Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Reverse (-)

76202225 .. 76203711

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0568800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGCTCAGTTCCGAGGTCACAAGGCCTCCCATTCCAGATCTTCTCCTTCTGGACTTGGTTATGACGTGTTCCTCAGCTTCAGAGGTGAAGACACCGGAAATAACTTCACTGATCACCTTCACACGGCCCTTCTCAACTCCCAATTTCAAACTTTTCGGGATGACCCTGAACTCAAAAGAGGGGAGAATATCAAGGAAGAGCTTGAGAAAGCCATTCCAGAGTCGCGAAGTTCTGTGATTGTGTTTTCGAGAAATTACACCTCTTCCCCATGGTGTCTGCACGAGCTTGTCATGATCAGTGAACGCAAGAGGACCTCCGATCATGTCGTGTTACCGGTGTTCTACGACGTTAATCCATCTCAACTGAGGATGCAGGCAGAAACTCTTTCAAAGGTTCCTAAATACCAAGAAAATCAATGGTCGGAGAAGTTGAATGGATGGCGGGCAGCACTTCGAGAAGTTGCAGATCTATCAGGAATGGTTTTAGAAAATGAAGCCGACGGGCACGAGTCAAAGTTCATCCAAAAGATTGTTAGAGTGATTCAAGAAAAGCTAGATCGAGTGGTTGATTCTCTCTCTGCAACTGCAGGTCACAACTCCTCATTGCTCTCTCCTTCTGGTGATTTTGCCTTTGGATTTCGCCAACTTGAAAACAGTGAGTATTTCTTGCTTTCTATATGGTTTGCCAAGATACCAGACAGAACCATTGTTTGGTACGCAAATGGAGATAGGCCTGCACCTAAGGGATCAATTGTGAACTTGACTTCCAGCAGTGGATTAGTGCTTACAACTCCTCAGGGTGAACAGCTATGGAGATCTGAACTAACCATTGCTGGTGTTGTTGCTCATGGGTTTATGAATGATAAGGGTAACTTTGTTCTGGAAGATGAGAAGTCAGAAAAGTTATGGGAGACATTCAAGAATCCTACTGATACCATGTTGCCTGGGCAGATAATAGAAAGAGGAGGGAGACTTTCTTCTCGACAATCAGAGACTAACTATGCAAGAGGACGCTTCCAGATAGATTTTCAAGAAGATGGGAATCTTGTGTTTAGTGCCAAAAAACCTTTTCATTCTACTGCAACTACAACGGGGACTGTTCCAGGTAGTGAAGGTAAACAGTTGGTTTTCAATGACTCCGGCAACTTCTATATTCTGCGAGTGAATGGTGGAAGATTCACTTTCACAGCAGAGGAACGCCTAGCAAGGGACTACTATCTCCGGTCAACTCTCAACTTTGATGGGGTTTTGGCTCAATATTTTCTCCCAAAGTCTTTTGTTGACACTGTAAGCTGGAAACCTCTTTGGTCAGAACCAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

441

Amino Acids

49.91

Weight (kDa)

5.99

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	21 - 191	5.2e-41	TIR domain
TIR_2	PF13676	23 - 120	1.3e-15	TIR domain
B_lectin	PF01453	235 - 320	1.2e-13	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	711
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	442
AclWI	GGATC	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	64
AfaI	GTAC	1 cut(s)	716
AfiI	CCNNNNNNNGG	3 cut(s)	124, 711, 1207
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	334
AgsI	TTSAA	8 cut(s)	149, 390, 433, 545, 650, 919, 1031, 1132
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	943, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AloI	GAACNNNNNNTCC	2 cut(s)	749, 781
AluBI	AGCT	6 cut(s)	78, 202, 286, 553, 808, 1293
AluI	AGCT	6 cut(s)	78, 202, 286, 553, 808, 1293
Alw26I	GTCTC	3 cut(s)	905, 964, 986
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	3 cut(s)	24, 126, 731
ApeKI	GCWGC	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	334
AspS9I	GGNCC	2 cut(s)	127, 312
AsuHPI	GGTGA	4 cut(s)	98, 107, 632, 812
AvaII	GGWCC	1 cut(s)	312
AxyI	CCTNAGG	2 cut(s)	741, 795
BaeGI	GKGCMC	1 cut(s)	507
BauI	CACGAG	2 cut(s)	281, 506
BbsI	GAAGAC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	4 cut(s)	364, 432, 1031, 1235
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	945, 1104
BclI	TGATCA	2 cut(s)	112, 294
BcoDI	GTCTC	3 cut(s)	905, 964, 986
BfaI	CTAG	2 cut(s)	554, 1202
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	578
BglII	AGATCT	3 cut(s)	38, 466, 815
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	945, 1104
Bme18I	GGWCC	1 cut(s)	312
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	127, 312
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	945, 1104
BmsI	GCATC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaJI	CCNNGG	3 cut(s)	13, 269, 944
BsaWI	WCCGGW	3 cut(s)	95, 334, 1221
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 711, 1207
Bse118I	RCCGGY	1 cut(s)	334
Bse21I	CCTNAGG	2 cut(s)	741, 795
Bse3DI	GCAATG	2 cut(s)	602, 828
Bse8I	GATNNNNATC	1 cut(s)	1041
BseBI	CCWGG	2 cut(s)	945, 1104
BseDI	CCNNGG	3 cut(s)	13, 269, 944
BseGI	GGATG	4 cut(s)	166, 375, 443, 519
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	3 cut(s)	124, 711, 1207
BseMI	GCAATG	2 cut(s)	602, 828
BseMII	CTCAG	4 cut(s)	20, 88, 356, 809
BseRI	GAGGAG	3 cut(s)	589, 783, 978
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	458
BsgI	GTGCAG	2 cut(s)	263, 720
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	26, 128, 733
BshTI	ACCGGT	1 cut(s)	334
BsiSI	CCGG	4 cut(s)	96, 335, 1140, 1222
BslFI	GGGAC	2 cut(s)	1108, 1223
BslI	CCNNNNNNNGG	3 cut(s)	124, 711, 1207
BsmAI	GTCTC	3 cut(s)	905, 964, 986
BsmFI	GGGAC	2 cut(s)	1108, 1223
BsnI	GGCC	3 cut(s)	26, 128, 733
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
Bsp19I	CCATGG	1 cut(s)	269
Bsp68I	TCGCGA	1 cut(s)	226
BspACI	CCGC	1 cut(s)	442
BspANI	GGCC	3 cut(s)	26, 128, 733
BspCNI	CTCAG	4 cut(s)	19, 87, 357, 808
BspFNI	CGCG	1 cut(s)	226
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	1 cut(s)	192
BsrDI	GCAATG	2 cut(s)	602, 828
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	13, 269, 944
BssMI	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
BssSI	CACGAG	2 cut(s)	281, 506
BssT1I	CCWWGG	1 cut(s)	269
Bst2BI	CACGAG	2 cut(s)	281, 506
Bst2UI	CCWGG	2 cut(s)	945, 1104
Bst4CI	ACNGT	4 cut(s)	656, 1099, 1122, 1288
Bst6I	CTCTTC	2 cut(s)	192, 268
BstC8I	GCNNGC	3 cut(s)	375, 444, 735
BstDEI	CTNAG	5 cut(s)	6, 74, 365, 741, 795
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	4 cut(s)	166, 375, 443, 519
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	8 cut(s)	41, 115, 297, 322, 469, 559, 749, 818
BstMAI	GTCTC	3 cut(s)	905, 964, 986
BstMBI	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
BstNI	CCWGG	2 cut(s)	945, 1104
BstSCI	CCNGG	2 cut(s)	943, 1102
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	507
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	3 cut(s)	38, 466, 815
BstYI	RGATCY	3 cut(s)	38, 466, 815
Bsu36I	CCTNAGG	2 cut(s)	741, 795
BsuRI	GGCC	3 cut(s)	26, 128, 733
BtgI	CCRYGG	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	166, 375, 443, 519
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	5 cut(s)	108, 304, 661, 778, 1284
BtuMI	TCGCGA	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	3 cut(s)	375, 444, 735
CciI	TCATGA	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	127, 312
CseI	GACGC	1 cut(s)	1020
Csp6I	GTAC	1 cut(s)	715
CspAI	ACCGGT	1 cut(s)	334
CviAII	CATG	5 cut(s)	270, 292, 323, 848, 937
CviQI	GTAC	1 cut(s)	715
DdeI	CTNAG	5 cut(s)	6, 74, 365, 741, 795
DpnI	GATC	8 cut(s)	40, 114, 296, 321, 468, 558, 748, 817
DpnII	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
Eam1104I	CTCTTC	2 cut(s)	192, 268
EarI	CTCTTC	2 cut(s)	192, 268
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	2 cut(s)	26, 733
Eco47I	GGWCC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	64
Eco81I	CCTNAGG	2 cut(s)	741, 795
EcoO109I	RGGNCCY	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	943, 1102
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	5 cut(s)	273, 295, 326, 851, 940
FalI	AAGNNNNNCTT	4 cut(s)	857, 889, 1165, 1197
FaqI	GGGAC	2 cut(s)	1108, 1223
FatI	CATG	5 cut(s)	269, 291, 322, 847, 936
FauI	CCCGC	1 cut(s)	435
FbaI	TGATCA	2 cut(s)	112, 294
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	4 cut(s)	173, 382, 450, 506
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	2 cut(s)	554, 1202
GluI	GCNGC	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	26, 128, 733
HapII	CCGG	4 cut(s)	96, 335, 1140, 1222
HgaI	GACGC	1 cut(s)	1020
Hin1II	CATG	5 cut(s)	273, 295, 326, 851, 940
HincII	GTYRAC	2 cut(s)	1227, 1282
HindII	GTYRAC	2 cut(s)	1227, 1282
HinfI	GANTC	8 cut(s)	221, 509, 541, 569, 922, 1042, 1136, 1176
HpaII	CCGG	4 cut(s)	96, 335, 1140, 1222
HphI	GGTGA	4 cut(s)	98, 107, 632, 812
Hpy166II	GTNNAC	6 cut(s)	302, 757, 803, 1118, 1227, 1282
Hpy188I	TCNGA	8 cut(s)	14, 83, 319, 424, 820, 898, 991, 1312
Hpy8I	GTNNAC	6 cut(s)	302, 757, 803, 1118, 1227, 1282
Hpy99I	CGWCG	2 cut(s)	350, 503
HpyAV	CCTTC	5 cut(s)	57, 128, 140, 624, 1106
HpyCH4III	ACNGT	4 cut(s)	656, 1099, 1122, 1288
HpyCH4IV	ACGT	2 cut(s)	66, 348
HpyCH4V	TGCA	8 cut(s)	280, 373, 464, 581, 587, 737, 1004, 1082
HpyF3I	CTNAG	5 cut(s)	6, 74, 365, 741, 795
HpySE526I	ACGT	2 cut(s)	66, 348
Hsp92II	CATG	5 cut(s)	273, 295, 326, 851, 940
Ksp22I	TGATCA	2 cut(s)	112, 294
Kzo9I	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
LguI	GCTCTTC	1 cut(s)	192
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	554, 1202
MaeII	ACGT	2 cut(s)	66, 348
MaeIII	GTNAC	4 cut(s)	17, 330, 590, 869
MalI	GATC	8 cut(s)	40, 114, 296, 321, 468, 558, 748, 817
MboI	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
MboII	GAAGA	8 cut(s)	33, 101, 209, 255, 896, 969, 1046, 1185
MfeI	CAATTG	1 cut(s)	750
MflI	RGATCY	3 cut(s)	38, 466, 815
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	143, 253, 750, 1321
MlyI	GAGTC	3 cut(s)	230, 518, 1130
MmeI	TCCRAC	1 cut(s)	402
MseI	TTAA	2 cut(s)	351, 1324
MspI	CCGG	4 cut(s)	96, 335, 1140, 1222
MspR9I	CCNGG	2 cut(s)	945, 1104
MunI	CAATTG	1 cut(s)	750
MvaI	CCWGG	2 cut(s)	945, 1104
MvnI	CGCG	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
NlaIII	CATG	5 cut(s)	273, 295, 326, 851, 940
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	2 cut(s)	17, 590
NruI	TCGCGA	1 cut(s)	226
PagI	TCATGA	1 cut(s)	291
PceI	AGGCCT	2 cut(s)	26, 733
PciSI	GCTCTTC	1 cut(s)	192
PfeI	GAWTC	5 cut(s)	541, 569, 922, 1042, 1176
PflMI	CCANNNNNTGG	1 cut(s)	711
PinAI	ACCGGT	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	3 cut(s)	229, 517, 1130
PpsI	GAGTC	3 cut(s)	229, 517, 1130
PpuMI	RGGWCCY	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	312
Psp6I	CCWGG	2 cut(s)	943, 1102
PspGI	CCWGG	2 cut(s)	943, 1102
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	127, 312
PspPPI	RGGWCCY	1 cut(s)	312
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	3 cut(s)	38, 466, 815
RruI	TCGCGA	1 cut(s)	226
RsaI	GTAC	1 cut(s)	716
RsaNI	GTAC	1 cut(s)	715
SapI	GCTCTTC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	351, 1324
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	8 cut(s)	38, 112, 294, 319, 466, 556, 746, 815
Sau96I	GGNCC	2 cut(s)	127, 312
SchI	GAGTC	3 cut(s)	230, 518, 1130
ScrFI	CCNGG	2 cut(s)	945, 1104
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	4 cut(s)	143, 253, 750, 1321
SseBI	AGGCCT	2 cut(s)	26, 733
SsiI	CCGC	1 cut(s)	442
SspI	AATATT	1 cut(s)	1259
SspMI	CTAG	2 cut(s)	554, 1202
StuI	AGGCCT	2 cut(s)	26, 733
StyD4I	CCNGG	2 cut(s)	943, 1102
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	656, 1099, 1122, 1288
TaiI	ACGT	2 cut(s)	69, 351
TaqI	TCGA	4 cut(s)	248, 454, 559, 982
TasI	AATT	4 cut(s)	143, 253, 750, 1321
TfiI	GAWTC	5 cut(s)	541, 569, 922, 1042, 1176
Tru1I	TTAA	2 cut(s)	351, 1324
Tru9I	TTAA	2 cut(s)	351, 1324
TscAI	CASTG	5 cut(s)	115, 304, 661, 778, 1291
TseFI	GTSAC	2 cut(s)	17, 590
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	17, 590
TspDTI	ATGAA	4 cut(s)	507, 508, 872, 1061
TspRI	CASTG	5 cut(s)	115, 304, 661, 778, 1291
Van91I	CCANNNNNTGG	1 cut(s)	711
VpaK11BI	GGWCC	1 cut(s)	312
XspI	CTAG	2 cut(s)	554, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.