Rh6BG055500
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008115
Physical Location & Seq
Reverse (-)
8938012 .. 8941886
3875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG055500.1

Sequence Viewer

Length: 1197 bp
ATGAGTAGGCGTTGCGGGTTTTCGAACATGAGAGCAAAAGGTGGTCTTCATCCTCCAAATGCCATGAGGAAAAAAGGCAAACAAAAAGATGGAGGAAGAACTGTTGCTGATGAGTATGAGGATGAGTTACCGGAAAAACTGACTCAGGTTCCTCGTCCCTGCCCCTCGGGGCCAATTTCTACTTACTTAGTAGAAGGGTTATATGAGAAAAGGGGAGACAAGCGAGAGGAGACACTAGCCTTTATGATTGAAGGCTTAAATAGAAACCTAAGCAAAAACTTGCTGGAAGAGAAGTTTGCTACCTTTCTATACAGATGCTTGAACTCTGTGAAGAAAGGTTCTACCAAGGAGGTGAATAATTCATTTCATGTGATAGGCTTGCTGGCAACAATAGTTGGTTGTGAAGATAAACTCTCTGAAATATATAGAGAGTTGCTTCCTGTACTTTCCGGAGCTCTGAAATCTGGGTCCACAACAATAAAGATATTGGATTGCTTGGCTATTGTTGCTTTCTTTGGTGCAACCAATCCAGATGAAACAGAGAGTGCCATGCATATTATATGGGAGTACCTCAATCCCGAGTCGGGTTATGATGTCAACACAAAAAATAATTCAGCGGAGTTACTAGTTGCCGCAGTATATGCTTGGTTGTTTCTTCTTTCAAGCATGGAGGGATTTAGACTCAGCTACACCTACTGGAAAGGGGCCATTTCATACTTCGCAAATTTACTAGATCACGACAACAAATTAGTATGTGGAGCAGCTAGTGAAGCATTAGCTTTAATTTTTGAAACTGGCTCTCTTGAAAAGTTCTGGAATGAAGAAAATGGTTCAAGCCCCAGTTATTCACAAATGCAACAATCACTTGGAGCCCATCTTTTAAAGAAAGTTAAATGTGCTTACAAAAATCTACGAACTGAGAATAATGCAGACAAAATCCGCAATGTTGTAAGATATTTTGAGAGTTCTCATGTCCTGGCAGAATCTTTAGTGGTCAAAGGGAAAGTACTAACGTTGTCATCATGGTATCAAATAATTCAGCTGCAGTTTTTGAAGAGGTTTCTAGCTGATGGATTTAAAAAACATATGGAGGAAAATGAGAAGCTTCAGAATTTGTTCGAGTTCGATCCTCATAAAAGCAAGAATTTAGGTCCAGAGTTGTATGTGGCTACTACTGATAAGGTTGGTCATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

398

Amino Acids

44.83

Weight (kDa)

8.02

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 64 - 298 5.5e-43 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 449
AciI CCGC 4 cut(s) 15, 617, 633, 940
AclI AACGTT 1 cut(s) 1013
AclWI GGATC 1 cut(s) 1121
AcsI RAATTY 3 cut(s) 724, 1111, 1144
AcuI CTGAAG 1 cut(s) 1091
AfaI GTAC 3 cut(s) 444, 569, 1008
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 7 cut(s) 251, 322, 663, 791, 806, 834, 1054
AhlI ACTAGT 1 cut(s) 625
AjnI CCWGG 1 cut(s) 975
AluBI AGCT 7 cut(s) 455, 687, 764, 779, 1042, 1067, 1105
AluI AGCT 7 cut(s) 455, 687, 764, 779, 1042, 1067, 1105
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 2 cut(s) 210, 224
AlwI GGATC 1 cut(s) 1121
Ama87I CYCGRG 2 cut(s) 166, 578
Aor13HI TCCGGA 1 cut(s) 449
AoxI GGCC 2 cut(s) 170, 705
ApeKI GCWGC 2 cut(s) 761, 1042
ApoI RAATTY 3 cut(s) 724, 1111, 1144
Asp700I GAANNNNTTC 1 cut(s) 1115
AspS9I GGNCC 4 cut(s) 170, 468, 705, 1151
AsuHPI GGTGA 1 cut(s) 364
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 2 cut(s) 166, 578
AvaII GGWCC 2 cut(s) 468, 1151
BanII GRGCYC 2 cut(s) 457, 874
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 773, 1029
BccI CCATC 3 cut(s) 83, 882, 1064
BciT130I CCWGG 1 cut(s) 977
BcoDI GTCTC 2 cut(s) 210, 224
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 5 cut(s) 236, 626, 731, 765, 1064
BfmI CTRYAG 1 cut(s) 1043
BisI GCNGC 3 cut(s) 633, 762, 1043
BlsI GCNGC 3 cut(s) 634, 763, 1044
BmcAI AGTACT 1 cut(s) 1008
Bme1390I CCNGG 1 cut(s) 977
Bme18I GGWCC 2 cut(s) 468, 1151
BmeT110I CYCGRG 2 cut(s) 166, 578
BmgT120I GGNCC 4 cut(s) 170, 468, 705, 1151
BmiI GGNNCC 5 cut(s) 150, 171, 469, 706, 871
BmrFI CCNGG 1 cut(s) 977
BmrI ACTGGG 1 cut(s) 834
BmsI GCATC 1 cut(s) 305
BmuI ACTGGG 1 cut(s) 834
BpiI GAAGAC 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 269
Bpu14I TTCGAA 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 165, 345
BsaWI WCCGGW 2 cut(s) 130, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 701, 799, 840
Bse3DI GCAATG 1 cut(s) 949
BseAI TCCGGA 1 cut(s) 449
BseBI CCWGG 1 cut(s) 977
BseDI CCNNGG 2 cut(s) 165, 345
BseGI GGATG 2 cut(s) 49, 127
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 949
BseMII CTCAG 3 cut(s) 158, 697, 909
BseNI ACTGG 3 cut(s) 701, 799, 840
BseRI GAGGAG 1 cut(s) 242
BseXI GCAGC 2 cut(s) 773, 1029
BshFI GGCC 2 cut(s) 172, 707
BsiHKAI GWGCWC 1 cut(s) 457
BsiHKCI CYCGRG 2 cut(s) 166, 578
BsiSI CCGG 2 cut(s) 131, 450
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 2 cut(s) 210, 224
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 2 cut(s) 172, 707
BsoBI CYCGRG 2 cut(s) 166, 578
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 457, 874
Bsp13I TCCGGA 1 cut(s) 449
Bsp143I GATC 2 cut(s) 733, 1126
BspACI CCGC 4 cut(s) 15, 617, 633, 940
BspANI GGCC 2 cut(s) 172, 707
BspCNI CTCAG 3 cut(s) 157, 696, 910
BspEI TCCGGA 1 cut(s) 449
BspLI GGNNCC 5 cut(s) 150, 171, 469, 706, 871
BspMAI CTGCAG 1 cut(s) 1047
BspPI GGATC 1 cut(s) 1121
BspT104I TTCGAA 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 949
BsrI ACTGG 3 cut(s) 701, 799, 840
BssECI CCNNGG 2 cut(s) 165, 345
BssMI GATC 2 cut(s) 733, 1126
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 977
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 2 cut(s) 282, 1049
BstAPI GCANNNNNTGC 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 380, 384
BstDEI CTNAG 5 cut(s) 144, 187, 269, 683, 918
BstF5I GGATG 2 cut(s) 49, 127
BstKTI GATC 2 cut(s) 736, 1129
BstMAI GTCTC 2 cut(s) 210, 224
BstMBI GATC 2 cut(s) 733, 1126
BstMWI GCNNNNNNNGC 3 cut(s) 506, 641, 770
BstNI CCWGG 1 cut(s) 977
BstSCI CCNGG 1 cut(s) 975
BstSFI CTRYAG 1 cut(s) 1043
BstV1I GCAGC 2 cut(s) 773, 1029
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 2 cut(s) 172, 707
BtsCI GGATG 2 cut(s) 49, 127
Cac8I GCNNGC 2 cut(s) 380, 384
Cfr13I GGNCC 4 cut(s) 170, 468, 705, 1151
Csp6I GTAC 3 cut(s) 443, 568, 1007
CviAII CATG 7 cut(s) 28, 64, 368, 550, 667, 971, 1023
CviQI GTAC 3 cut(s) 443, 568, 1007
DdeI CTNAG 5 cut(s) 144, 187, 269, 683, 918
DpnI GATC 2 cut(s) 735, 1128
DpnII GATC 2 cut(s) 733, 1126
DraI TTTAAA 2 cut(s) 882, 1078
Eam1104I CTCTTC 2 cut(s) 282, 1049
EarI CTCTTC 2 cut(s) 282, 1049
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 457, 874
Eco47I GGWCC 2 cut(s) 468, 1151
Eco53kI GAGCTC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 1091
Eco88I CYCGRG 2 cut(s) 166, 578
EcoICRI GAGCTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 975
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 555
EcoT38I GRGCYC 2 cut(s) 457, 874
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 7 cut(s) 31, 67, 371, 553, 670, 974, 1026
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FaqI GGGAC 1 cut(s) 141
FatI CATG 7 cut(s) 27, 63, 367, 549, 666, 970, 1022
FauI CCCGC 1 cut(s) 8
FauNDI CATATG 1 cut(s) 1086
Fnu4HI GCNGC 3 cut(s) 633, 762, 1043
FokI GGATG 2 cut(s) 36, 134
FriOI GRGCYC 2 cut(s) 457, 874
Fsp4HI GCNGC 3 cut(s) 633, 762, 1043
FspBI CTAG 5 cut(s) 236, 626, 731, 765, 1064
GluI GCNGC 3 cut(s) 633, 762, 1043
HaeIII GGCC 2 cut(s) 172, 707
HapII CCGG 2 cut(s) 131, 450
Hin1II CATG 7 cut(s) 31, 67, 371, 553, 670, 974, 1026
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 4 cut(s) 142, 581, 681, 983
HpaII CCGG 2 cut(s) 131, 450
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 471, 598
Hpy188I TCNGA 3 cut(s) 418, 459, 1110
Hpy188III TCNNGA 7 cut(s) 450, 530, 578, 737, 803, 814, 1154
Hpy8I GTNNAC 2 cut(s) 471, 598
HpyAV CCTTC 2 cut(s) 188, 245
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 1013
HpyCH4V TGCA 5 cut(s) 521, 553, 856, 929, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 641, 770
HpyF3I CTNAG 5 cut(s) 144, 187, 269, 683, 918
HpySE526I ACGT 1 cut(s) 1013
Hsp92II CATG 7 cut(s) 31, 67, 371, 553, 670, 974, 1026
Kpn2I TCCGGA 1 cut(s) 449
Kzo9I GATC 2 cut(s) 733, 1126
LmnI GCTCC 3 cut(s) 452, 758, 869
Lsp1109I GCAGC 2 cut(s) 773, 1029
LweI GCATC 1 cut(s) 305
MaeI CTAG 5 cut(s) 236, 626, 731, 765, 1064
MaeII ACGT 1 cut(s) 1013
MaeIII GTNAC 2 cut(s) 126, 621
MalI GATC 2 cut(s) 735, 1128
MboI GATC 2 cut(s) 733, 1126
MboII GAAGA 8 cut(s) 38, 108, 299, 343, 416, 647, 833, 1066
MhlI GDGCHC 2 cut(s) 457, 874
MluCI AATT 9 cut(s) 174, 358, 610, 724, 746, 783, 1035, 1111, 1144
MlyI GAGTC 3 cut(s) 136, 590, 675
Mph1103I ATGCAT 1 cut(s) 555
MroI TCCGGA 1 cut(s) 449
MroXI GAANNNNTTC 1 cut(s) 1115
MseI TTAA 6 cut(s) 257, 782, 881, 891, 1077, 1195
MspA1I CMGCKG 2 cut(s) 617, 1042
MspI CCGG 2 cut(s) 131, 450
MspR9I CCNGG 1 cut(s) 977
MvaI CCWGG 1 cut(s) 977
MwoI GCNNNNNNNGC 3 cut(s) 506, 641, 770
NdeI CATATG 1 cut(s) 1086
NdeII GATC 2 cut(s) 733, 1126
NlaIII CATG 7 cut(s) 31, 67, 371, 553, 670, 974, 1026
NlaIV GGNNCC 5 cut(s) 150, 171, 469, 706, 871
NsiI ATGCAT 1 cut(s) 555
NspV TTCGAA 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 1 cut(s) 983
PkrI GCNGC 3 cut(s) 634, 763, 1044
PleI GAGTC 3 cut(s) 136, 589, 675
PpsI GAGTC 3 cut(s) 136, 589, 675
Psp124BI GAGCTC 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 1013
Psp6I CCWGG 1 cut(s) 975
PspGI CCWGG 1 cut(s) 975
PspN4I GGNNCC 5 cut(s) 150, 171, 469, 706, 871
PspPI GGNCC 4 cut(s) 170, 468, 705, 1151
PstI CTGCAG 1 cut(s) 1047
PvuII CAGCTG 1 cut(s) 1042
RsaI GTAC 3 cut(s) 444, 569, 1008
RsaNI GTAC 3 cut(s) 443, 568, 1007
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 6 cut(s) 257, 782, 881, 891, 1077, 1195
SatI GCNGC 3 cut(s) 633, 762, 1043
Sau3AI GATC 2 cut(s) 733, 1126
Sau96I GGNCC 4 cut(s) 170, 468, 705, 1151
ScaI AGTACT 1 cut(s) 1008
SchI GAGTC 3 cut(s) 136, 590, 675
ScrFI CCNGG 1 cut(s) 977
SduI GDGCHC 2 cut(s) 457, 874
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 1043
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 2 cut(s) 468, 1151
SpeI ACTAGT 1 cut(s) 625
Sse9I AATT 9 cut(s) 174, 358, 610, 724, 746, 783, 1035, 1111, 1144
SsiI CCGC 4 cut(s) 15, 617, 633, 940
SspMI CTAG 5 cut(s) 236, 626, 731, 765, 1064
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 975
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 1 cut(s) 1016
TaqI TCGA 3 cut(s) 23, 1119, 1125
TasI AATT 9 cut(s) 174, 358, 610, 724, 746, 783, 1035, 1111, 1144
TatI WGTACW 2 cut(s) 442, 1006
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 983
Tru1I TTAA 6 cut(s) 257, 782, 881, 891, 1077, 1195
Tru9I TTAA 6 cut(s) 257, 782, 881, 891, 1077, 1195
TseI GCWGC 2 cut(s) 761, 1042
TspDTI ATGAA 6 cut(s) 38, 351, 356, 549, 702, 834
VpaK11BI GGWCC 2 cut(s) 468, 1151
XapI RAATTY 3 cut(s) 724, 1111, 1144
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 5 cut(s) 236, 626, 731, 765, 1064
ZrmI AGTACT 1 cut(s) 1008
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.