Rw6G005500

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015531
Physical Location & Seq
Forward (+)
8759921 .. 8760364
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G005500.1

Sequence Viewer

Length: 297 bp
ATGCAACGACAAGCTAATGGTAGAACACTAATTTTGGTCCTCTTTATCTCCATGCTCATCTGTTCTGGCTCGGTTCACTCGTGCGACTTCACAAGCTCTCCCTCTCCTTCACCGGCGAGTTGGATTTTCAAAAAGAAAAGGAGAGGGTCTTTCCCTTCGACTTGTTACTCAAAATGTAATCAGTGCGAACCTTGCATGCGAGTTCAAGTATCAGTCCGGGCAATGGAATTGGAAGAAAACGAGTACTATCCACAAGTCTGGAAATGTGCTTGTGGTGATAATATATTTTCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

98

Amino Acids

11.09

Weight (kDa)

8.69

Isoelectric Point (pI)

70.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 48 - 98 2.4e-19 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015531)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g04310
malus_domestica MD10G1105400.v1.1
prunus_persica Prupe.8G144300_v2.0.a1
pyrus_communis pycom10g09080
rosa_chinensis RchiOBHm_Chr6g0253751
rosa_laevigata RLG00000014985
rosa_roxburghii Rroxscaffold_7G00211660 Rroxscaffold_7G00211670
rosa_rugosa Rorug05G0546100 Rorug05G0546100
rosa_samantha Rh6AG061800 Rh6BG055300 Rh6CG055300 Rh6DG052900
rosa_wichuraiana Rw6G005480 Rw6G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 130, 206
AluBI AGCT 2 cut(s) 14, 96
AluI AGCT 2 cut(s) 14, 96
AspS9I GGNCC 1 cut(s) 37
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 102, 287
AvaII GGWCC 1 cut(s) 37
BauI CACGAG 1 cut(s) 79
BcnI CCSGG 1 cut(s) 218
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 228
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMI GCAATG 1 cut(s) 228
BsiSI CCGG 2 cut(s) 113, 217
BslI CCNNNNNNNGG 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 228
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssSI CACGAG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 52, 196
CviJI RGCY 3 cut(s) 14, 69, 96
CviKI_1 RGCY 3 cut(s) 14, 69, 96
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 37
FaeI CATG 2 cut(s) 55, 199
FaiI YATR 3 cut(s) 53, 197, 284
FatI CATG 2 cut(s) 51, 195
HapII CCGG 2 cut(s) 113, 217
Hin1II CATG 2 cut(s) 55, 199
HpaII CCGG 2 cut(s) 113, 217
HphI GGTGA 2 cut(s) 102, 287
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 117, 165
HpyCH4V TGCA 2 cut(s) 4, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 2 cut(s) 55, 199
LpnPI CCDG 4 cut(s) 51, 126, 230, 244
MaeIII GTNAC 1 cut(s) 164
MboII GAAGA 1 cut(s) 245
MluCI AATT 2 cut(s) 30, 227
MmeI TCCRAC 1 cut(s) 101
MnlI CCTC 3 cut(s) 50, 112, 137
MspI CCGG 2 cut(s) 113, 217
MspR9I CCNGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 192
NciI CCSGG 1 cut(s) 218
NlaIII CATG 2 cut(s) 55, 199
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PspPI GGNCC 1 cut(s) 37
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 37
ScaI AGTACT 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 218
SetI ASST 3 cut(s) 16, 98, 193
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 37
SphI GCATGC 1 cut(s) 199
Sse9I AATT 2 cut(s) 30, 227
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 158
TasI AATT 2 cut(s) 30, 227
TatI WGTACW 1 cut(s) 243
TscAI CASTG 1 cut(s) 188
TspRI CASTG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 199
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.