Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Reverse (-)

4861879 .. 4863384

Gene Structure 1506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g05860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTCTCTCTGAGCTCAGCTTCCCTTCCATCCATGGCTGCCTCCTCCTCCACATTTCCTCTACGCTCCTCACGCGCCGTCTTCCTCTCCTCCTCCCACTCTCGCCTGAACCCCACGCCCACTCCCTCCCTCTCTTTCCCGCTCCGATTCCACCCCAAACTCTCCTCCGTCAAGCTCCCAAATCCCCCGCCTCGCTCCCTCAAGATCTTCTCCGTCCGCGAATCCAAAGCTCCGGCGGTTACCGGGGACTCGTGGGAGAAATCAGTTATTAACAGTGAGACTCCTGTGCTAGTCGAGTTTTATGCAAGCTGGTGCGGGCCGTGTAGGATGGTCCACCGCGTGATTGATGAAATTGCGGTTGAGTATGCCGGCAAGCTCAACTGCTTTGTGCTCAACGCGGATGTTGATTTGCAGATTGCCGAGGACTATGATATTAAGGCTGTACCGGTCGTTTTGTTGTTTAAGAATGGGAAGAAATGTGACACTGTGGTTGGCACCATGCCAAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTTCTGAAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

9.1

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	80 - 176	5e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	142
AccII	CGCG	4 cut(s)	75, 219, 339, 398
AciI	CCGC	8 cut(s)	140, 188, 217, 236, 315, 337, 356, 398
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	1 cut(s)	531
AgeI	ACCGGT	1 cut(s)	445
AluBI	AGCT	6 cut(s)	15, 20, 175, 230, 309, 376
AluI	AGCT	6 cut(s)	15, 20, 175, 230, 309, 376
Alw21I	GWGCWC	2 cut(s)	17, 393
Alw26I	GTCTC	1 cut(s)	272
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	2 cut(s)	38, 521
AsiGI	ACCGGT	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	317, 331
AsuC2I	CCSGG	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	17, 393
BbvI	GCAGC	2 cut(s)	25, 508
BccI	CCATC	2 cut(s)	37, 322
BceAI	ACGGC	2 cut(s)	62, 304
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	290
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	2 cut(s)	39, 522
BlpI	GCTNAGC	1 cut(s)	16
BlsI	GCNGC	2 cut(s)	40, 523
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	317, 331
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	33, 243, 420
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse118I	RCCGGY	2 cut(s)	368, 445
BseDI	CCNNGG	3 cut(s)	33, 243, 420
BseGI	GGATG	3 cut(s)	29, 333, 406
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	30
BseRI	GAGGAG	6 cut(s)	34, 37, 58, 79, 82, 154
BseXI	GCAGC	2 cut(s)	25, 508
Bsh1236I	CGCG	4 cut(s)	75, 219, 339, 398
Bsh1285I	CGRYCG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	494
BshTI	ACCGGT	1 cut(s)	445
BsiEI	CGRYCG	1 cut(s)	450
BsiHKAI	GWGCWC	2 cut(s)	17, 393
BsiSI	CCGG	4 cut(s)	233, 243, 369, 446
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	17, 393
Bsp143I	GATC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	16
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	8 cut(s)	140, 188, 217, 236, 315, 337, 356, 398
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	4 cut(s)	75, 219, 339, 398
BspLI	GGNNCC	1 cut(s)	496
BspT107I	GGYRCC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	142
BsrFI	RCCGGY	2 cut(s)	368, 445
BssAI	RCCGGY	2 cut(s)	368, 445
BssECI	CCNNGG	3 cut(s)	33, 243, 420
BssMI	GATC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	275, 487
BstC8I	GCNNGC	4 cut(s)	307, 317, 370, 374
BstDEI	CTNAG	2 cut(s)	11, 16
BstDSI	CCRYGG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	29, 333, 406
BstFNI	CGCG	4 cut(s)	75, 219, 339, 398
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	207
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	204
BstMCI	CGRYCG	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstPI	GGTNACC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	242
BstUI	CGCG	4 cut(s)	75, 219, 339, 398
BstV1I	GCAGC	2 cut(s)	25, 508
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	29, 333, 406
BtsIMutI	CAGTG	2 cut(s)	280, 483
Cac8I	GCNNGC	4 cut(s)	307, 317, 370, 374
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	2 cut(s)	368, 445
Cfr13I	GGNCC	2 cut(s)	317, 331
Csp6I	GTAC	1 cut(s)	443
CspAI	ACCGGT	1 cut(s)	445
CviAII	CATG	2 cut(s)	34, 499
CviJI	RGCY	9 cut(s)	15, 20, 38, 175, 230, 309, 319, 376, 440
CviKI_1	RGCY	9 cut(s)	15, 20, 38, 175, 230, 309, 319, 376, 440
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	2 cut(s)	11, 16
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraIII	CACNNNGTG	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	15
Eco91I	GGTNACC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	15
EcoO65I	GGTNACC	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	17
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 502
FaiI	YATR	7 cut(s)	35, 303, 366, 429, 500, 516, 547
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	33, 498
FauI	CCCGC	3 cut(s)	147, 195, 308
Fnu4HI	GCNGC	2 cut(s)	39, 522
FokI	GGATG	3 cut(s)	16, 340, 413
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	39, 522
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	39, 522
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	4 cut(s)	233, 243, 369, 446
HhaI	GCGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	37, 502
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	4 cut(s)	147, 221, 248, 280
HpaII	CCGG	4 cut(s)	233, 243, 369, 446
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	12, 146, 540
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	275, 487
HpyCH4V	TGCA	2 cut(s)	305, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	2 cut(s)	11, 16
Hsp92II	CATG	2 cut(s)	37, 502
HspAI	GCGC	1 cut(s)	75
KroI	GCCGGC	1 cut(s)	368
KroNI	GCCGGC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	5 cut(s)	71, 147, 180, 200, 235
LpnPI	CCDG	7 cut(s)	119, 246, 256, 295, 297, 382, 459
Lsp1109I	GCAGC	2 cut(s)	25, 508
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	2 cut(s)	238, 479
MalI	GATC	1 cut(s)	206
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	1 cut(s)	204
MboII	GAAGA	3 cut(s)	73, 199, 484
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	17, 393
MluCI	AATT	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	242, 274
MroNI	GCCGGC	1 cut(s)	368
MseI	TTAA	3 cut(s)	270, 435, 462
MspI	CCGG	4 cut(s)	233, 243, 369, 446
MspR9I	CCNGG	1 cut(s)	244
MvnI	CGCG	4 cut(s)	75, 219, 339, 398
MwoI	GCNNNNNNNGC	1 cut(s)	72
NaeI	GCCGGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	244
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	204
NgoMIV	GCCGGC	1 cut(s)	368
NlaIII	CATG	2 cut(s)	37, 502
NlaIV	GGNNCC	1 cut(s)	496
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	370
PfeI	GAWTC	2 cut(s)	147, 221
PinAI	ACCGGT	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	40, 523
PleI	GAGTC	2 cut(s)	242, 274
PpsI	GAGTC	2 cut(s)	242, 274
Psp124BI	GAGCTC	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	317, 331
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	270, 435, 462
SatI	GCNGC	2 cut(s)	39, 522
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	317, 331
SchI	GAGTC	2 cut(s)	242, 274
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	2 cut(s)	17, 393
SetI	ASST	6 cut(s)	17, 22, 177, 232, 311, 378
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	8 cut(s)	140, 188, 217, 236, 315, 337, 356, 398
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	2 cut(s)	275, 487
TaqI	TCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	147, 221
Tru1I	TTAA	3 cut(s)	270, 435, 462
Tru9I	TTAA	3 cut(s)	270, 435, 462
TscAI	CASTG	2 cut(s)	280, 490
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	2 cut(s)	38, 521
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	2 cut(s)	157, 202
TspRI	CASTG	2 cut(s)	280, 490
VpaK11BI	GGWCC	1 cut(s)	331
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.