Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007405

Physical Location & Seq

Genomic Coordinates Forward (+)

14970377 .. 14973065

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G124200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGGCGTTTGAGGTCAATGGGAACACTCTCTCTCTTGCTCTCTTCACTGAAGTCACCAACTCCAAGGAGCTGCTTGATTCTATGCAATCTGGGACACTAGACCCCGAAGTCGCGTTCCTGAATGCTTCACTGATACCAGATGTTTTTCCTTTGCTTGCAGCTGCACATAAGACACTTGTAGCCAAGTCCCGAGAGTCGCTGACAACGCGCACTCTTCATTCTGAGCTTGTTTACAATTACTCAGGATCCAAGCATATCACAGAATCGTTGAAAAGATGTGGCATCTCTGAAAGCTCGACTTATGTGCTTGCCGCTCGTTTTAATGCTTCTTCTGAAGAGATTGAACAGAAAGCAGTAGAGAAACTAATCAATGGAAAAGAGATTGACTTGGAGGAGTTGGGAGGTAGAGCAGACCAAGCCCAAATACAAAAGCACTATAAGATAACTAGCGTGGAACTAGGGATATCTTCTCTTGCTGATGCCATTACTTGCCGGATTGCCTCTCGTGATGCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CGI-121

Protein Analysis

174

Amino Acids

18.85

Weight (kDa)

5.41

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34412
fragaria_vesca	FvH4_2g06110 FvH4_2g06110 FvH4_2g06110 FvH4_2g06110
malus_domestica	MD05G1080500.v1.1 MD10G1094500.v1.1
prunus_persica	Prupe.2G172700_v2.0.a1 Prupe.4G258000_v2.0.a1 Prupe.4G259300_v2.0.a1 Prupe.6G016400_v2.0.a1 Prupe.8G124200_v2.0.a1 Prupe.8G124200_v2.0.a1 Prupe.8G124200_v2.0.a1
pyrus_communis	pycom10g07800
rosa_chinensis	RchiOBHm_Chr6g0257111
rosa_laevigata	RLG00000014676
rosa_multiflora	Rmu_sc0000659.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208500
rosa_rugosa	Rorug05G0575300
rosa_samantha	Rh6AG093300 Rh6BG084100 Rh6CG080700 Rh6DG076100
rosa_wichuraiana	Rw6G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	317
AccII	CGCG	2 cut(s)	116, 211
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	2 cut(s)	243, 256
AcuI	CTGAAG	2 cut(s)	72, 357
AgsI	TTSAA	2 cut(s)	274, 347
AluBI	AGCT	4 cut(s)	73, 164, 229, 297
AluI	AGCT	4 cut(s)	73, 164, 229, 297
AlwI	GGATC	2 cut(s)	243, 256
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	73, 161, 164
AspLEI	GCGC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	192
BamHI	GGATCC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	60, 151, 173
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BfaI	CTAG	3 cut(s)	101, 450, 461
BisI	GCNGC	4 cut(s)	74, 162, 165, 315
BlsI	GCNGC	4 cut(s)	75, 163, 166, 316
BmeT110I	CYCGRG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	3 cut(s)	294, 472, 502
BsaJI	CCNNGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	216, 258
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	3 cut(s)	60, 151, 173
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	116, 211
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	496
BslFI	GGGAC	2 cut(s)	109, 175
BsmFI	GGGAC	2 cut(s)	109, 175
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	217, 257
BspFNI	CGCG	2 cut(s)	116, 211
BspLI	GGNNCC	1 cut(s)	250
BspPI	GGATC	2 cut(s)	243, 256
BsrBI	CCGCTC	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	507
Bst6I	CTCTTC	3 cut(s)	50, 222, 333
BstC8I	GCNNGC	2 cut(s)	159, 312
BstDEI	CTNAG	2 cut(s)	225, 244
BstFNI	CGCG	2 cut(s)	116, 211
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	248
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 419
BstUI	CGCG	2 cut(s)	116, 211
BstV1I	GCAGC	3 cut(s)	60, 151, 173
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	48, 131
Cac8I	GCNNGC	2 cut(s)	159, 312
CfoI	GCGC	1 cut(s)	213
CviJI	RGCY	6 cut(s)	73, 164, 185, 229, 297, 422
CviKI_1	RGCY	6 cut(s)	73, 164, 185, 229, 297, 422
DdeI	CTNAG	2 cut(s)	225, 244
DpnI	GATC	1 cut(s)	250
DpnII	GATC	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	3 cut(s)	50, 222, 333
EarI	CTCTTC	3 cut(s)	50, 222, 333
Eco130I	CCWWGG	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	72, 357
Eco88I	CYCGRG	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaiI	YATR	5 cut(s)	86, 171, 258, 306, 441
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	109, 175
Fnu4HI	GCNGC	4 cut(s)	74, 162, 165, 315
Fsp4HI	GCNGC	4 cut(s)	74, 162, 165, 315
FspBI	CTAG	3 cut(s)	101, 450, 461
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	4 cut(s)	74, 162, 165, 315
HapII	CCGG	1 cut(s)	496
HhaI	GCGC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	80, 197, 266
HpaII	CCGG	1 cut(s)	496
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	3 cut(s)	226, 292, 337
Hpy188III	TCNNGA	4 cut(s)	121, 192, 246, 509
Hpy8I	GTNNAC	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	88, 161, 167
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 419
HpyF3I	CTNAG	2 cut(s)	225, 244
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	5 cut(s)	78, 134, 153, 231, 509
Lsp1109I	GCAGC	3 cut(s)	60, 151, 173
LweI	GCATC	3 cut(s)	294, 472, 502
MaeI	CTAG	3 cut(s)	101, 450, 461
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	250
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	1 cut(s)	248
MboII	GAAGA	5 cut(s)	37, 209, 324, 350, 462
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	7, 388, 398, 514
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	496
Mva1269I	GAATGC	1 cut(s)	130
MvnI	CGCG	2 cut(s)	116, 211
MwoI	GCNNNNNNNGC	2 cut(s)	208, 419
NdeII	GATC	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	80, 266
PkrI	GCNGC	4 cut(s)	75, 163, 166, 316
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	74, 162, 165, 315
Sau3AI	GATC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	206
SetI	ASST	6 cut(s)	18, 75, 166, 231, 299, 409
SfaNI	GCATC	3 cut(s)	294, 472, 502
Sse9I	AATT	1 cut(s)	238
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	3 cut(s)	101, 450, 461
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	238
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	80, 266
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	55, 138
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	73, 161, 164
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	17, 209
TspRI	CASTG	2 cut(s)	55, 138
XspI	CTAG	3 cut(s)	101, 450, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.