FvH4_2g06110

Belongs to the CGI121 TPRKB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007405
Physical Location & Seq
Reverse (-)
5080178 .. 5085246
5069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06110.t4

Sequence Viewer

Length: 522 bp
ATGAAGCTGTTTGAGGTCAATGGAAACACACTCTCTCTTGCTCTCTTCATTGAAGTCACCAATTCCAAGGAACTGCTTGACTCGATGCAAGCTGCGACACTAGATCCAGAAGTGGCATTTCTGAATGCTTCACTTATCCCAGATGTTTTCCCTTTGCTTGCAGCTGCACATAAGACACTCATATCCAAGTCCCGAGACTCACTGACAACACGCACTCTTCATTCTGAGCTTGTTTACAACTACTCAGGATCCAAGCATATCACAGAATCCTTGAAAAGATGTGGTATCTCCGAAAGTTCAACTTATGTGCTTGCCGCTCGTTTCAATGCTACTTCTGATGAGATAGAACAGAAAGCAGTAGAGAAACTTGTCAATGGAAAAGAGATTAATTTGGAGGAGCTGGGAGGGAGAGCAGACCAAGCCCAGATACAGAAGCATTATAAGGTAACTAGCCAGGAGTTAGGGATGTCCTCACTTGCTGATGCTATTACATGCCGGATTGCTGCGCGTGACGCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CGI-121

Protein Analysis

174

Amino Acids

18.92

Weight (kDa)

5.59

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CGI-121 PF08617 66 - 221 3.2e-44 Kinase binding protein CGI-121
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 317
AccII CGCG 1 cut(s) 508
AciI CCGC 1 cut(s) 315
AclWI GGATC 3 cut(s) 98, 243, 256
AcyI GRCGYC 1 cut(s) 513
AgsI TTSAA 4 cut(s) 53, 274, 300, 325
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 5 cut(s) 7, 92, 164, 229, 400
AluI AGCT 5 cut(s) 7, 92, 164, 229, 400
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 3 cut(s) 98, 243, 256
Ama87I CYCGRG 1 cut(s) 192
ApeKI GCWGC 4 cut(s) 92, 161, 164, 503
AseI ATTAAT 1 cut(s) 387
AspLEI GCGC 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 192
BamHI GGATCC 1 cut(s) 248
BbvI GCAGC 4 cut(s) 79, 151, 173, 490
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 101, 450
BisI GCNGC 5 cut(s) 93, 162, 165, 315, 504
BlsI GCNGC 5 cut(s) 94, 163, 166, 316, 505
Bme1390I CCNGG 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 75, 472
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 1 cut(s) 471
BseMII CTCAG 2 cut(s) 216, 258
BseRI GAGGAG 1 cut(s) 410
BseXI GCAGC 4 cut(s) 79, 151, 173, 490
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 496
BslFI GGGAC 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 175
BsmI GAATGC 1 cut(s) 130
BsoBI CYCGRG 1 cut(s) 192
Bsp143I GATC 2 cut(s) 103, 248
BspACI CCGC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 217, 257
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 3 cut(s) 98, 243, 256
BsrBI CCGCTC 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 2 cut(s) 103, 248
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 455
Bst6I CTCTTC 2 cut(s) 50, 222
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 90, 159, 312
BstDEI CTNAG 2 cut(s) 225, 244
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 508
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 2 cut(s) 106, 251
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 103, 248
BstMWI GCNNNNNNNGC 2 cut(s) 419, 512
BstNI CCWGG 1 cut(s) 455
BstNSI RCATGY 1 cut(s) 495
BstSCI CCNGG 1 cut(s) 453
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 4 cut(s) 79, 151, 173, 490
BstX2I RGATCY 2 cut(s) 103, 248
BstYI RGATCY 2 cut(s) 103, 248
BtsCI GGATG 1 cut(s) 471
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 3 cut(s) 90, 159, 312
CfoI GCGC 1 cut(s) 508
CviAII CATG 1 cut(s) 492
CviJI RGCY 7 cut(s) 7, 92, 164, 229, 400, 422, 453
CviKI_1 RGCY 7 cut(s) 7, 92, 164, 229, 400, 422, 453
DdeI CTNAG 2 cut(s) 225, 244
DpnI GATC 2 cut(s) 105, 250
DpnII GATC 2 cut(s) 103, 248
Eam1104I CTCTTC 2 cut(s) 50, 222
EarI CTCTTC 2 cut(s) 50, 222
Eco130I CCWWGG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 1 cut(s) 495
FaiI YATR 6 cut(s) 171, 182, 258, 306, 441, 493
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 491
Fnu4HI GCNGC 5 cut(s) 93, 162, 165, 315, 504
FokI GGATG 1 cut(s) 478
Fsp4HI GCNGC 5 cut(s) 93, 162, 165, 315, 504
FspBI CTAG 2 cut(s) 101, 450
GlaI GCGC 1 cut(s) 507
GluI GCNGC 5 cut(s) 93, 162, 165, 315, 504
GsaI CCCAGC 1 cut(s) 404
HapII CCGG 1 cut(s) 496
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 1 cut(s) 495
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 3 cut(s) 80, 197, 266
HpaII CCGG 1 cut(s) 496
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 4 cut(s) 123, 226, 292, 337
Hpy188III TCNNGA 3 cut(s) 107, 192, 246
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 88, 161, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 512
HpyF3I CTNAG 2 cut(s) 225, 244
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 1 cut(s) 495
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 103, 248
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 8 cut(s) 120, 153, 231, 386, 437, 440, 467, 509
Lsp1109I GCAGC 4 cut(s) 79, 151, 173, 490
LweI GCATC 2 cut(s) 75, 472
MaeI CTAG 2 cut(s) 101, 450
MaeIII GTNAC 3 cut(s) 55, 445, 509
MalI GATC 2 cut(s) 105, 250
MbiI CCGCTC 1 cut(s) 317
MboI GATC 2 cut(s) 103, 248
MboII GAAGA 2 cut(s) 37, 209
MflI RGATCY 2 cut(s) 103, 248
MluCI AATT 2 cut(s) 61, 388
MlyI GAGTC 2 cut(s) 74, 191
MnlI CCTC 4 cut(s) 7, 388, 398, 481
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 496
MspR9I CCNGG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 2 cut(s) 419, 512
NdeII GATC 2 cut(s) 103, 248
NlaIII CATG 1 cut(s) 495
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 55, 509
NspI RCATGY 1 cut(s) 495
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 5 cut(s) 94, 163, 166, 316, 505
PleI GAGTC 2 cut(s) 74, 191
PpsI GAGTC 2 cut(s) 74, 191
PshBI ATTAAT 1 cut(s) 387
PsiI TTATAA 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 103, 248
PvuII CAGCTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 5 cut(s) 93, 162, 165, 315, 504
Sau3AI GATC 2 cut(s) 103, 248
SchI GAGTC 2 cut(s) 74, 191
ScrFI CCNGG 1 cut(s) 455
SetI ASST 7 cut(s) 9, 18, 94, 166, 231, 402, 447
SfaNI GCATC 2 cut(s) 75, 472
Sse9I AATT 2 cut(s) 61, 388
SsiI CCGC 1 cut(s) 315
SspMI CTAG 2 cut(s) 101, 450
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 61, 388
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 2 cut(s) 55, 509
TseI GCWGC 4 cut(s) 92, 161, 164, 503
Tsp45I GTSAC 2 cut(s) 55, 509
TspDTI ATGAA 3 cut(s) 17, 37, 209
TspRI CASTG 1 cut(s) 207
VspI ATTAAT 1 cut(s) 387
XceI RCATGY 1 cut(s) 495
XspI CTAG 2 cut(s) 101, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.