FvH4_2g07210

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016254
Physical Location & Seq
Forward (+)
5979000 .. 5983404
4405 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07210.t1

Sequence Viewer

Length: 1242 bp
ATGGTGGTCCCCAGAACCAGAGGCGGATCAGACGACGGCGCCAAGAATGGAACCGCAGCGGTCTCCGACTACGAGAAAATCAGAGAGCAGAGGATCAAAGAGAACCGGGCGAGAATGCAGAACATGGGCATTTTCGACCTTTCGCGCCAGATCCACTCCTTCAAACCTAACCCTCCCAAACGCCCTCGCCGGACTAATCCTCCTTCTGATCAGCCCAAAGCCCAATTCCCCACACGGCGCTCTTCTAGGTTGCAGAATGTGGCTCCTGTAAACTATGATCAAACCGTAAGGAAGGTCTCACATGAACCAAAAGCAAGAAGAGTGAGGAGGGACCGTTCTGAAAATGTGGGAAATCCCAATAGGAAGAGAAGGTTCTCTGACTCTGATTCTGAAACTGATGACTCATCATCAGACTCAGGCTCAGACTTGGAGTTGGACTCTGACTCTGACTCTGAGGTGAAAGTTCGCGTACGAATTGCGAGTTCTGGGTCTCCACCGAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCGGTGAGTTATGTGGAAACTACTCCCAAAAAGGAGAGGGAGCCCTCAGACTCAGAGAGTGCCGAGGGAGAGTCCTTGGTGGATGACTGTGGAAAAGATGATGGGGTGAAGGATGAAACTTGTCACCAATGCAGGCAGAGAACTCTTGGTGATCTTACACATTGCAGCAAATGTGACTTGGTTCAAGGGCAATTTTGTGGAGATTGCTTGGATATGAGATATGGAGAGATTGTGATTGAAGCCAAACAAAATCCTGATTGGGTGTGCCCTGTTTGTCGAGGTATCTGTAACTGCAGTGTCTGCTTGAAGAGGAAGACACAGGATTTAATGCATGATGATATCAACAAAGAAATGGAGGAGGGATACCTCATGGGGAAATATGTGAATTTCTTGGGTAGTGAGCATGTTCCTGCAGAAGACGTGGGCAAGCTACATGCTGCTACTATTGCTTGTGATGTTGATGGGGAGACAAAGAAAGATCCAAAAATGAGTATGAGGATGAGTGGTACACTTGTTGGTGGAGAAGACATAGGCAAGCTAGATGCTGGTGGTGATGTTGATGGTGAATCATATGAGGAACCAAGAAGGAGCACAAGGATGAGTATTGCACATGTTGTTGCAGAAGACCTGGGTAACCTAGAAGCTGCTGGTGATGTTGTTGATGGTGAGACGATAAAGGAACCAAGAAGGAGCACAAGGATGAGGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

414

Amino Acids

46.05

Weight (kDa)

6.15

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 213 - 298 1.5e-28 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 38
AccII CGCG 2 cut(s) 145, 468
AciI CCGC 3 cut(s) 24, 54, 59
AclWI GGATC 4 cut(s) 34, 101, 145, 1001
AcsI RAATTY 1 cut(s) 913
AcyI GRCGYC 1 cut(s) 39
AfaI GTAC 2 cut(s) 471, 1036
AflIII ACRYGT 1 cut(s) 1138
AgsI TTSAA 4 cut(s) 163, 713, 767, 835
AjiI CACGTC 1 cut(s) 949
AjnI CCWGG 1 cut(s) 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
AluBI AGCT 3 cut(s) 958, 1066, 1172
AluI AGCT 3 cut(s) 958, 1066, 1172
Alw21I GWGCWC 2 cut(s) 1121, 1223
Alw26I GTCTC 5 cut(s) 67, 301, 495, 989, 1190
AlwI GGATC 4 cut(s) 34, 101, 145, 1001
AlwNI CAGNNNCTG 1 cut(s) 828
ApeKI GCWGC 4 cut(s) 56, 693, 965, 1172
ApoI RAATTY 1 cut(s) 913
AspLEI GCGC 4 cut(s) 41, 147, 240, 504
AspS9I GGNCC 2 cut(s) 7, 331
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 9 cut(s) 469, 544, 644, 646, 689, 1091, 1103, 1190, 1205
AvaII GGWCC 2 cut(s) 7, 331
BaeGI GKGCMC 1 cut(s) 797
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 573
BbsI GAAGAC 4 cut(s) 848, 951, 1059, 1158
Bbv12I GWGCWC 2 cut(s) 1121, 1223
BbvI GCAGC 4 cut(s) 68, 705, 952, 1159
BccI CCATC 4 cut(s) 623, 983, 1082, 1184
BceAI ACGGC 2 cut(s) 52, 251
BciT130I CCWGG 1 cut(s) 1157
BciVI GTATCC 1 cut(s) 884
BclI TGATCA 2 cut(s) 208, 277
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 5 cut(s) 67, 301, 495, 989, 1190
BfaI CTAG 4 cut(s) 246, 510, 1067, 1166
BfmI CTRYAG 2 cut(s) 820, 939
BfoI RGCGCY 3 cut(s) 42, 241, 505
BfuI GTATCC 1 cut(s) 884
BisI GCNGC 4 cut(s) 57, 694, 966, 1173
BlsI GCNGC 4 cut(s) 58, 695, 967, 1174
Bme1390I CCNGG 2 cut(s) 107, 1157
Bme18I GGWCC 2 cut(s) 7, 331
BmgBI CACGTC 1 cut(s) 949
BmgT120I GGNCC 2 cut(s) 7, 331
BmiI GGNNCC 9 cut(s) 9, 40, 52, 264, 332, 528, 570, 1107, 1209
BmrFI CCNGG 2 cut(s) 107, 1157
BmsI GCATC 1 cut(s) 1060
BpiI GAAGAC 4 cut(s) 848, 951, 1059, 1158
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpuMI CCSGG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 3 cut(s) 67, 301, 495
BsaJI CCNNGG 4 cut(s) 497, 591, 603, 1156
BsaWI WCCGGW 1 cut(s) 529
BsaXI ACNNNNNCTCC 6 cut(s) 184, 214, 319, 349, 744, 774
Bse3DI GCAATG 1 cut(s) 688
BseBI CCWGG 1 cut(s) 1157
BseDI CCNNGG 4 cut(s) 497, 591, 603, 1156
BseGI GGATG 5 cut(s) 616, 646, 1032, 1131, 1233
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 5 cut(s) 429, 435, 444, 588, 594
BseRI GAGGAG 2 cut(s) 340, 899
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 4 cut(s) 68, 705, 952, 1159
Bsh1236I CGCG 2 cut(s) 145, 468
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 1121, 1223
BsiSI CCGG 3 cut(s) 106, 190, 530
BsiWI CGTACG 1 cut(s) 469
BslFI GGGAC 1 cut(s) 344
BsmAI GTCTC 5 cut(s) 67, 301, 495, 989, 1190
BsmBI CGTCTC 1 cut(s) 1190
BsmFI GGGAC 1 cut(s) 344
BsmI GAATGC 1 cut(s) 120
Bso31I GGTCTC 3 cut(s) 67, 301, 495
Bsp1286I GDGCHC 4 cut(s) 573, 797, 1121, 1223
Bsp143I GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
BspACI CCGC 3 cut(s) 24, 54, 59
BspCNI CTCAG 5 cut(s) 428, 434, 445, 587, 593
BspFNI CGCG 2 cut(s) 145, 468
BspLI GGNNCC 9 cut(s) 9, 40, 52, 264, 332, 528, 570, 1107, 1209
BspMAI CTGCAG 2 cut(s) 824, 943
BspPI GGATC 4 cut(s) 34, 101, 145, 1001
BspQI GCTCTTC 2 cut(s) 247, 511
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 3 cut(s) 67, 301, 495
BsrDI GCAATG 1 cut(s) 688
BssECI CCNNGG 4 cut(s) 497, 591, 603, 1156
BssMI GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 1 cut(s) 1157
Bst4CI ACNGT 3 cut(s) 286, 335, 617
Bst6I CTCTTC 5 cut(s) 247, 313, 359, 511, 830
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 828
BstC8I GCNNGC 3 cut(s) 662, 956, 1064
BstDEI CTNAG 5 cut(s) 415, 421, 453, 574, 580
BstEII GGTNACC 1 cut(s) 1160
BstF5I GGATG 5 cut(s) 616, 646, 1032, 1131, 1233
BstFNI CGCG 2 cut(s) 145, 468
BstH2I RGCGCY 3 cut(s) 42, 241, 505
BstHHI GCGC 4 cut(s) 41, 147, 240, 504
BstKTI GATC 7 cut(s) 29, 96, 153, 211, 280, 682, 1009
BstMAI GTCTC 5 cut(s) 67, 301, 495, 989, 1190
BstMBI GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 828, 974
BstNI CCWGG 1 cut(s) 1157
BstNSI RCATGY 3 cut(s) 935, 965, 1142
BstPI GGTNACC 1 cut(s) 1160
BstSCI CCNGG 2 cut(s) 105, 1155
BstSFI CTRYAG 2 cut(s) 820, 939
BstSLI GKGCMC 1 cut(s) 797
BstUI CGCG 2 cut(s) 145, 468
BstV1I GCAGC 4 cut(s) 68, 705, 952, 1159
BstV2I GAAGAC 4 cut(s) 848, 951, 1059, 1158
BstX2I RGATCY 2 cut(s) 150, 1006
BstYI RGATCY 2 cut(s) 150, 1006
BsuI GTATCC 1 cut(s) 884
BtrI CACGTC 1 cut(s) 949
BtsCI GGATG 5 cut(s) 616, 646, 1032, 1131, 1233
BtsI GCAGTG 1 cut(s) 829
BtsIMutI CAGTG 1 cut(s) 829
Cac8I GCNNGC 3 cut(s) 662, 956, 1064
CaiI CAGNNNCTG 1 cut(s) 828
CfoI GCGC 4 cut(s) 41, 147, 240, 504
Cfr13I GGNCC 2 cut(s) 7, 331
Csp6I GTAC 2 cut(s) 470, 1035
CviAII CATG 7 cut(s) 124, 302, 860, 898, 932, 962, 1139
CviQI GTAC 2 cut(s) 470, 1035
DdeI CTNAG 5 cut(s) 415, 421, 453, 574, 580
DinI GGCGCC 1 cut(s) 40
DpnI GATC 7 cut(s) 28, 95, 152, 210, 279, 681, 1008
DpnII GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
Eam1104I CTCTTC 5 cut(s) 247, 313, 359, 511, 830
EarI CTCTTC 5 cut(s) 247, 313, 359, 511, 830
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 573
Eco31I GGTCTC 3 cut(s) 67, 301, 495
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 2 cut(s) 7, 331
Eco91I GGTNACC 1 cut(s) 1160
EcoO65I GGTNACC 1 cut(s) 1160
EcoRII CCWGG 1 cut(s) 1155
EcoRV GATATC 1 cut(s) 868
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 573
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 1190
FaeI CATG 7 cut(s) 127, 305, 863, 901, 935, 965, 1142
FaqI GGGAC 1 cut(s) 344
FatI CATG 7 cut(s) 123, 301, 859, 897, 931, 961, 1138
FauNDI CATATG 1 cut(s) 1099
FbaI TGATCA 2 cut(s) 208, 277
Fnu4HI GCNGC 4 cut(s) 57, 694, 966, 1173
FokI GGATG 4 cut(s) 623, 653, 1039, 1138
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 4 cut(s) 57, 694, 966, 1173
FspBI CTAG 4 cut(s) 246, 510, 1067, 1166
GlaI GCGC 4 cut(s) 40, 146, 239, 503
GluI GCNGC 4 cut(s) 57, 694, 966, 1173
HaeII RGCGCY 3 cut(s) 42, 241, 505
HapII CCGG 3 cut(s) 106, 190, 530
HhaI GCGC 4 cut(s) 41, 147, 240, 504
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 7 cut(s) 127, 305, 863, 901, 935, 965, 1142
Hin6I GCGC 4 cut(s) 39, 145, 238, 502
HinP1I GCGC 4 cut(s) 39, 145, 238, 502
HpaII CCGG 3 cut(s) 106, 190, 530
HphI GGTGA 9 cut(s) 469, 544, 644, 646, 689, 1091, 1103, 1190, 1205
Hpy166II GTNNAC 2 cut(s) 271, 1037
Hpy188III TCNNGA 1 cut(s) 782
Hpy8I GTNNAC 2 cut(s) 271, 1037
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 7 cut(s) 169, 213, 286, 363, 631, 1107, 1209
HpyCH4III ACNGT 3 cut(s) 286, 335, 617
HpyCH4IV ACGT 1 cut(s) 948
HpyCH4V TGCA 9 cut(s) 118, 253, 660, 693, 822, 859, 941, 1136, 1148
HpyF10VI GCNNNNNNNGC 2 cut(s) 828, 974
HpyF3I CTNAG 5 cut(s) 415, 421, 453, 574, 580
HpySE526I ACGT 1 cut(s) 948
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 7 cut(s) 127, 305, 863, 901, 935, 965, 1142
HspAI GCGC 4 cut(s) 39, 145, 238, 502
KasI GGCGCC 1 cut(s) 38
Ksp22I TGATCA 2 cut(s) 208, 277
Kzo9I GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
LguI GCTCTTC 2 cut(s) 247, 511
LmnI GCTCC 5 cut(s) 268, 532, 568, 1116, 1218
Lsp1109I GCAGC 4 cut(s) 68, 705, 952, 1159
LweI GCATC 1 cut(s) 1060
MaeI CTAG 4 cut(s) 246, 510, 1067, 1166
MaeII ACGT 1 cut(s) 948
MaeIII GTNAC 4 cut(s) 650, 701, 815, 1160
MalI GATC 7 cut(s) 28, 95, 152, 210, 279, 681, 1008
MboI GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
MboII GAAGA 9 cut(s) 234, 330, 376, 498, 847, 853, 956, 1064, 1163
MflI RGATCY 2 cut(s) 150, 1006
MhlI GDGCHC 4 cut(s) 573, 797, 1121, 1223
MluCI AATT 4 cut(s) 224, 474, 719, 913
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 8 cut(s) 374, 395, 407, 431, 437, 443, 572, 608
MmeI TCCRAC 2 cut(s) 90, 414
Mph1103I ATGCAT 1 cut(s) 861
MseI TTAA 1 cut(s) 854
MslI CAYNNNNRTG 2 cut(s) 1124, 1226
MspA1I CMGCKG 1 cut(s) 59
MspI CCGG 3 cut(s) 106, 190, 530
MspR9I CCNGG 2 cut(s) 107, 1157
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 1157
MvnI CGCG 2 cut(s) 145, 468
MwoI GCNNNNNNNGC 2 cut(s) 828, 974
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 1 cut(s) 107
NdeI CATATG 1 cut(s) 1099
NdeII GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
NlaIII CATG 7 cut(s) 127, 305, 863, 901, 935, 965, 1142
NlaIV GGNNCC 9 cut(s) 9, 40, 52, 264, 332, 528, 570, 1107, 1209
NmeAIII GCCGAG 1 cut(s) 616
NmuCI GTSAC 2 cut(s) 650, 701
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 3 cut(s) 935, 965, 1142
PciI ACATGT 1 cut(s) 1138
PciSI GCTCTTC 2 cut(s) 247, 511
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 386, 1094
Pfl23II CGTACG 1 cut(s) 469
PkrI GCNGC 4 cut(s) 58, 695, 967, 1174
PleI GAGTC 8 cut(s) 374, 395, 407, 431, 437, 443, 572, 607
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 8 cut(s) 374, 395, 407, 431, 437, 443, 572, 607
PscI ACATGT 1 cut(s) 1138
Psp6I CCWGG 1 cut(s) 1155
PspEI GGTNACC 1 cut(s) 1160
PspGI CCWGG 1 cut(s) 1155
PspLI CGTACG 1 cut(s) 469
PspN4I GGNNCC 9 cut(s) 9, 40, 52, 264, 332, 528, 570, 1107, 1209
PspPI GGNCC 2 cut(s) 7, 331
PstI CTGCAG 2 cut(s) 824, 943
PstNI CAGNNNCTG 1 cut(s) 828
PsuI RGATCY 2 cut(s) 150, 1006
RsaI GTAC 2 cut(s) 471, 1036
RsaNI GTAC 2 cut(s) 470, 1035
RseI CAYNNNNRTG 2 cut(s) 1124, 1226
SapI GCTCTTC 2 cut(s) 247, 511
SaqAI TTAA 1 cut(s) 854
SatI GCNGC 4 cut(s) 57, 694, 966, 1173
Sau3AI GATC 7 cut(s) 26, 93, 150, 208, 277, 679, 1006
Sau96I GGNCC 2 cut(s) 7, 331
SchI GAGTC 8 cut(s) 374, 395, 407, 431, 437, 443, 572, 608
ScrFI CCNGG 2 cut(s) 107, 1157
SduI GDGCHC 4 cut(s) 573, 797, 1121, 1223
SfaNI GCATC 1 cut(s) 1060
SfcI CTRYAG 2 cut(s) 820, 939
SfoI GGCGCC 1 cut(s) 40
SinI GGWCC 2 cut(s) 7, 331
SmiMI CAYNNNNRTG 2 cut(s) 1124, 1226
Sse9I AATT 4 cut(s) 224, 474, 719, 913
SsiI CCGC 3 cut(s) 24, 54, 59
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 4 cut(s) 246, 510, 1067, 1166
StyD4I CCNGG 2 cut(s) 105, 1155
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 3 cut(s) 286, 335, 617
TaiI ACGT 1 cut(s) 951
TaqI TCGA 2 cut(s) 135, 805
TasI AATT 4 cut(s) 224, 474, 719, 913
TfiI GAWTC 2 cut(s) 386, 1094
Tru1I TTAA 1 cut(s) 854
Tru9I TTAA 1 cut(s) 854
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 2 cut(s) 650, 701
TseI GCWGC 4 cut(s) 56, 693, 965, 1172
Tsp45I GTSAC 2 cut(s) 650, 701
TspDTI ATGAA 2 cut(s) 318, 657
TspRI CASTG 1 cut(s) 829
VpaK11BI GGWCC 2 cut(s) 7, 331
XapI RAATTY 1 cut(s) 913
XceI RCATGY 3 cut(s) 935, 965, 1142
XspI CTAG 4 cut(s) 246, 510, 1067, 1166
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.