cut(s) 57, 132, 204, 249, 266, 280, 319
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 200
MboII GAAGA 1 cut(s) 281
MluCI AATT 2 cut(s) 36, 263
MnlI CCTC 2 cut(s) 118, 173
MseI TTAA 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 2 cut(s) 119, 253
MspR9I CCNGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 228, 232
NciI CCSGG 1 cut(s) 254
NlaIII CATG 2 cut(s) 61, 235
NspI RCATGY 1 cut(s) 235
PaeI GCATGC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 128
Rsr2I CGGWCCG 1 cut(s) 250
RsrII CGGWCCG 1 cut(s) 250
SaqAI TTAA 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 254
SetI ASST 2 cut(s) 22, 104
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 289
SphI GCATGC 1 cut(s) 235
Sse9I AATT 2 cut(s) 36, 263
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 252
TaqII GACCGA 1 cut(s) 238
TasI AATT 2 cut(s) 36, 263
TatI WGTACW 1 cut(s) 279
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 250
XceI RCATGY 1 cut(s) 235
XspI CTAG 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.