Rroxscaffold_7G00211660

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015531
Physical Location & Seq
Reverse (-)
62111552 .. 62111987
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211660.1

Sequence Viewer

Length: 297 bp
ATGCAACGACAAGCTAATGGTAGAACACTAATTTTGGTCCTCTTTCTCTCCATGCTCATCTGTTCTGGCTCGGTTCACTCGTGCGACTTCACAAGCTCTCCCTCGCCTTCACCGGTGAGTTGGATTTTCAAAAAGAAAAGGAGATGGTCTTTCCCTGCGACTTGTTCCTCAAAATGTAATCAGTGCGAGCCTTGCATGCCAGTTCAAGTATCAGTCCGGCCAATGGAATTGGAAGAAAACGAGTACTATCCACAAGTCTGGAAATGTGCTTGTGGTGATAATATATTTTCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

98

Amino Acids

11.13

Weight (kDa)

8.47

Isoelectric Point (pI)

87.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 50 - 98 1.6e-18 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 218
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 223
AgeI ACCGGT 1 cut(s) 112
AgsI TTSAA 2 cut(s) 130, 206
AluBI AGCT 2 cut(s) 14, 96
AluI AGCT 2 cut(s) 14, 96
AoxI GGCC 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 102, 127, 287
AvaII GGWCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 79
BccI CCATC 1 cut(s) 138
BmcAI AGTACT 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 223
BseNI ACTGG 1 cut(s) 200
BshFI GGCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 112
BsiSI CCGG 2 cut(s) 113, 217
BslI CCNNNNNNNGG 1 cut(s) 223
BsnI GGCC 1 cut(s) 220
BspANI GGCC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 112
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 112
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
BstC8I GCNNGC 2 cut(s) 188, 197
BstDEI CTNAG 1 cut(s) 294
BstMWI GCNNNNNNNGC 2 cut(s) 192, 196
BstNSI RCATGY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 258
BsuRI GGCC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 188, 197
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 112
CviAII CATG 2 cut(s) 52, 196
CviJI RGCY 5 cut(s) 14, 69, 96, 190, 220
CviKI_1 RGCY 5 cut(s) 14, 69, 96, 190, 220
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 37
FaeI CATG 2 cut(s) 55, 199
FaiI YATR 3 cut(s) 53, 197, 284
FatI CATG 2 cut(s) 51, 195
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 113, 217
Hin1II CATG 2 cut(s) 55, 199
HpaII CCGG 2 cut(s) 113, 217
HphI GGTGA 3 cut(s) 102, 127, 287
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 4, 195
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 196
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 55, 199
LpnPI CCDG 6 cut(s) 51, 126, 168, 213, 230, 244
MboII GAAGA 1 cut(s) 245
MluCI AATT 2 cut(s) 30, 227
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 3 cut(s) 50, 112, 178
MspI CCGG 2 cut(s) 113, 217
MwoI GCNNNNNNNGC 2 cut(s) 192, 196
NlaIII CATG 2 cut(s) 55, 199
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 112
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 245
SetI ASST 2 cut(s) 16, 98
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 37
SphI GCATGC 1 cut(s) 199
Sse9I AATT 2 cut(s) 30, 227
TasI AATT 2 cut(s) 30, 227
TatI WGTACW 1 cut(s) 243
TscAI CASTG 1 cut(s) 188
TspRI CASTG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 199
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.