FvH4_2g04330
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008115
Physical Location & Seq
Reverse (-)
3361061 .. 3364966
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04330.t3

Sequence Viewer

Length: 1347 bp
ATGAGTAGTCGTCGGGGTTTTTCGAACACGAGAGCAAGAGCTAATCATAATCCTCCAAATGCCATGAAGAAAAGAGGCAAACAAAGTGGAAGAGCTGTTGCTGATGGGTATGATGATGAGTTACCTGAAAAAGTGATTCAAACTTCTCGTCCCCGCCCCTTAGGTCCTATTTCTACTCACTTAGTAGAAGGGTTATTAGAAAAAAGGGGGGATAAGCGAGAGGAGACACTAGCCTCTATGATTGAAGGCTTGAATGCGAACCTAAGCAAAAATTTGCTGGAAGAGAAGTTTGCTACCTTTCTATACAGATGCTTAAACTCTGTGAAGAAAGGTTCTACCAAAGAGGTGAATAATTCATTTCATGTCATAGGCTTGCTGGCAACAATAGTTGGTTGTGAAAATAAACTCTCTGAAATATATAGAGAGTTGCTTCCTGTACTTTCTGGAGCTCTGAAATCTGGGTCCACTACGATAAAGATATTGGATTGTTTGTCTATTGTTGCTTTCTTTGGTGCAACCAATCCAGATGAAACACAGAATGCCATGCACAATATATGGGAGTACCTCAATCCAGAGTCGGGCTATGTTGTCAACACAAAAAATAATTCAGCAGAGTTACTGGTTGCCGCAATATATGCTTGGTTGTTTCTTCTTTCAAGCATGGAGGGATTTAGGCTCAGCTACTCCTACTGGAAAGGGGCCATCTCATACTTCGCAAATTTACTAGATCACGACAACAATTTAGTATGTGGAGCAGCTAGTGAAGCATTAGCTTTAATTTTTGAAACTGGCTCTCTTGAAAAGTTCTGGAATGATGAAAGTGGTTCAAGCCCCAGTTATACACAAATGCAACAATCACTTAGAGCCCATCTTTTAAAGAGAGTTAACTGTGCTTACTTAAATCTACGAACTGAGAAAAATGCAGTCAAAATCCGTAATGTCTCAAGATATTTTGAGGGTTCTCATGTTCTGGCAGAATCTTTAGTGGTCAAGGGGAAAGTACTAACGTTGTCATCATGGTATCAAATAATTCAGCTGCAGTTTTTGAAGAGGTTTCTGGCTGATGGATTTAAAAAACATATGGAGGAAAATGAGAAGCTTCAGAATTTGTTCGAGTTCGATCCTCGCAAAAACAAGAATATAGGTCCTGAGTTGTATGTAGCTACTACTGATAAGATCTCTGTGCGCTTTTTTATGCCTGAAGAAAGAGATCAATACATGCTAACGAAGGAACAAAGAAAGAAAGAAAGGGTTTGGAGGACCTCTATTGTAGACAAAGCTAAGACACAATTGATGACAAAACATCGTTTGTTGTCAAAGGAACTAAAACGCTGCAACTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

449

Amino Acids

51.05

Weight (kDa)

9.31

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 63 - 296 1e-41 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1272
AciI CCGC 2 cut(s) 154, 627
AclI AACGTT 1 cut(s) 1007
AclWI GGATC 1 cut(s) 1115
AcsI RAATTY 3 cut(s) 271, 718, 1105
AcuI CTGAAG 2 cut(s) 1085, 1221
AfaI GTAC 3 cut(s) 438, 563, 1002
AfiI CCNNNNNNNGG 1 cut(s) 578
AgsI TTSAA 8 cut(s) 140, 245, 253, 657, 785, 800, 828, 1048
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 218, 946
AlwI GGATC 1 cut(s) 1115
AoxI GGCC 1 cut(s) 699
ApeKI GCWGC 3 cut(s) 755, 1036, 1332
ApoI RAATTY 3 cut(s) 271, 718, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
Asp700I GAANNNNTTC 1 cut(s) 1109
AspLEI GCGC 1 cut(s) 1188
AspS9I GGNCC 5 cut(s) 164, 462, 699, 1145, 1260
AsuHPI GGTGA 1 cut(s) 358
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 4 cut(s) 164, 462, 1145, 1260
AxyI CCTNAGG 1 cut(s) 160
BanII GRGCYC 2 cut(s) 451, 868
BauI CACGAG 1 cut(s) 28
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 3 cut(s) 767, 1023, 1319
BccI CCATC 4 cut(s) 98, 710, 876, 1058
BcoDI GTCTC 2 cut(s) 218, 946
BfaI CTAG 3 cut(s) 230, 725, 759
BfmI CTRYAG 1 cut(s) 1037
BglII AGATCT 1 cut(s) 1176
BisI GCNGC 4 cut(s) 627, 756, 1037, 1333
BlpI GCTNAGC 1 cut(s) 677
BlsI GCNGC 4 cut(s) 628, 757, 1038, 1334
BmcAI AGTACT 1 cut(s) 1002
Bme18I GGWCC 4 cut(s) 164, 462, 1145, 1260
BmgT120I GGNCC 5 cut(s) 164, 462, 699, 1145, 1260
BmiI GGNNCC 2 cut(s) 463, 700
BmrI ACTGGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 677
Bpu14I TTCGAA 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 928
Bsc4I CCNNNNNNNGG 1 cut(s) 578
Bse1I ACTGG 4 cut(s) 624, 695, 793, 834
Bse21I CCTNAGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 578
BseMII CTCAG 3 cut(s) 691, 903, 1140
BseNI ACTGG 4 cut(s) 624, 695, 793, 834
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 767, 1023, 1319
BshFI GGCC 1 cut(s) 701
BsiHKAI GWGCWC 1 cut(s) 451
BslFI GGGAC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 578
BsmAI GTCTC 2 cut(s) 218, 946
BsmFI GGGAC 1 cut(s) 135
BsmI GAATGC 2 cut(s) 259, 544
BsnI GGCC 1 cut(s) 701
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 451, 868
Bsp143I GATC 4 cut(s) 727, 1120, 1176, 1210
Bsp1720I GCTNAGC 1 cut(s) 677
BspACI CCGC 2 cut(s) 154, 627
BspANI GGCC 1 cut(s) 701
BspCNI CTCAG 3 cut(s) 690, 904, 1141
BspLI GGNNCC 2 cut(s) 463, 700
BspMAI CTGCAG 1 cut(s) 1041
BspPI GGATC 1 cut(s) 1115
BspQI GCTCTTC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 23
BsrI ACTGG 4 cut(s) 624, 695, 793, 834
BssMI GATC 4 cut(s) 727, 1120, 1176, 1210
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 890
Bst6I CTCTTC 3 cut(s) 85, 276, 1043
BstAPI GCANNNNNTGC 1 cut(s) 635
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 374, 378
BstDEI CTNAG 8 cut(s) 160, 181, 263, 677, 860, 912, 1149, 1281
BstHHI GCGC 1 cut(s) 1188
BstKTI GATC 4 cut(s) 730, 1123, 1179, 1213
BstMAI GTCTC 2 cut(s) 218, 946
BstMBI GATC 4 cut(s) 727, 1120, 1176, 1210
BstMWI GCNNNNNNNGC 2 cut(s) 635, 764
BstNSI RCATGY 1 cut(s) 1222
BstSFI CTRYAG 1 cut(s) 1037
BstV1I GCAGC 3 cut(s) 767, 1023, 1319
BstX2I RGATCY 1 cut(s) 1176
BstYI RGATCY 1 cut(s) 1176
Bsu36I CCTNAGG 1 cut(s) 160
BsuRI GGCC 1 cut(s) 701
Cac8I GCNNGC 2 cut(s) 374, 378
CfoI GCGC 1 cut(s) 1188
Cfr13I GGNCC 5 cut(s) 164, 462, 699, 1145, 1260
Csp6I GTAC 3 cut(s) 437, 562, 1001
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 7 cut(s) 64, 362, 544, 661, 965, 1017, 1219
CviQI GTAC 3 cut(s) 437, 562, 1001
DdeI CTNAG 8 cut(s) 160, 181, 263, 677, 860, 912, 1149, 1281
DpnI GATC 4 cut(s) 729, 1122, 1178, 1212
DpnII GATC 4 cut(s) 727, 1120, 1176, 1210
DraI TTTAAA 2 cut(s) 876, 1072
Eam1104I CTCTTC 3 cut(s) 85, 276, 1043
EarI CTCTTC 3 cut(s) 85, 276, 1043
Ecl136II GAGCTC 1 cut(s) 449
Eco24I GRGCYC 2 cut(s) 451, 868
Eco47I GGWCC 4 cut(s) 164, 462, 1145, 1260
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 2 cut(s) 1085, 1221
Eco81I CCTNAGG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 3 cut(s) 164, 1145, 1260
EcoT38I GRGCYC 2 cut(s) 451, 868
FaeI CATG 7 cut(s) 67, 365, 547, 664, 968, 1020, 1222
FaqI GGGAC 1 cut(s) 135
FatI CATG 7 cut(s) 63, 361, 543, 660, 964, 1016, 1218
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 1 cut(s) 1080
FblI GTMKAC 1 cut(s) 1272
Fnu4HI GCNGC 4 cut(s) 627, 756, 1037, 1333
FriOI GRGCYC 2 cut(s) 451, 868
Fsp4HI GCNGC 4 cut(s) 627, 756, 1037, 1333
FspBI CTAG 3 cut(s) 230, 725, 759
GlaI GCGC 1 cut(s) 1187
GluI GCNGC 4 cut(s) 627, 756, 1037, 1333
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 701
HhaI GCGC 1 cut(s) 1188
Hin1II CATG 7 cut(s) 67, 365, 547, 664, 968, 1020, 1222
Hin6I GCGC 1 cut(s) 1186
HinP1I GCGC 1 cut(s) 1186
HincII GTYRAC 2 cut(s) 592, 886
HindII GTYRAC 2 cut(s) 592, 886
HindIII AAGCTT 1 cut(s) 1097
HinfI GANTC 3 cut(s) 136, 575, 977
HpaI GTTAAC 1 cut(s) 886
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 4 cut(s) 465, 592, 886, 1273
Hpy188I TCNGA 3 cut(s) 412, 453, 1104
Hpy188III TCNNGA 8 cut(s) 444, 524, 572, 731, 797, 808, 945, 1148
Hpy8I GTNNAC 4 cut(s) 465, 592, 886, 1273
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 182, 239, 1222
HpyCH4III ACNGT 1 cut(s) 890
HpyCH4IV ACGT 1 cut(s) 1007
HpyCH4V TGCA 6 cut(s) 515, 547, 850, 923, 1039, 1335
HpyF10VI GCNNNNNNNGC 2 cut(s) 635, 764
HpyF3I CTNAG 8 cut(s) 160, 181, 263, 677, 860, 912, 1149, 1281
HpySE526I ACGT 1 cut(s) 1007
Hsp92II CATG 7 cut(s) 67, 365, 547, 664, 968, 1020, 1222
HspAI GCGC 1 cut(s) 1186
KspAI GTTAAC 1 cut(s) 886
Kzo9I GATC 4 cut(s) 727, 1120, 1176, 1210
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 446, 752
Lsp1109I GCAGC 3 cut(s) 767, 1023, 1319
LweI GCATC 1 cut(s) 299
MaeI CTAG 3 cut(s) 230, 725, 759
MaeII ACGT 1 cut(s) 1007
MaeIII GTNAC 2 cut(s) 120, 615
MalI GATC 4 cut(s) 729, 1122, 1178, 1212
MboI GATC 4 cut(s) 727, 1120, 1176, 1210
MboII GAAGA 7 cut(s) 79, 102, 293, 337, 641, 1060, 1214
MfeI CAATTG 1 cut(s) 1289
MflI RGATCY 1 cut(s) 1176
MhlI GDGCHC 2 cut(s) 451, 868
MluCI AATT 9 cut(s) 271, 352, 604, 718, 739, 777, 1029, 1105, 1289
MlyI GAGTC 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 1109
MseI TTAA 6 cut(s) 314, 776, 875, 885, 899, 1071
MspA1I CMGCKG 1 cut(s) 1036
MunI CAATTG 1 cut(s) 1289
Mva1269I GAATGC 2 cut(s) 259, 544
MwoI GCNNNNNNNGC 2 cut(s) 635, 764
NdeI CATATG 1 cut(s) 1080
NdeII GATC 4 cut(s) 727, 1120, 1176, 1210
NlaIII CATG 7 cut(s) 67, 365, 547, 664, 968, 1020, 1222
NlaIV GGNNCC 2 cut(s) 463, 700
NspI RCATGY 1 cut(s) 1222
NspV TTCGAA 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 85
PctI GAATGC 2 cut(s) 259, 544
PdmI GAANNNNTTC 1 cut(s) 1109
PfeI GAWTC 2 cut(s) 136, 977
PkrI GCNGC 4 cut(s) 628, 757, 1038, 1334
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PpuMI RGGWCCY 3 cut(s) 164, 1145, 1260
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 1007
Psp5II RGGWCCY 3 cut(s) 164, 1145, 1260
PspN4I GGNNCC 2 cut(s) 463, 700
PspPI GGNCC 5 cut(s) 164, 462, 699, 1145, 1260
PspPPI RGGWCCY 3 cut(s) 164, 1145, 1260
PstI CTGCAG 1 cut(s) 1041
PsuI RGATCY 1 cut(s) 1176
PvuII CAGCTG 1 cut(s) 1036
RsaI GTAC 3 cut(s) 438, 563, 1002
RsaNI GTAC 3 cut(s) 437, 562, 1001
SacI GAGCTC 1 cut(s) 451
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 6 cut(s) 314, 776, 875, 885, 899, 1071
SatI GCNGC 4 cut(s) 627, 756, 1037, 1333
Sau3AI GATC 4 cut(s) 727, 1120, 1176, 1210
Sau96I GGNCC 5 cut(s) 164, 462, 699, 1145, 1260
ScaI AGTACT 1 cut(s) 1002
SchI GAGTC 1 cut(s) 584
SduI GDGCHC 2 cut(s) 451, 868
SfaNI GCATC 1 cut(s) 299
SfcI CTRYAG 1 cut(s) 1037
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 4 cut(s) 164, 462, 1145, 1260
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
Sse9I AATT 9 cut(s) 271, 352, 604, 718, 739, 777, 1029, 1105, 1289
SsiI CCGC 2 cut(s) 154, 627
SspMI CTAG 3 cut(s) 230, 725, 759
SstI GAGCTC 1 cut(s) 451
TaaI ACNGT 1 cut(s) 890
TaiI ACGT 1 cut(s) 1010
TaqI TCGA 3 cut(s) 23, 1113, 1119
TasI AATT 9 cut(s) 271, 352, 604, 718, 739, 777, 1029, 1105, 1289
TatI WGTACW 2 cut(s) 436, 1000
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 2 cut(s) 136, 977
Tru1I TTAA 6 cut(s) 314, 776, 875, 885, 899, 1071
Tru9I TTAA 6 cut(s) 314, 776, 875, 885, 899, 1071
TseI GCWGC 3 cut(s) 755, 1036, 1332
TspDTI ATGAA 5 cut(s) 80, 345, 350, 543, 831
TspGWI ACGGA 1 cut(s) 923
VpaK11BI GGWCC 4 cut(s) 164, 462, 1145, 1260
XapI RAATTY 3 cut(s) 271, 718, 1105
XceI RCATGY 1 cut(s) 1222
XmiI GTMKAC 1 cut(s) 1272
XmnI GAANNNNTTC 1 cut(s) 1109
XspI CTAG 3 cut(s) 230, 725, 759
ZrmI AGTACT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.