Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Forward (+)

17207584 .. 17209284

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1082500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCGCTTCCACGTTCCACTGCTCGACTCCATTACGCTCCCCCGCCATCCAAAACCCAATGCTCTCGCCTCTCCTCTCCCACTCTCCGCCAAATCTCTCATTCCCTTTCCGATTGCAGCAGCCCGAACGGGGGCTCATCGTCGGCCTTCCAAATGTTCCTCCTCGCAGCCTCAAGATCCTCTCCGTTCGCGAATCCAAAGCTCCGGCGGTTACTGGAGACTCATGGGATAAATCAGTCATCAACAGTGAGACCCCTGTCCTCGTTGAATTTTATGCGAGCTGGTGTGGGCCGTGTAGGATGGTGCACCAGGTGATTGATGAAATTGCGGCTGAATATGCTGGGGAGCTCAAGTGCTATGTGCTCAACACAGATGTTGATTTGCAGGTTGTTGAGGACTATGAAATTAAGGCTGTGCCTGTAGTTTTGCTGTTCAAGAATGGGAAGAAATGTGACTCTGTGGTTGGTACCATGCCGAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTTCTGAAGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

6.29

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	71 - 167	8.4e-24	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccII	CGCG	1 cut(s)	192
AciI	CCGC	5 cut(s)	6, 45, 89, 209, 329
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	313
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	3 cut(s)	131, 132, 504
AgsI	TTSAA	2 cut(s)	269, 436
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	203, 282, 349
AluI	AGCT	3 cut(s)	203, 282, 349
Alw21I	GWGCWC	3 cut(s)	309, 351, 366
Alw26I	GTCTC	2 cut(s)	213, 245
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	3, 145, 290
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	118, 121, 168, 494
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	482
Asp718I	GGTACC	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	325
BaeGI	GKGCMC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	2 cut(s)	138, 351
Bbv12I	GWGCWC	3 cut(s)	309, 351, 366
BbvI	GCAGC	4 cut(s)	130, 133, 180, 481
BccI	CCATC	2 cut(s)	56, 295
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	213, 245
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	6 cut(s)	6, 119, 122, 169, 330, 495
BlsI	GCNGC	6 cut(s)	7, 120, 123, 170, 331, 496
Bme1390I	CCNGG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	311
BoxI	GACNNNNGTC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	158, 335
BsaI	GGTCTC	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 132, 504
Bse1I	ACTGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	48, 306
BseLI	CCNNNNNNNGG	3 cut(s)	131, 132, 504
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	65, 153
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	4 cut(s)	130, 133, 180, 481
BseYI	CCCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	5, 147, 292
BshNI	GGYRCC	1 cut(s)	467
BsiHKAI	GWGCWC	3 cut(s)	309, 351, 366
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	131, 132, 504
BsmAI	GTCTC	2 cut(s)	213, 245
BsnI	GGCC	3 cut(s)	5, 147, 292
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	4 cut(s)	138, 309, 351, 366
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	5 cut(s)	6, 45, 89, 209, 329
BspANI	GGCC	3 cut(s)	5, 147, 292
BspFNI	CGCG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	469
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	245
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	48, 306
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	213, 245
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	311
BstPAI	GACNNNNGTC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	4 cut(s)	130, 133, 180, 481
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	5, 147, 292
BtsCI	GGATG	2 cut(s)	48, 306
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 253
BtuMI	TCGCGA	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	290
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	2 cut(s)	225, 472
CviQI	GTAC	1 cut(s)	468
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
DraIII	CACNNNGTG	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	2 cut(s)	138, 351
Eco31I	GGTCTC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	138, 351
FaeI	CATG	2 cut(s)	228, 475
FaiI	YATR	7 cut(s)	226, 276, 339, 360, 402, 473, 489
FatI	CATG	2 cut(s)	224, 471
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	6 cut(s)	6, 119, 122, 169, 330, 495
FokI	GGATG	2 cut(s)	35, 313
FriOI	GRGCYC	2 cut(s)	138, 351
Fsp4HI	GCNGC	6 cut(s)	6, 119, 122, 169, 330, 495
GluI	GCNGC	6 cut(s)	6, 119, 122, 169, 330, 495
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	5, 147, 292
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	2 cut(s)	228, 475
HinfI	GANTC	4 cut(s)	28, 194, 221, 455
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	113, 513
Hpy188III	TCNNGA	3 cut(s)	175, 191, 436
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	2 cut(s)	158, 472
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	118, 307, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	228, 475
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	44, 208, 346
LpnPI	CCDG	9 cut(s)	201, 219, 268, 270, 296, 323, 327, 371, 432
Lsp1109I	GCAGC	4 cut(s)	130, 133, 180, 481
MabI	ACCWGGT	1 cut(s)	309
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	211, 452
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	457
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	4 cut(s)	138, 309, 351, 366
MluCI	AATT	3 cut(s)	269, 324, 405
MlyI	GAGTC	3 cut(s)	22, 215, 449
MnlI	CCTC	9 cut(s)	81, 86, 171, 174, 182, 191, 272, 388, 498
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	1 cut(s)	408
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	228, 475
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	452
NruI	TCGCGA	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	6 cut(s)	7, 120, 123, 170, 331, 496
PleI	GAGTC	3 cut(s)	22, 215, 449
PpsI	GAGTC	3 cut(s)	22, 215, 449
PshAI	GACNNNNGTC	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	6 cut(s)	6, 119, 122, 169, 330, 495
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	3 cut(s)	22, 215, 449
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	4 cut(s)	138, 309, 351, 366
SetI	ASST	6 cut(s)	17, 205, 284, 315, 351, 390
SexAI	ACCWGGT	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	173, 350
SmoI	CTYRAG	2 cut(s)	173, 350
Sse9I	AATT	3 cut(s)	269, 324, 405
SsiI	CCGC	5 cut(s)	6, 45, 89, 209, 329
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	269, 324, 405
TauI	GCSGC	2 cut(s)	8, 332
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	26, 253
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	4 cut(s)	118, 121, 168, 494
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	336, 417
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	2 cut(s)	26, 253
VneI	GTGCAC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.