RchiOBHm_Chr6g0253771
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008115
Physical Location & Seq
Reverse (-)
8872430 .. 8876467
4038 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22758

Sequence Viewer

Length: 1350 bp
ATGAGTAGGCGTCGCGGGTTTTCGAACATGAGAGCAAAAGGAAGTCTTCATCCTCCAAATGCCATGAGGAAAAAAGGCAAACAAACTGGAGGAAGAACTGTTGCTGATGAGTATGAGGATGAGTTACCGGAAAAACTGACTCAGGTTCCTCGTCCCTGCCCCTCGGGGCCAATTTCTACTTACTTAGTAGAAGGGTTATATGAGAAAAGGGGAGATAAGCGAGAGGAGACACTAACCTTTATGATTGAAGGCTTAAATAGAAACCTAAGCAAAAACTTGCTGGAAGAGAAGTTTGCTACCTTTCTATACAGATGCTTGAACTCTGTGAAGAAAGGTTCTACCAAGGAGGTGAATAATTCATTTCATGTGATAGGCTTGCTGGCAACAATAGTTGGTTGTGAAGATAAACTCTCTGAAATATATAGAGAGTTGCTTCCTGTACTTTCCGAAGCTCTGAAATCTGGGTCCACAACAATAAAGATATTGGATTGCTTGGCTATTGTTGCTTTCTTTGGTGCAACCAATCCAGATGAAACAGAGAGTGCCATGCATATTATATGGGAGTACCTCAATCCCGAGTCAGGTTATGATGTCAACACAAAAAATAATTCAGCGGAGTTACTAGTTGCCGCAGTATATGCTTGGTTGTTTCTTCTTTCAAGCATGGAGGGATTTAGACTCAGCTACACCTACTGGAAAGGGGCCATTTCATACTTCGCAAATTTACTAGATCACGACAACAAATTAGTATGTGGAGCAGCTAGTGAAGCATTAGCTTTAATTTTTGAAACTGGCTCTCTTGAAAAGTTCTGGAATGAAGAAAATGGTTCAAGCCCCAGTTATTCACAAATGCAACAATCACTTGGAGCCCATCTTTTAAAGAAAGTTAAATGTGCTTACAAAAATCTACGAACTGAGAATAATGCAGACAAAATCCGCAATGTTGTAAGATATTTTGAGAGTTCTCATGTCCTGGCAGAATCTTTAGTGGTCAAAGGGAAAGTACTAACGTTGTCATCATGGTATCAAATAATTCAGCTGCAGTTTTTGAAGAGGTTTCTAGCTGATGGATTTAAAAAACATATGGAGGAAAATGAGAAGCTTCAGAATTTGTTCGAATTCGATCCTCGTAAAAGCAAGAATTTAGGTCCAGAGTTGTATGTGGCTACTACTGATAAGATCTATGTGCGCTTCTTTATGCCTGAAGAAAGAGATCAATACATGCTAACGAAGGAACAAAGAAAGAAAGACAGGCTTCGGAGGAGCTCCATTGTAGACAAAGCCAAGACACAATTGATGACAAAACATCGTTTGTTGTCAAAGGAACTAAAAAGCTGCGACTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

449

Amino Acids

51.42

Weight (kDa)

8.94

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 63 - 297 4e-43 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1275
AccII CGCG 1 cut(s) 15
AciI CCGC 4 cut(s) 15, 614, 630, 937
AclI AACGTT 1 cut(s) 1010
AclWI GGATC 1 cut(s) 1118
AcsI RAATTY 4 cut(s) 721, 1108, 1118, 1141
AcuI CTGAAG 2 cut(s) 1088, 1224
AcyI GRCGYC 1 cut(s) 10
AfaI GTAC 3 cut(s) 441, 566, 1005
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 7 cut(s) 248, 319, 660, 788, 803, 831, 1051
AhlI ACTAGT 1 cut(s) 622
AjnI CCWGG 1 cut(s) 972
AluBI AGCT 9 cut(s) 452, 684, 761, 776, 1039, 1064, 1102, 1266, 1335
AluI AGCT 9 cut(s) 452, 684, 761, 776, 1039, 1064, 1102, 1266, 1335
Alw21I GWGCWC 1 cut(s) 1268
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 1118
Ama87I CYCGRG 2 cut(s) 163, 575
AoxI GGCC 2 cut(s) 167, 702
ApeKI GCWGC 3 cut(s) 758, 1039, 1335
ApoI RAATTY 4 cut(s) 721, 1108, 1118, 1141
Asp700I GAANNNNTTC 1 cut(s) 1112
AspLEI GCGC 1 cut(s) 1191
AspS9I GGNCC 4 cut(s) 167, 465, 702, 1148
AsuHPI GGTGA 1 cut(s) 361
AsuII TTCGAA 2 cut(s) 23, 1116
AvaI CYCGRG 2 cut(s) 163, 575
AvaII GGWCC 2 cut(s) 465, 1148
BanII GRGCYC 2 cut(s) 871, 1268
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 1268
BbvI GCAGC 3 cut(s) 770, 1026, 1322
BccI CCATC 2 cut(s) 879, 1061
BciT130I CCWGG 1 cut(s) 974
BcoDI GTCTC 1 cut(s) 221
BcuI ACTAGT 1 cut(s) 622
BfaI CTAG 4 cut(s) 623, 728, 762, 1061
BfmI CTRYAG 1 cut(s) 1040
BglII AGATCT 1 cut(s) 1179
BisI GCNGC 4 cut(s) 630, 759, 1040, 1336
BlsI GCNGC 4 cut(s) 631, 760, 1041, 1337
BmcAI AGTACT 1 cut(s) 1005
Bme1390I CCNGG 1 cut(s) 974
Bme18I GGWCC 2 cut(s) 465, 1148
BmeT110I CYCGRG 2 cut(s) 163, 575
BmgT120I GGNCC 4 cut(s) 167, 465, 702, 1148
BmiI GGNNCC 5 cut(s) 147, 168, 466, 703, 868
BmrFI CCNGG 1 cut(s) 974
BmrI ACTGGG 1 cut(s) 831
BmsI GCATC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 831
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 266
Bpu14I TTCGAA 2 cut(s) 23, 1116
BsaHI GRCGYC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 162, 342
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 4 cut(s) 91, 698, 796, 837
Bse3DI GCAATG 1 cut(s) 946
BseBI CCWGG 1 cut(s) 974
BseDI CCNNGG 2 cut(s) 162, 342
BseGI GGATG 2 cut(s) 49, 124
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 946
BseMII CTCAG 3 cut(s) 155, 694, 906
BseNI ACTGG 4 cut(s) 91, 698, 796, 837
BseRI GAGGAG 2 cut(s) 239, 1276
BseXI GCAGC 3 cut(s) 770, 1026, 1322
Bsh1236I CGCG 1 cut(s) 15
BshFI GGCC 2 cut(s) 169, 704
BsiHKAI GWGCWC 1 cut(s) 1268
BsiHKCI CYCGRG 2 cut(s) 163, 575
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 2 cut(s) 169, 704
BsoBI CYCGRG 2 cut(s) 163, 575
Bsp119I TTCGAA 2 cut(s) 23, 1116
Bsp1286I GDGCHC 2 cut(s) 871, 1268
Bsp143I GATC 4 cut(s) 730, 1123, 1179, 1213
BspACI CCGC 4 cut(s) 15, 614, 630, 937
BspANI GGCC 2 cut(s) 169, 704
BspCNI CTCAG 3 cut(s) 154, 693, 907
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 5 cut(s) 147, 168, 466, 703, 868
BspMAI CTGCAG 1 cut(s) 1044
BspPI GGATC 1 cut(s) 1118
BspT104I TTCGAA 2 cut(s) 23, 1116
BsrDI GCAATG 1 cut(s) 946
BsrI ACTGG 4 cut(s) 91, 698, 796, 837
BssECI CCNNGG 2 cut(s) 162, 342
BssMI GATC 4 cut(s) 730, 1123, 1179, 1213
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 974
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 2 cut(s) 279, 1046
BstACI GRCGYC 1 cut(s) 10
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBI TTCGAA 2 cut(s) 23, 1116
BstC8I GCNNGC 2 cut(s) 377, 381
BstDEI CTNAG 5 cut(s) 141, 184, 266, 680, 915
BstF5I GGATG 2 cut(s) 49, 124
BstFNI CGCG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 1191
BstKTI GATC 4 cut(s) 733, 1126, 1182, 1216
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 730, 1123, 1179, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 503, 638, 767
BstNI CCWGG 1 cut(s) 974
BstNSI RCATGY 1 cut(s) 1225
BstSCI CCNGG 1 cut(s) 972
BstSFI CTRYAG 1 cut(s) 1040
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 3 cut(s) 770, 1026, 1322
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 1179
BstYI RGATCY 1 cut(s) 1179
BsuRI GGCC 2 cut(s) 169, 704
BtsCI GGATG 2 cut(s) 49, 124
Cac8I GCNNGC 2 cut(s) 377, 381
CfoI GCGC 1 cut(s) 1191
Cfr13I GGNCC 4 cut(s) 167, 465, 702, 1148
Csp6I GTAC 3 cut(s) 440, 565, 1004
CviAII CATG 8 cut(s) 28, 64, 365, 547, 664, 968, 1020, 1222
CviQI GTAC 3 cut(s) 440, 565, 1004
DdeI CTNAG 5 cut(s) 141, 184, 266, 680, 915
DpnI GATC 4 cut(s) 732, 1125, 1181, 1215
DpnII GATC 4 cut(s) 730, 1123, 1179, 1213
DraI TTTAAA 2 cut(s) 879, 1075
Eam1104I CTCTTC 2 cut(s) 279, 1046
EarI CTCTTC 2 cut(s) 279, 1046
Ecl136II GAGCTC 1 cut(s) 1266
Eco130I CCWWGG 1 cut(s) 342
Eco24I GRGCYC 2 cut(s) 871, 1268
Eco47I GGWCC 2 cut(s) 465, 1148
Eco53kI GAGCTC 1 cut(s) 1266
Eco57I CTGAAG 2 cut(s) 1088, 1224
Eco88I CYCGRG 2 cut(s) 163, 575
EcoICRI GAGCTC 1 cut(s) 1266
EcoRI GAATTC 1 cut(s) 1118
EcoRII CCWGG 1 cut(s) 972
EcoT14I CCWWGG 1 cut(s) 342
EcoT22I ATGCAT 1 cut(s) 552
EcoT38I GRGCYC 2 cut(s) 871, 1268
ErhI CCWWGG 1 cut(s) 342
FaeI CATG 8 cut(s) 31, 67, 368, 550, 667, 971, 1023, 1225
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 1239, 1271
FaqI GGGAC 1 cut(s) 138
FatI CATG 8 cut(s) 27, 63, 364, 546, 663, 967, 1019, 1221
FauI CCCGC 1 cut(s) 8
FauNDI CATATG 1 cut(s) 1083
FblI GTMKAC 1 cut(s) 1275
Fnu4HI GCNGC 4 cut(s) 630, 759, 1040, 1336
FokI GGATG 2 cut(s) 36, 131
FriOI GRGCYC 2 cut(s) 871, 1268
Fsp4HI GCNGC 4 cut(s) 630, 759, 1040, 1336
FspBI CTAG 4 cut(s) 623, 728, 762, 1061
GlaI GCGC 1 cut(s) 1190
GluI GCNGC 4 cut(s) 630, 759, 1040, 1336
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 2 cut(s) 169, 704
HapII CCGG 1 cut(s) 128
HhaI GCGC 1 cut(s) 1191
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 8 cut(s) 31, 67, 368, 550, 667, 971, 1023, 1225
Hin6I GCGC 1 cut(s) 1189
HinP1I GCGC 1 cut(s) 1189
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 1100
HinfI GANTC 4 cut(s) 139, 578, 678, 980
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 468, 595, 1276
Hpy188I TCNGA 5 cut(s) 415, 448, 456, 1107, 1260
Hpy188III TCNNGA 6 cut(s) 527, 575, 734, 800, 811, 1151
Hpy8I GTNNAC 3 cut(s) 468, 595, 1276
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 185, 242, 1225
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 1010
HpyCH4V TGCA 5 cut(s) 518, 550, 853, 926, 1042
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 638, 767
HpyF3I CTNAG 5 cut(s) 141, 184, 266, 680, 915
HpySE526I ACGT 1 cut(s) 1010
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 8 cut(s) 31, 67, 368, 550, 667, 971, 1023, 1225
HspAI GCGC 1 cut(s) 1189
Kzo9I GATC 4 cut(s) 730, 1123, 1179, 1213
LmnI GCTCC 4 cut(s) 755, 866, 1263, 1271
Lsp1109I GCAGC 3 cut(s) 770, 1026, 1322
LweI GCATC 1 cut(s) 302
MaeI CTAG 4 cut(s) 623, 728, 762, 1061
MaeII ACGT 1 cut(s) 1010
MaeIII GTNAC 2 cut(s) 123, 618
MalI GATC 4 cut(s) 732, 1125, 1181, 1215
MboI GATC 4 cut(s) 730, 1123, 1179, 1213
MboII GAAGA 9 cut(s) 38, 105, 296, 340, 413, 644, 830, 1063, 1217
MfeI CAATTG 1 cut(s) 1292
MflI RGATCY 1 cut(s) 1179
MhlI GDGCHC 2 cut(s) 871, 1268
MlyI GAGTC 3 cut(s) 133, 587, 672
Mph1103I ATGCAT 1 cut(s) 552
MroXI GAANNNNTTC 1 cut(s) 1112
MseI TTAA 5 cut(s) 254, 779, 878, 888, 1074
MspA1I CMGCKG 2 cut(s) 614, 1039
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 974
MunI CAATTG 1 cut(s) 1292
MvaI CCWGG 1 cut(s) 974
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 3 cut(s) 503, 638, 767
NdeI CATATG 1 cut(s) 1083
NdeII GATC 4 cut(s) 730, 1123, 1179, 1213
NlaIII CATG 8 cut(s) 31, 67, 368, 550, 667, 971, 1023, 1225
NlaIV GGNNCC 5 cut(s) 147, 168, 466, 703, 868
NsiI ATGCAT 1 cut(s) 552
NspI RCATGY 1 cut(s) 1225
NspV TTCGAA 2 cut(s) 23, 1116
PdmI GAANNNNTTC 1 cut(s) 1112
PfeI GAWTC 1 cut(s) 980
PkrI GCNGC 4 cut(s) 631, 760, 1041, 1337
PleI GAGTC 3 cut(s) 133, 586, 672
PpsI GAGTC 3 cut(s) 133, 586, 672
Psp124BI GAGCTC 1 cut(s) 1268
Psp1406I AACGTT 1 cut(s) 1010
Psp6I CCWGG 1 cut(s) 972
PspGI CCWGG 1 cut(s) 972
PspN4I GGNNCC 5 cut(s) 147, 168, 466, 703, 868
PspPI GGNCC 4 cut(s) 167, 465, 702, 1148
PstI CTGCAG 1 cut(s) 1044
PsuI RGATCY 1 cut(s) 1179
PvuII CAGCTG 1 cut(s) 1039
RsaI GTAC 3 cut(s) 441, 566, 1005
RsaNI GTAC 3 cut(s) 440, 565, 1004
SacI GAGCTC 1 cut(s) 1268
SaqAI TTAA 5 cut(s) 254, 779, 878, 888, 1074
SatI GCNGC 4 cut(s) 630, 759, 1040, 1336
Sau3AI GATC 4 cut(s) 730, 1123, 1179, 1213
Sau96I GGNCC 4 cut(s) 167, 465, 702, 1148
ScaI AGTACT 1 cut(s) 1005
SchI GAGTC 3 cut(s) 133, 587, 672
ScrFI CCNGG 1 cut(s) 974
SduI GDGCHC 2 cut(s) 871, 1268
SfaNI GCATC 1 cut(s) 302
SfcI CTRYAG 1 cut(s) 1040
SfuI TTCGAA 2 cut(s) 23, 1116
SinI GGWCC 2 cut(s) 465, 1148
SpeI ACTAGT 1 cut(s) 622
SsiI CCGC 4 cut(s) 15, 614, 630, 937
SspMI CTAG 4 cut(s) 623, 728, 762, 1061
SstI GAGCTC 1 cut(s) 1268
StyD4I CCNGG 1 cut(s) 972
StyI CCWWGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 1013
TaqI TCGA 3 cut(s) 23, 1116, 1122
TatI WGTACW 2 cut(s) 439, 1003
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 980
Tru1I TTAA 5 cut(s) 254, 779, 878, 888, 1074
Tru9I TTAA 5 cut(s) 254, 779, 878, 888, 1074
TseI GCWGC 3 cut(s) 758, 1039, 1335
TspDTI ATGAA 6 cut(s) 38, 348, 353, 546, 699, 831
VpaK11BI GGWCC 2 cut(s) 465, 1148
XapI RAATTY 4 cut(s) 721, 1108, 1118, 1141
XceI RCATGY 1 cut(s) 1225
XmiI GTMKAC 1 cut(s) 1275
XmnI GAANNNNTTC 1 cut(s) 1112
XspI CTAG 4 cut(s) 623, 728, 762, 1061
ZrmI AGTACT 1 cut(s) 1005
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.