Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011493

Physical Location & Seq

Genomic Coordinates Reverse (-)

7691124 .. 7692463

Gene Structure 1340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG071800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCCGCCTCCTCCACATTTCCTTTACGCTCCTCACGCGCCGCCCTCCAAAACCCAATCTTCCTTCACTCTCGCCTAAACCCTACTACGCCCACTCCCGTCCTCTCTTTCCCGCTCCGATTGCGCCACACCAAATGGTCCGTTAAGCTTCCACATGCCCCTCCTCGCACCTTCAAGATCTTCTCCGTCCGCGAATCCAAAGCTCCGCCGGTTACCACAGACTCGTGGGAGAAATCAGTTATTAACAGTGAAACTCCTGTCCTAGTCGAATTTTATGCAAGCTGGTGTGGGCCGTGTAGGATGGTCCACCGCGTCATTGATGAAATTGCGGTTGAGTACGCTGGCAAGCTCAAGTGCTTTGTGCTCAACGCGGATGTTGATTTGCAGATTGCTGAGGACTATGATATTAAGGCTATACCTGTGGTTTTGCTGTTTAAGAATGGGAAGAAATGTGACACTGTGGTTGGTACCATGCCAAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTCCTGAATCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0010496 GO:0010497 GO:0010646 GO:0010647 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0048509 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko04621 ko05418 map04621 map05418

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

173

Amino Acids

19.44

Weight (kDa)

9.25

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	71 - 167	1e-23	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15570 AT2G15570
fragaria_vesca	FvH4_2g05860
malus_domestica	MD05G1082500.v1.1
prunus_persica	Prupe.8G126900_v2.0.a1
pyrus_communis	pycom05g07730
rosa_chinensis	RchiOBHm_Chr6g0257721
rosa_laevigata	RLG00000014718
rosa_multiflora	Rmu_co8430713.1_g000001 Rmu_sc0002079.1_g000028 Rmu_sc0006683.1_g000008 Rmu_sc0011315.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208900
rosa_rugosa	Rorug05G0568800
rosa_samantha	Rh1DG167100 Rh6AG085600 Rh6BG079900 Rh6CG074900 Rh6DG071800
rosa_wichuraiana	Rw6G007680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	115
AccII	CGCG	4 cut(s)	39, 192, 312, 371
AciI	CCGC	8 cut(s)	6, 42, 113, 190, 206, 310, 329, 371
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	2 cut(s)	338, 469
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	1 cut(s)	175
AluBI	AGCT	4 cut(s)	148, 203, 282, 349
AluI	AGCT	4 cut(s)	148, 203, 282, 349
Alw21I	GWGCWC	1 cut(s)	366
AoxI	GGCC	2 cut(s)	3, 290
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	41, 126
AspS9I	GGNCC	4 cut(s)	138, 290, 304, 508
AvaII	GGWCC	3 cut(s)	138, 304, 508
BanI	GGYRCC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	366
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BfaI	CTAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	3 cut(s)	6, 42, 495
BlsI	GCNGC	3 cut(s)	7, 43, 496
Bme18I	GGWCC	3 cut(s)	138, 304, 508
BmgT120I	GGNCC	4 cut(s)	138, 290, 304, 508
BmiI	GGNNCC	2 cut(s)	469, 509
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse118I	RCCGGY	1 cut(s)	208
BseGI	GGATG	2 cut(s)	306, 379
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	2 cut(s)	22, 153
BseXI	GCAGC	1 cut(s)	481
Bsh1236I	CGCG	4 cut(s)	39, 192, 312, 371
BshFI	GGCC	2 cut(s)	5, 292
BshNI	GGYRCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	504
BsnI	GGCC	2 cut(s)	5, 292
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	8 cut(s)	6, 42, 113, 190, 206, 310, 329, 371
BspANI	GGCC	2 cut(s)	5, 292
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	4 cut(s)	39, 192, 312, 371
BspLI	GGNNCC	2 cut(s)	469, 509
BspT107I	GGYRCC	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	223
Bst2BI	CACGAG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	248, 460
BstC8I	GCNNGC	3 cut(s)	280, 343, 347
BstDEI	CTNAG	1 cut(s)	393
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	306, 379
BstFNI	CGCG	4 cut(s)	39, 192, 312, 371
BstHHI	GCGC	2 cut(s)	41, 126
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	36, 121
BstNSI	RCATGY	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	211
BstUI	CGCG	4 cut(s)	39, 192, 312, 371
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	5, 292
BtsCI	GGATG	2 cut(s)	306, 379
BtsIMutI	CAGTG	2 cut(s)	253, 456
Cac8I	GCNNGC	3 cut(s)	280, 343, 347
CfoI	GCGC	2 cut(s)	41, 126
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	4 cut(s)	138, 290, 304, 508
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	337, 468
CviAII	CATG	2 cut(s)	155, 472
CviJI	RGCY	7 cut(s)	5, 148, 203, 282, 292, 349, 413
CviKI_1	RGCY	7 cut(s)	5, 148, 203, 282, 292, 349, 413
CviQI	GTAC	2 cut(s)	337, 468
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	138, 304, 508
Eco91I	GGTNACC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	508
EcoO65I	GGTNACC	1 cut(s)	211
FaeI	CATG	2 cut(s)	158, 475
FaiI	YATR	6 cut(s)	156, 276, 402, 416, 473, 489
FatI	CATG	2 cut(s)	154, 471
FauI	CCCGC	1 cut(s)	120
Fnu4HI	GCNGC	3 cut(s)	6, 42, 495
FokI	GGATG	2 cut(s)	313, 386
Fsp4HI	GCNGC	3 cut(s)	6, 42, 495
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	2 cut(s)	40, 125
GluI	GCNGC	3 cut(s)	6, 42, 495
HaeIII	GGCC	2 cut(s)	5, 292
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	41, 126
Hin1II	CATG	2 cut(s)	158, 475
Hin6I	GCGC	2 cut(s)	39, 124
HinP1I	GCGC	2 cut(s)	39, 124
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	194, 221, 514
HpaII	CCGG	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	2 cut(s)	175, 511
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	74, 181
HpyCH4III	ACNGT	2 cut(s)	248, 460
HpyCH4V	TGCA	2 cut(s)	278, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	36, 121
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	158, 475
HspAI	GCGC	2 cut(s)	39, 124
KpnI	GGTACC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	35, 120, 208
LpnPI	CCDG	5 cut(s)	222, 268, 270, 327, 432
Lsp1109I	GCAGC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	211, 452
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	52, 172, 457
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	2 cut(s)	269, 324
MlyI	GAGTC	1 cut(s)	215
MnlI	CCTC	9 cut(s)	19, 22, 43, 56, 113, 171, 174, 388, 498
MseI	TTAA	4 cut(s)	144, 243, 408, 435
MspI	CCGG	1 cut(s)	209
MvnI	CGCG	4 cut(s)	39, 192, 312, 371
MwoI	GCNNNNNNNGC	2 cut(s)	36, 121
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	2 cut(s)	158, 475
NlaIV	GGNNCC	2 cut(s)	469, 509
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	194, 514
PkrI	GCNGC	3 cut(s)	7, 43, 496
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	508
Psp5II	RGGWCCY	1 cut(s)	508
PspEI	GGTNACC	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	469, 509
PspPI	GGNCC	4 cut(s)	138, 290, 304, 508
PspPPI	RGGWCCY	1 cut(s)	508
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	338, 469
RsaNI	GTAC	2 cut(s)	337, 468
SaqAI	TTAA	4 cut(s)	144, 243, 408, 435
SatI	GCNGC	3 cut(s)	6, 42, 495
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	4 cut(s)	138, 290, 304, 508
SchI	GAGTC	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	366
SetI	ASST	6 cut(s)	150, 173, 205, 284, 351, 421
SinI	GGWCC	3 cut(s)	138, 304, 508
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	269, 324
SsiI	CCGC	8 cut(s)	6, 42, 113, 190, 206, 310, 329, 371
SspMI	CTAG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	248, 460
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	269, 324
TauI	GCSGC	2 cut(s)	8, 44
TfiI	GAWTC	2 cut(s)	194, 514
Tru1I	TTAA	4 cut(s)	144, 243, 408, 435
Tru9I	TTAA	4 cut(s)	144, 243, 408, 435
TscAI	CASTG	2 cut(s)	253, 463
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	3 cut(s)	130, 175, 507
TspRI	CASTG	2 cut(s)	253, 463
VpaK11BI	GGWCC	3 cut(s)	138, 304, 508
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.