Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007405

Physical Location & Seq

Genomic Coordinates Reverse (-)

77088830 .. 77089132

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0575300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTGATCCTCCCCTCCTACCCTCCTACCTCCCCTGGTCCCCGACCCCAAACGCGGATTTCCGCTCCTGCGAGGCCTACCTCGGCAACGGCTTCACCCGCCGGGTCGATCTCCTGAAGCCCACTAAAGATTCCGGCAGCTGGTTCCGGTGCGCATTCAGCGAGACCCTGAGGAGCTCGGCGTGCGAGGGACGGAGGATCCGGATGGTGCCGGAGAGGGTGAAGATGCCCGATTGGCGGCGAGGTTTTGGAGGATGTGATTGGGAGAGGGGAGGAGGAGGAGGAGGAGGAGGAGTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CGI-121

Protein Analysis

100

Amino Acids

11.01

Weight (kDa)

9.16

Isoelectric Point (pI)

76.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007405)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34412
fragaria_vesca	FvH4_2g06110 FvH4_2g06110 FvH4_2g06110 FvH4_2g06110
malus_domestica	MD05G1080500.v1.1 MD10G1094500.v1.1
prunus_persica	Prupe.2G172700_v2.0.a1 Prupe.4G258000_v2.0.a1 Prupe.4G259300_v2.0.a1 Prupe.6G016400_v2.0.a1 Prupe.8G124200_v2.0.a1 Prupe.8G124200_v2.0.a1 Prupe.8G124200_v2.0.a1
pyrus_communis	pycom10g07800
rosa_chinensis	RchiOBHm_Chr6g0257111
rosa_laevigata	RLG00000014676
rosa_multiflora	Rmu_sc0000659.1_g000005
rosa_roxburghii	Rroxscaffold_7G00208500
rosa_rugosa	Rorug05G0575300
rosa_samantha	Rh6AG093300 Rh6BG084100 Rh6CG080700 Rh6DG076100
rosa_wichuraiana	Rw6G008020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	154
AccB1I	GGYRCC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	4 cut(s)	56, 64, 100, 238
AclWI	GGATC	3 cut(s)	2, 193, 206
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	55, 141, 237
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	141, 177
AluI	AGCT	2 cut(s)	141, 177
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	3 cut(s)	2, 193, 206
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	88, 232
AvaII	GGWCC	1 cut(s)	39
AxyI	CCTNAGG	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	235
BisI	GCNGC	2 cut(s)	139, 239
BlsI	GCNGC	2 cut(s)	140, 240
Bme1390I	CCNGG	2 cut(s)	37, 104
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	4 cut(s)	41, 146, 200, 210
BmrFI	CCNGG	2 cut(s)	37, 104
BmsI	GCATC	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	35, 82
BsaWI	WCCGGW	2 cut(s)	147, 201
BsaXI	ACNNNNNCTCC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 141, 237
Bse21I	CCTNAGG	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	2 cut(s)	35, 82
BseGI	GGATG	2 cut(s)	210, 260
BseLI	CCNNNNNNNGG	3 cut(s)	55, 141, 237
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	7 cut(s)	187, 288, 291, 294, 297, 300, 303
BseXI	GCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	5 cut(s)	103, 135, 148, 202, 212
BslFI	GGGAC	2 cut(s)	25, 204
BslI	CCNNNNNNNGG	3 cut(s)	55, 141, 237
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	2 cut(s)	25, 204
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	77
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	7, 109, 198
BspACI	CCGC	4 cut(s)	56, 64, 100, 238
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	4 cut(s)	41, 146, 200, 210
BspPI	GGATC	3 cut(s)	2, 193, 206
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	35, 82
BssMI	GATC	3 cut(s)	7, 109, 198
Bst2UI	CCWGG	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	2 cut(s)	210, 260
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	10, 112, 201
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	3 cut(s)	7, 109, 198
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 159, 183, 235
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	35, 102
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	2 cut(s)	210, 260
Cac8I	GCNNGC	1 cut(s)	184
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	39
CviJI	RGCY	6 cut(s)	5, 77, 93, 121, 141, 177
CviKI_1	RGCY	6 cut(s)	5, 77, 93, 121, 141, 177
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	9, 111, 200
DpnII	GATC	3 cut(s)	7, 109, 198
Ecl136II	GAGCTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	179
FaqI	GGGAC	2 cut(s)	25, 204
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	139, 239
FokI	GGATG	2 cut(s)	217, 267
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	139, 239
FspAI	RTGCGCAY	1 cut(s)	154
FspI	TGCGCA	1 cut(s)	154
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	2 cut(s)	139, 239
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	5 cut(s)	103, 135, 148, 202, 212
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	5 cut(s)	103, 135, 148, 202, 212
HphI	GGTGA	2 cut(s)	88, 232
Hpy188III	TCNNGA	2 cut(s)	115, 202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 159, 183, 235
HpyF3I	CTNAG	1 cut(s)	170
HspAI	GCGC	1 cut(s)	153
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	7, 109, 198
LmnI	GCTCC	2 cut(s)	71, 174
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	216
MalI	GATC	3 cut(s)	9, 111, 200
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	3 cut(s)	7, 109, 198
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	179
MroI	TCCGGA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	5 cut(s)	103, 135, 148, 202, 212
MspR9I	CCNGG	2 cut(s)	37, 104
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	99, 159, 183, 235
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	3 cut(s)	7, 109, 198
NlaIV	GGNNCC	4 cut(s)	41, 146, 200, 210
NmeAIII	GCCGAG	2 cut(s)	63, 158
NsbI	TGCGCA	1 cut(s)	154
PceI	AGGCCT	1 cut(s)	77
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	140, 240
Psp124BI	GAGCTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	41, 146, 200, 210
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	179
SatI	GCNGC	2 cut(s)	139, 239
Sau3AI	GATC	3 cut(s)	7, 109, 198
Sau96I	GGNCC	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	37, 104
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	5 cut(s)	33, 84, 143, 179, 247
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	39
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	4 cut(s)	56, 64, 100, 238
SstI	GAGCTC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	35, 102
TaqI	TCGA	1 cut(s)	108
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.