Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Forward (+)

15110384 .. 15112089

Gene Structure 1706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTGCCTCCACATTCCACTGTTCAACTTCATTGCGCTCGCGTGCCCTACAGAATCCAATGCTCTCGCCTTTCCTCTCCCACTCTCACCTAAACCCTTCGCCGAATCTCTCATTTCCTTTCCGGTTGCAGCCCAAAAGGGGGCTTATTGGCCTTCCAAATGCTCCTCCTCGCAGCCTCACGATCTTTTCTCTGCGCGAATCCAAAGCTGCAGCGGTTACCGGAGACTCCTGGGAGAAATCAGTCATCAACAGTGAAACACCTGTCCTTGTTGAATTTTACGCAAGCTGGTGTGGGCCGTGTAGGATGGTGCACCGGGTGATTGATGAAATTGCGGTTGAATATGCTGGGAAGCTTAAATGCTTTGTGCTCAACACAGATGTTGATCTGCAGGTTGCTGAGGACAATGAAATTAAGGCTGTACCTGTAGTTTTGCTGTTTAAGAATGGGAAGAAATGTGACACTGTGGTTGGTACCATGCCCAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTCCTGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

176

Amino Acids

19.35

Weight (kDa)

8.85

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
Acc65I	GGTACC	1 cut(s)	473
AccB1I	GGYRCC	1 cut(s)	473
AccII	CGCG	2 cut(s)	43, 198
AciI	CCGC	2 cut(s)	215, 335
AcsI	RAATTY	1 cut(s)	275
AdeI	CACNNNGTG	1 cut(s)	319
AfaI	GTAC	2 cut(s)	423, 475
AfiI	CCNNNNNNNGG	3 cut(s)	140, 141, 510
AgsI	TTSAA	3 cut(s)	27, 275, 341
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	209, 288, 355
AluI	AGCT	3 cut(s)	209, 288, 355
Alw21I	GWGCWC	2 cut(s)	315, 372
Alw26I	GTCTC	1 cut(s)	219
Alw44I	GTGCAC	1 cut(s)	311
AoxI	GGCC	2 cut(s)	151, 296
ApaLI	GTGCAC	1 cut(s)	311
ApeKI	GCWGC	6 cut(s)	5, 130, 174, 209, 212, 500
ApoI	RAATTY	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	39, 198
AspS9I	GGNCC	2 cut(s)	296, 514
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	80, 331
AvaII	GGWCC	1 cut(s)	514
BaeGI	GKGCMC	2 cut(s)	49, 315
BanI	GGYRCC	1 cut(s)	473
Bbv12I	GWGCWC	2 cut(s)	315, 372
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	5 cut(s)	142, 186, 196, 224, 487
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	219
BfmI	CTRYAG	4 cut(s)	50, 210, 389, 426
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	6 cut(s)	6, 131, 175, 210, 213, 501
BlsI	GCNGC	6 cut(s)	7, 132, 176, 211, 214, 502
Bme1390I	CCNGG	2 cut(s)	232, 317
Bme18I	GGWCC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	296, 514
BmiI	GGNNCC	2 cut(s)	475, 515
BmrFI	CCNGG	2 cut(s)	232, 317
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	231, 483
BsaWI	WCCGGW	2 cut(s)	123, 221
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 141, 510
Bse3DI	GCAATG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	231, 483
BseGI	GGATG	1 cut(s)	312
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	140, 141, 510
BseMI	GCAATG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	156, 159
BseSI	GKGCMC	2 cut(s)	49, 315
BseXI	GCAGC	5 cut(s)	142, 186, 196, 224, 487
BseYI	CCCAGC	1 cut(s)	347
Bsh1236I	CGCG	2 cut(s)	43, 198
BshFI	GGCC	2 cut(s)	153, 298
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	2 cut(s)	315, 372
BsiSI	CCGG	3 cut(s)	124, 222, 316
BslI	CCNNNNNNNGG	3 cut(s)	140, 141, 510
BsmAI	GTCTC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	153, 298
Bsp1286I	GDGCHC	3 cut(s)	49, 315, 372
Bsp143I	GATC	2 cut(s)	183, 385
BspACI	CCGC	2 cut(s)	215, 335
BspANI	GGCC	2 cut(s)	153, 298
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	43, 198
BspLI	GGNNCC	2 cut(s)	475, 515
BspMAI	CTGCAG	2 cut(s)	214, 393
BspMI	ACCTGC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	231, 483
BssMI	GATC	2 cut(s)	183, 385
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	23, 254, 466
BstC8I	GCNNGC	3 cut(s)	41, 45, 286
BstDEI	CTNAG	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	2 cut(s)	43, 198
BstHHI	GCGC	2 cut(s)	39, 198
BstKTI	GATC	2 cut(s)	186, 388
BstMAI	GTCTC	1 cut(s)	219
BstMBI	GATC	2 cut(s)	183, 385
BstNI	CCWGG	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	2 cut(s)	230, 315
BstSFI	CTRYAG	4 cut(s)	50, 210, 389, 426
BstSLI	GKGCMC	2 cut(s)	49, 315
BstUI	CGCG	2 cut(s)	43, 198
BstV1I	GCAGC	5 cut(s)	142, 186, 196, 224, 487
BsuRI	GGCC	2 cut(s)	153, 298
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	19, 259, 462
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	41, 45, 286
CfoI	GCGC	2 cut(s)	39, 198
Cfr13I	GGNCC	2 cut(s)	296, 514
Csp6I	GTAC	2 cut(s)	422, 474
CviAII	CATG	1 cut(s)	478
CviQI	GTAC	2 cut(s)	422, 474
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	2 cut(s)	185, 387
DpnII	GATC	2 cut(s)	183, 385
DraIII	CACNNNGTG	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	514
Eco91I	GGTNACC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	514
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	1 cut(s)	481
FaiI	YATR	3 cut(s)	345, 479, 495
FatI	CATG	1 cut(s)	477
Fnu4HI	GCNGC	6 cut(s)	6, 131, 175, 210, 213, 501
FokI	GGATG	1 cut(s)	319
Fsp4HI	GCNGC	6 cut(s)	6, 131, 175, 210, 213, 501
GlaI	GCGC	2 cut(s)	38, 197
GluI	GCNGC	6 cut(s)	6, 131, 175, 210, 213, 501
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	153, 298
HapII	CCGG	3 cut(s)	124, 222, 316
HhaI	GCGC	2 cut(s)	39, 198
Hin1II	CATG	1 cut(s)	481
Hin6I	GCGC	2 cut(s)	37, 196
HinP1I	GCGC	2 cut(s)	37, 196
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	55, 106, 200, 227
HpaII	CCGG	3 cut(s)	124, 222, 316
HphI	GGTGA	2 cut(s)	80, 331
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	181, 517
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	108, 164
HpyCH4III	ACNGT	3 cut(s)	23, 254, 466
HpyCH4V	TGCA	4 cut(s)	130, 212, 313, 391
HpyF3I	CTNAG	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	481
HspAI	GCGC	2 cut(s)	37, 196
KpnI	GGTACC	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	183, 385
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	5 cut(s)	142, 186, 196, 224, 487
MaeIII	GTNAC	2 cut(s)	217, 458
MalI	GATC	2 cut(s)	185, 387
MboI	GATC	2 cut(s)	183, 385
MboII	GAAGA	1 cut(s)	463
MhlI	GDGCHC	3 cut(s)	49, 315, 372
MluCI	AATT	3 cut(s)	275, 330, 411
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	19, 86, 177, 180, 188, 394, 504
MseI	TTAA	3 cut(s)	357, 414, 441
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	3 cut(s)	124, 222, 316
MspR9I	CCNGG	2 cut(s)	232, 317
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	2 cut(s)	43, 198
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	183, 385
NlaIII	CATG	1 cut(s)	481
NlaIV	GGNNCC	2 cut(s)	475, 515
NmuCI	GTSAC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	55, 106, 200
PkrI	GCNGC	6 cut(s)	7, 132, 176, 211, 214, 502
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	230
PspEI	GGTNACC	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	475, 515
PspPI	GGNCC	2 cut(s)	296, 514
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	2 cut(s)	214, 393
RsaI	GTAC	2 cut(s)	423, 475
RsaNI	GTAC	2 cut(s)	422, 474
SaqAI	TTAA	3 cut(s)	357, 414, 441
SatI	GCNGC	6 cut(s)	6, 131, 175, 210, 213, 501
Sau3AI	GATC	2 cut(s)	183, 385
Sau96I	GGNCC	2 cut(s)	296, 514
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	232, 317
SduI	GDGCHC	3 cut(s)	49, 315, 372
SetI	ASST	7 cut(s)	93, 211, 265, 290, 357, 396, 427
SfcI	CTRYAG	4 cut(s)	50, 210, 389, 426
SinI	GGWCC	1 cut(s)	514
Sse9I	AATT	3 cut(s)	275, 330, 411
SsiI	CCGC	2 cut(s)	215, 335
StyD4I	CCNGG	2 cut(s)	230, 315
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	3 cut(s)	23, 254, 466
TasI	AATT	3 cut(s)	275, 330, 411
TfiI	GAWTC	3 cut(s)	55, 106, 200
Tru1I	TTAA	3 cut(s)	357, 414, 441
Tru9I	TTAA	3 cut(s)	357, 414, 441
TscAI	CASTG	3 cut(s)	26, 259, 469
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	6 cut(s)	5, 130, 174, 209, 212, 500
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	21, 342, 423
TspRI	CASTG	3 cut(s)	26, 259, 469
VneI	GTGCAC	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.