Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008115

Physical Location & Seq

Genomic Coordinates Reverse (-)

16080678 .. 16084728

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G144400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTCGAGAAGAGACAAGGCTCGTCCTTCAAGCTCCAGGAAGCGTAGCCAAAAAAGTAATGATATTTTGTTACGTAGATGGGCTGGTAGAAAACCTGTACTTGCTGCTGGTGACGATGAGGGCTATGAAGAAGTGCCTCGGCCATCGCAACCAAAGCGACTTTGCCATTACCTAGAAGTGTTGTATGAGAAAAGAGGATCCAACCGAGAGGAGGCACTGGCTTCAATAATTGAGGTGTTAACTTGCAGATTAGAGAATGACTATCTGGAAGAGAATTTTGCTAGCTTTCTATACAGAGGCTTAAATTCCCTAAAAATAGGTTCTTCTAAAGAGAAGCAGCTATCACTCCATGTTATAGGTTTGCTGGCCATAATCATTTGTTGTGAAGATAAACTTTCTGAAGTATACAGAGTGTTGCTTCCTGTACTTTCTGAGTCTCTAAAATCTGGAACCACGACATTAAAGATGTTGAATTGTTTGGCTATTGTGGGTTTTTTTGGTTCAACTAACTCAGAGGAGACTGAAGGAGCCATGCAAATTATTTGGAAGTTCATTCATCCTGAATCTGTCAATGACGTCAACACAAAAAAGCATTCGCCAGAGGTTCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACAAGCATGGAGGGATGGAGACTCAGCCACAACTCTTGGAATGGGGCTGTTTGCTACTTCTCAAACCTATTAGAGCACGGTGATAAATTAGTGCGTGTAGCAGCTTGTGAAGCGCTGGCCTTAATATTTGAAACTGGAAATCTTGATAAGTTTTGGAAGGAAGCAAAGGATCACGGCAGCTATTCACATATGCAACAATCACTGAGAGAAAATGTTTTAAAGAAATTAAAGTGTCTTTATGTGGACACTAGAAGTGAGAATATTCCAAGAAGTGAGAATATTACAAAAAAAGTCTGCGAAGTTGTGAATTATTTTGAGAGTTTTCAATGTTTGGGAACATCTTTAACAATCAATGGAAAAGATCTAAAGTTGTCATCATGGTATCAAATGATTCAGTTGCAGTTTTTGAAGAATTTTCTAAATGATGGATTCAAAATACATATGAAGGGAAATGAGAAACTTCAACATTTGTTTGAATTCAATCCACGTAGAATAAAGAATTTAGGTCCAGAACTCTATGTATCTACCACTGATAAGATTACCGTCCGTTTCTTTTTACCCGAAGAAAGAAATGCTGAAACACTGACGAAGGAAAATAAAAAGAAAGAGAGAGTTTGGAGGAATTCTCTTCTGGAGAAGGCAAGAACACAATTAATGAGCAAGCATCGTCGCATGTCAGAGGAAATGAACTGCTGCGACTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IFRD IFRD_C

Protein Analysis

450

Amino Acids

51.93

Weight (kDa)

8.89

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04330 FvH4_2g04330 FvH4_2g04330 FvH4_2g04330 FvH4_2g04330 FvH4_2g04330 FvH4_2g04330 FvH4_2g04330
malus_domestica	MD10G1105600.v1.1
prunus_persica	Prupe.8G144400_v2.0.a1
pyrus_communis	pycom02g20480 pycom10g09100
rosa_chinensis	RchiOBHm_Chr6g0253771
rosa_laevigata	RLG00000014984
rosa_multiflora	Rmu_sc0001351.1_g000014
rosa_roxburghii	Rroxscaffold_7G00211650
rosa_rugosa	Rorug05G0546100 Rorug05G0546200 Rorug05G0546300
rosa_samantha	Rh6AG062000 Rh6BG055500 Rh6CG055400 Rh6DG053000
rosa_wichuraiana	Rw6G005510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	579
AccI	GTMKAC	1 cut(s)	405
AclWI	GGATC	3 cut(s)	192, 205, 819
AcoI	YGGCCR	2 cut(s)	140, 366
AcsI	RAATTY	6 cut(s)	274, 304, 1054, 1118, 1141, 1264
AcuI	CTGAAG	2 cut(s)	420, 543
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	2 cut(s)	99, 426
AfeI	AGCGCT	1 cut(s)	756
AfiI	CCNNNNNNNGG	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	5 cut(s)	33, 285, 340, 746, 822
AluI	AGCT	5 cut(s)	33, 285, 340, 746, 822
Alw21I	GWGCWC	1 cut(s)	720
Alw26I	GTCTC	4 cut(s)	6, 441, 512, 655
AlwI	GGATC	3 cut(s)	192, 205, 819
Aor51HI	AGCGCT	1 cut(s)	756
AoxI	GGCC	3 cut(s)	140, 366, 759
ApeKI	GCWGC	6 cut(s)	104, 337, 614, 743, 819, 1335
ApoI	RAATTY	6 cut(s)	274, 304, 1054, 1118, 1141, 1264
AseI	ATTAAT	1 cut(s)	1295
AspLEI	GCGC	1 cut(s)	757
AspS9I	GGNCC	1 cut(s)	1148
AsuHPI	GGTGA	2 cut(s)	122, 734
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	1148
BalI	TGGCCA	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	720
BbvI	GCAGC	6 cut(s)	91, 349, 601, 755, 831, 1322
BccI	CCATC	4 cut(s)	72, 151, 651, 1061
BceAI	ACGGC	1 cut(s)	832
BciT130I	CCWGG	1 cut(s)	37
BcoDI	GTCTC	4 cut(s)	6, 441, 512, 655
BfaI	CTAG	4 cut(s)	173, 282, 608, 891
BfoI	RGCGCY	1 cut(s)	758
BglII	AGATCT	1 cut(s)	1003
BisI	GCNGC	6 cut(s)	105, 338, 615, 744, 820, 1336
BlsI	GCNGC	6 cut(s)	106, 339, 616, 745, 821, 1337
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	1148
BmgT120I	GGNCC	1 cut(s)	1148
BmiI	GGNNCC	3 cut(s)	199, 451, 529
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	1315
BmtI	GCTAGC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	1252, 1284
BpmI	CTGGAG	2 cut(s)	19, 1295
BsaAI	YACGTR	2 cut(s)	74, 1130
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	222, 781
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	556, 662
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	4 cut(s)	423, 525, 679, 836
BseNI	ACTGG	2 cut(s)	222, 781
BseRI	GAGGAG	2 cut(s)	224, 530
BseXI	GCAGC	6 cut(s)	91, 349, 601, 755, 831, 1322
BshFI	GGCC	3 cut(s)	142, 368, 761
BsiHKAI	GWGCWC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	4 cut(s)	6, 441, 512, 655
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	142, 368, 761
Bsp1286I	GDGCHC	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	197, 811, 1003
BspANI	GGCC	3 cut(s)	142, 368, 761
BspCNI	CTCAG	4 cut(s)	424, 524, 678, 837
BspLI	GGNNCC	3 cut(s)	199, 451, 529
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	3 cut(s)	192, 205, 819
BsrI	ACTGG	2 cut(s)	222, 781
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	197, 811, 1003
BssNAI	GTATAC	1 cut(s)	406
BssNI	GRCGYC	1 cut(s)	576
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	2 cut(s)	722, 1186
Bst6I	CTCTTC	3 cut(s)	4, 264, 1275
BstACI	GRCGYC	1 cut(s)	576
BstBAI	YACGTR	2 cut(s)	74, 1130
BstC8I	GCNNGC	4 cut(s)	283, 366, 759, 1304
BstDEI	CTNAG	4 cut(s)	432, 511, 665, 845
BstF5I	GGATG	2 cut(s)	556, 662
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	757
BstKTI	GATC	3 cut(s)	200, 814, 1006
BstMAI	GTCTC	4 cut(s)	6, 441, 512, 655
BstMBI	GATC	3 cut(s)	197, 811, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 752
BstNI	CCWGG	1 cut(s)	37
BstNSI	RCATGY	1 cut(s)	1318
BstSCI	CCNGG	1 cut(s)	35
BstSNI	TACGTA	1 cut(s)	74
BstV1I	GCAGC	6 cut(s)	91, 349, 601, 755, 831, 1322
BstX2I	RGATCY	2 cut(s)	197, 1003
BstYI	RGATCY	2 cut(s)	197, 1003
BstZ17I	GTATAC	1 cut(s)	406
BsuRI	GGCC	3 cut(s)	142, 368, 761
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	556, 662
BtsIMutI	CAGTG	4 cut(s)	215, 842, 1170, 1223
Cac8I	GCNNGC	4 cut(s)	283, 366, 759, 1304
CfoI	GCGC	1 cut(s)	757
Cfr13I	GGNCC	1 cut(s)	1148
Csp6I	GTAC	2 cut(s)	98, 425
CspCI	CAANNNNNGTGG	2 cut(s)	659, 694
CviAII	CATG	5 cut(s)	350, 532, 649, 1020, 1315
CviQI	GTAC	2 cut(s)	98, 425
DdeI	CTNAG	4 cut(s)	432, 511, 665, 845
DpnI	GATC	3 cut(s)	199, 813, 1005
DpnII	GATC	3 cut(s)	197, 811, 1003
DraI	TTTAAA	1 cut(s)	861
EaeI	YGGCCR	2 cut(s)	140, 366
Eam1104I	CTCTTC	3 cut(s)	4, 264, 1275
EarI	CTCTTC	3 cut(s)	4, 264, 1275
Eco105I	TACGTA	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	1148
Eco47III	AGCGCT	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	420, 543
EcoRI	GAATTC	2 cut(s)	1118, 1264
EcoRII	CCWGG	1 cut(s)	35
FaeI	CATG	5 cut(s)	353, 535, 652, 1023, 1318
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	5 cut(s)	349, 531, 648, 1019, 1314
FauNDI	CATATG	2 cut(s)	831, 1083
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	6 cut(s)	105, 338, 615, 744, 820, 1336
FokI	GGATG	2 cut(s)	543, 669
Fsp4HI	GCNGC	6 cut(s)	105, 338, 615, 744, 820, 1336
FspBI	CTAG	4 cut(s)	173, 282, 608, 891
GlaI	GCGC	1 cut(s)	756
GluI	GCNGC	6 cut(s)	105, 338, 615, 744, 820, 1336
GsuI	CTGGAG	2 cut(s)	19, 1295
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	3 cut(s)	142, 368, 761
HhaI	GCGC	1 cut(s)	757
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	5 cut(s)	353, 535, 652, 1023, 1318
Hin6I	GCGC	1 cut(s)	755
HinP1I	GCGC	1 cut(s)	755
HincII	GTYRAC	2 cut(s)	240, 580
HindII	GTYRAC	2 cut(s)	240, 580
HinfI	GANTC	5 cut(s)	434, 563, 663, 1033, 1071
HpaI	GTTAAC	1 cut(s)	240
HphI	GGTGA	2 cut(s)	122, 734
Hpy166II	GTNNAC	4 cut(s)	240, 406, 580, 886
Hpy188I	TCNGA	4 cut(s)	400, 433, 514, 1321
Hpy188III	TCNNGA	7 cut(s)	6, 266, 447, 560, 785, 1151, 1274
Hpy8I	GTNNAC	4 cut(s)	240, 406, 580, 886
Hpy99I	CGWCG	1 cut(s)	1314
HpyAV	CCTTC	6 cut(s)	36, 518, 793, 1081, 1225, 1273
HpyCH4III	ACNGT	2 cut(s)	722, 1186
HpyCH4IV	ACGT	3 cut(s)	73, 576, 1129
HpyCH4V	TGCA	5 cut(s)	246, 535, 617, 835, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 752
HpyF3I	CTNAG	4 cut(s)	432, 511, 665, 845
HpySE526I	ACGT	3 cut(s)	73, 576, 1129
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	5 cut(s)	353, 535, 652, 1023, 1318
HspAI	GCGC	1 cut(s)	755
KspAI	GTTAAC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	197, 811, 1003
LmnI	GCTCC	2 cut(s)	38, 527
Lsp1109I	GCAGC	6 cut(s)	91, 349, 601, 755, 831, 1322
LweI	GCATC	1 cut(s)	1315
MaeI	CTAG	4 cut(s)	173, 282, 608, 891
MaeII	ACGT	3 cut(s)	73, 576, 1129
MaeIII	GTNAC	2 cut(s)	69, 110
MalI	GATC	3 cut(s)	199, 813, 1005
MboI	GATC	3 cut(s)	197, 811, 1003
MboII	GAAGA	9 cut(s)	21, 140, 281, 315, 398, 629, 1063, 1217, 1262
MflI	RGATCY	2 cut(s)	197, 1003
MhlI	GDGCHC	1 cut(s)	720
MlsI	TGGCCA	1 cut(s)	368
MluNI	TGGCCA	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	443, 657
MmeI	TCCRAC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	8 cut(s)	239, 302, 461, 764, 860, 869, 986, 1295
Msp20I	TGGCCA	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	154, 752
NdeI	CATATG	2 cut(s)	831, 1083
NdeII	GATC	3 cut(s)	197, 811, 1003
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	5 cut(s)	353, 535, 652, 1023, 1318
NlaIV	GGNNCC	3 cut(s)	199, 451, 529
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	1318
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	563, 1033, 1071
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	6 cut(s)	106, 339, 616, 745, 821, 1337
PleI	GAGTC	2 cut(s)	442, 657
PpsI	GAGTC	2 cut(s)	442, 657
Ppu21I	YACGTR	2 cut(s)	74, 1130
PshBI	ATTAAT	1 cut(s)	1295
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	3 cut(s)	199, 451, 529
PspPI	GGNCC	1 cut(s)	1148
PsuI	RGATCY	2 cut(s)	197, 1003
RsaI	GTAC	2 cut(s)	99, 426
RsaNI	GTAC	2 cut(s)	98, 425
SaqAI	TTAA	8 cut(s)	239, 302, 461, 764, 860, 869, 986, 1295
SatI	GCNGC	6 cut(s)	105, 338, 615, 744, 820, 1336
Sau3AI	GATC	3 cut(s)	197, 811, 1003
Sau96I	GGNCC	1 cut(s)	1148
SchI	GAGTC	2 cut(s)	443, 657
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	720
SfaNI	GCATC	1 cut(s)	1315
SinI	GGWCC	1 cut(s)	1148
SnaBI	TACGTA	1 cut(s)	74
SspI	AATATT	3 cut(s)	768, 904, 922
SspMI	CTAG	4 cut(s)	173, 282, 608, 891
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	722, 1186
TaiI	ACGT	3 cut(s)	76, 579, 1132
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	2 cut(s)	97, 424
TfiI	GAWTC	3 cut(s)	563, 1033, 1071
Tru1I	TTAA	8 cut(s)	239, 302, 461, 764, 860, 869, 986, 1295
Tru9I	TTAA	8 cut(s)	239, 302, 461, 764, 860, 869, 986, 1295
TscAI	CASTG	4 cut(s)	222, 849, 1177, 1230
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	6 cut(s)	104, 337, 614, 743, 819, 1335
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	5 cut(s)	141, 541, 545, 1100, 1343
TspGWI	ACGGA	1 cut(s)	1178
TspRI	CASTG	4 cut(s)	222, 849, 1177, 1230
VpaK11BI	GGWCC	1 cut(s)	1148
VspI	ATTAAT	1 cut(s)	1295
XapI	RAATTY	6 cut(s)	274, 304, 1054, 1118, 1141, 1264
XceI	RCATGY	1 cut(s)	1318
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	4 cut(s)	173, 282, 608, 891
ZraI	GACGTC	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.