RLG00000014513

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016254
Physical Location & Seq
Reverse (-)
54141862 .. 54145457
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014513

Sequence Viewer

Length: 1326 bp
ATGGTGGTTCGGAGCGGAGCCGACGAGAATGGAAGCGCGGGGGTTTCCGACTACGAGAAAATCAGAGAGCAAAGGATCAAAGAGAACCTGGCCAGAATGCAGAACATGGGCATTTTCGACCTTTCACGCCAGCTCCACTCCTTCAAACCTAACCCTCCCAAACGCGCTCGCCGGAGTCCTCCTTCCGATCAGCCCAAAACCCACAACTCGATTCCCACAAGACGCTCCTCCAGGTTGCAGAATGTGGCTCCTGTAACCTATGTGGAAACTGTGAGGAAGGTCTCAGTTGAACCAAGAAGAAGAGTAAGGAAGGCTTCTCAAAATGCAAGGAACCCCAATGGTGGGAAGAGAAGGACATCAGACACTGAATCAGAAACTGACTCAGAATCAGACTCAGCCTCAGACTTGGACTTTGACTCTGACTCTGATTCTGAGGTTAAAGTTCGCATACAGATTTCAAATTCTGGGTCTCCACCAAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCAGTGAGTTATGTGGAAGCTAGTCCTAAAAAGGAGAAAGAGCTGTCAGAGAGTGTTGAAGGAGAGTACTTGGTGGATGACTATGGAGAAGATGGGAAGCGCATTGATGATGGGGTCAAGAATGAAACTTGTCACCAATGCAGGCAGAGAACTCTTGGCGATCTTACTCATTGCAGCAAATGTGACTCGCTTCAAGGGCAGATTTGTGGAGATTGCTTGGATATGAGATATGGAGAGAATGTGATTAAAGCCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGTATCTGTAACTGCAGTCTCTGCTTGAGTAGGAAGACACAGGAATTAATGCATGATGATATCAAAGAAGAAATGGAGGGATGCGTCATGGGGAAAGAGGTGAACTTCTTAGGTAGTGAGCATGTTCCTACAGAAGACTTGTGCAAGCTAGATGCTGCTACTATTGCTTGTGATGTTGATGGTAAGACAAATAAAGAACCAAAAAGGAGCAAGAGCACGATTAGTGCGCATGTTGCTGCAGAAGACATGGACAAGCTAGATGCTGCTGGTGATGTTGTTGATGGTGAGACAAATATAGAACCAAGAAGGAGCGCGAGGACAAGTAGTTCGCATGTTGCTGCAGAAGACCTGGGCAACCCAGATGCTGCTGGTGTTGTTGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGAAGTAGTGGGCATGTTGCTTTAGAAGACATGGGCCCCCTACATGCTGCTGGTGACGTTGATGGTGAAAAAAAGAAACAACTAAGAAGGAGCACAAGGATGAAGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

442

Amino Acids

48.82

Weight (kDa)

6.84

Isoelectric Point (pI)

61.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 208 - 282 1.5e-25 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1023
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 3 cut(s) 38, 165, 1109
AciI CCGC 2 cut(s) 15, 38
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 341, 342
AgsI TTSAA 5 cut(s) 145, 290, 459, 566, 701
AjnI CCWGG 3 cut(s) 87, 230, 1143
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
AloI GAACNNNNNNTCC 2 cut(s) 1105, 1137
AluBI AGCT 5 cut(s) 133, 527, 550, 943, 1051
AluI AGCT 5 cut(s) 133, 527, 550, 943, 1051
Alw21I GWGCWC 3 cut(s) 1013, 1208, 1307
Alw26I GTCTC 5 cut(s) 286, 474, 818, 1076, 1178
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 4 cut(s) 365, 377, 816, 1160
AoxI GGCC 2 cut(s) 90, 1246
ApaI GGGCCC 1 cut(s) 1250
ApeKI GCWGC 7 cut(s) 681, 950, 1031, 1058, 1133, 1160, 1259
ApoI RAATTY 1 cut(s) 460
ArsI GACNNNNNNTTYG 6 cut(s) 395, 427, 452, 484, 1105, 1137
AseI ATTAAT 1 cut(s) 842
AspLEI GCGC 6 cut(s) 38, 167, 483, 609, 1024, 1109
AspS9I GGNCC 2 cut(s) 1246, 1247
AsuHPI GGTGA 7 cut(s) 632, 907, 1076, 1091, 1193, 1277, 1289
BaeGI GKGCMC 1 cut(s) 1250
BalI TGGCCA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 1250
BbsI GAAGAC 5 cut(s) 836, 936, 1044, 1146, 1245
Bbv12I GWGCWC 3 cut(s) 1013, 1208, 1307
BbvI GCAGC 7 cut(s) 693, 937, 1018, 1045, 1120, 1147, 1246
BccI CCATC 5 cut(s) 593, 611, 968, 1070, 1268
BciT130I CCWGG 3 cut(s) 89, 232, 1145
BcoDI GTCTC 5 cut(s) 286, 474, 818, 1076, 1178
BfaI CTAG 4 cut(s) 489, 528, 944, 1052
BfmI CTRYAG 4 cut(s) 808, 924, 1032, 1134
BfoI RGCGCY 1 cut(s) 484
BisI GCNGC 7 cut(s) 682, 951, 1032, 1059, 1134, 1161, 1260
BlsI GCNGC 7 cut(s) 683, 952, 1033, 1060, 1135, 1162, 1261
BmcAI AGTACT 1 cut(s) 575
Bme1390I CCNGG 3 cut(s) 89, 232, 1145
BmgT120I GGNCC 2 cut(s) 1246, 1247
BmiI GGNNCC 6 cut(s) 19, 249, 332, 507, 1248, 1249
BmrFI CCNGG 3 cut(s) 89, 232, 1145
BmsI GCATC 4 cut(s) 866, 937, 1045, 1147
BpiI GAAGAC 5 cut(s) 836, 936, 1044, 1146, 1245
BpmI CTGGAG 2 cut(s) 214, 492
BpuEI CTTGAG 1 cut(s) 841
BsaI GGTCTC 2 cut(s) 286, 474
BsaJI CCNNGG 2 cut(s) 476, 1144
BsaXI ACNNNNNCTCC 6 cut(s) 117, 147, 732, 762, 1204, 1234
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 342
Bse1I ACTGG 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 3 cut(s) 89, 232, 1145
BseDI CCNNGG 2 cut(s) 476, 1144
BseGI GGATG 3 cut(s) 589, 881, 1317
BseLI CCNNNNNNNGG 2 cut(s) 341, 342
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 5 cut(s) 297, 396, 408, 414, 423
BseNI ACTGG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 1250
BseXI GCAGC 7 cut(s) 693, 937, 1018, 1045, 1120, 1147, 1246
Bsh1236I CGCG 3 cut(s) 38, 165, 1109
BshFI GGCC 2 cut(s) 92, 1248
BsiHKAI GWGCWC 3 cut(s) 1013, 1208, 1307
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 341, 342
BsmAI GTCTC 5 cut(s) 286, 474, 818, 1076, 1178
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 92, 1248
Bso31I GGTCTC 2 cut(s) 286, 474
Bsp120I GGGCCC 1 cut(s) 1246
Bsp1286I GDGCHC 4 cut(s) 1013, 1208, 1250, 1307
Bsp143I GATC 3 cut(s) 75, 187, 667
BspACI CCGC 2 cut(s) 15, 38
BspANI GGCC 2 cut(s) 92, 1248
BspCNI CTCAG 5 cut(s) 296, 395, 407, 413, 424
BspFNI CGCG 3 cut(s) 38, 165, 1109
BspLI GGNNCC 6 cut(s) 19, 249, 332, 507, 1248, 1249
BspMAI CTGCAG 3 cut(s) 812, 1036, 1138
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 490
BspTNI GGTCTC 2 cut(s) 286, 474
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 676
BsrI ACTGG 1 cut(s) 509
BssECI CCNNGG 2 cut(s) 476, 1144
BssMI GATC 3 cut(s) 75, 187, 667
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 3 cut(s) 89, 232, 1145
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 4 cut(s) 295, 341, 490, 1310
BstAPI GCANNNNNTGC 1 cut(s) 816
BstC8I GCNNGC 4 cut(s) 131, 169, 650, 941
BstDEI CTNAG 7 cut(s) 283, 382, 394, 400, 432, 904, 1295
BstF5I GGATG 3 cut(s) 589, 881, 1317
BstFNI CGCG 3 cut(s) 38, 165, 1109
BstH2I RGCGCY 1 cut(s) 484
BstHHI GCGC 6 cut(s) 38, 167, 483, 609, 1024, 1109
BstKTI GATC 3 cut(s) 78, 190, 670
BstMAI GTCTC 5 cut(s) 286, 474, 818, 1076, 1178
BstMBI GATC 3 cut(s) 75, 187, 667
BstMWI GCNNNNNNNGC 4 cut(s) 703, 816, 959, 1028
BstNI CCWGG 3 cut(s) 89, 232, 1145
BstNSI RCATGY 5 cut(s) 920, 1028, 1130, 1229, 1259
BstSCI CCNGG 3 cut(s) 87, 230, 1143
BstSFI CTRYAG 4 cut(s) 808, 924, 1032, 1134
BstSLI GKGCMC 1 cut(s) 1250
BstUI CGCG 3 cut(s) 38, 165, 1109
BstV1I GCAGC 7 cut(s) 693, 937, 1018, 1045, 1120, 1147, 1246
BstV2I GAAGAC 5 cut(s) 836, 936, 1044, 1146, 1245
BsuRI GGCC 2 cut(s) 92, 1248
BtsCI GGATG 3 cut(s) 589, 881, 1317
BtsIMutI CAGTG 2 cut(s) 363, 516
Cac8I GCNNGC 4 cut(s) 131, 169, 650, 941
CaiI CAGNNNCTG 4 cut(s) 365, 377, 816, 1160
CfoI GCGC 6 cut(s) 38, 167, 483, 609, 1024, 1109
Cfr13I GGNCC 2 cut(s) 1246, 1247
CseI GACGC 2 cut(s) 231, 868
Csp6I GTAC 1 cut(s) 574
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 7 cut(s) 283, 382, 394, 400, 432, 904, 1295
DpnI GATC 3 cut(s) 77, 189, 669
DpnII GATC 3 cut(s) 75, 187, 667
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 4 cut(s) 295, 341, 490, 1310
EarI CTCTTC 4 cut(s) 295, 341, 490, 1310
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 1250
Eco31I GGTCTC 2 cut(s) 286, 474
Eco32I GATATC 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 1247
EcoRII CCWGG 3 cut(s) 87, 230, 1143
EcoRV GATATC 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 476
EcoT22I ATGCAT 1 cut(s) 849
EcoT38I GRGCYC 1 cut(s) 1250
ErhI CCWWGG 1 cut(s) 476
FalI AAGNNNNNCTT 4 cut(s) 298, 330, 469, 501
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 7 cut(s) 682, 951, 1032, 1059, 1134, 1161, 1260
FokI GGATG 2 cut(s) 596, 888
FriOI GRGCYC 1 cut(s) 1250
Fsp4HI GCNGC 7 cut(s) 682, 951, 1032, 1059, 1134, 1161, 1260
FspAI RTGCGCAY 1 cut(s) 1023
FspBI CTAG 4 cut(s) 489, 528, 944, 1052
FspI TGCGCA 1 cut(s) 1023
GlaI GCGC 6 cut(s) 37, 166, 482, 608, 1023, 1108
GluI GCNGC 7 cut(s) 682, 951, 1032, 1059, 1134, 1161, 1260
GsuI CTGGAG 2 cut(s) 214, 492
HaeII RGCGCY 1 cut(s) 484
HaeIII GGCC 2 cut(s) 92, 1248
HapII CCGG 1 cut(s) 172
HgaI GACGC 2 cut(s) 231, 868
HhaI GCGC 6 cut(s) 38, 167, 483, 609, 1024, 1109
Hin6I GCGC 6 cut(s) 36, 165, 481, 607, 1022, 1107
HinP1I GCGC 6 cut(s) 36, 165, 481, 607, 1022, 1107
HpaII CCGG 1 cut(s) 172
HphI GGTGA 7 cut(s) 632, 907, 1076, 1091, 1193, 1277, 1289
Hpy166II GTNNAC 1 cut(s) 898
Hpy188III TCNNGA 2 cut(s) 625, 770
Hpy8I GTNNAC 1 cut(s) 898
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 9 cut(s) 151, 192, 271, 304, 345, 560, 1095, 1194, 1293
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 1269
HpyF10VI GCNNNNNNNGC 4 cut(s) 703, 816, 959, 1028
HpyF3I CTNAG 7 cut(s) 283, 382, 394, 400, 432, 904, 1295
HpySE526I ACGT 1 cut(s) 1269
HspAI GCGC 6 cut(s) 36, 165, 481, 607, 1022, 1107
Kzo9I GATC 3 cut(s) 75, 187, 667
LguI GCTCTTC 1 cut(s) 490
Lsp1109I GCAGC 7 cut(s) 693, 937, 1018, 1045, 1120, 1147, 1246
LweI GCATC 4 cut(s) 866, 937, 1045, 1147
MaeI CTAG 4 cut(s) 489, 528, 944, 1052
MaeII ACGT 1 cut(s) 1269
MaeIII GTNAC 5 cut(s) 253, 638, 689, 803, 1265
MalI GATC 3 cut(s) 77, 189, 669
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 75, 187, 667
MhlI GDGCHC 4 cut(s) 1013, 1208, 1250, 1307
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 460, 839
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 6 cut(s) 184, 374, 386, 410, 416, 686
MmeI TCCRAC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 849
MscI TGGCCA 1 cut(s) 92
MseI TTAA 3 cut(s) 438, 753, 842
MslI CAYNNNNRTG 1 cut(s) 1310
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 3 cut(s) 89, 232, 1145
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 3 cut(s) 89, 232, 1145
MvnI CGCG 3 cut(s) 38, 165, 1109
MwoI GCNNNNNNNGC 4 cut(s) 703, 816, 959, 1028
NdeII GATC 3 cut(s) 75, 187, 667
NlaIV GGNNCC 6 cut(s) 19, 249, 332, 507, 1248, 1249
NmuCI GTSAC 3 cut(s) 638, 689, 1265
NsbI TGCGCA 1 cut(s) 1023
NsiI ATGCAT 1 cut(s) 849
NspI RCATGY 5 cut(s) 920, 1028, 1130, 1229, 1259
PciSI GCTCTTC 1 cut(s) 490
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 4 cut(s) 211, 368, 386, 428
PkrI GCNGC 7 cut(s) 683, 952, 1033, 1060, 1135, 1162, 1261
PleI GAGTC 6 cut(s) 183, 374, 386, 410, 416, 686
PpsI GAGTC 6 cut(s) 183, 374, 386, 410, 416, 686
PshBI ATTAAT 1 cut(s) 842
Psp6I CCWGG 3 cut(s) 87, 230, 1143
PspGI CCWGG 3 cut(s) 87, 230, 1143
PspN4I GGNNCC 6 cut(s) 19, 249, 332, 507, 1248, 1249
PspOMI GGGCCC 1 cut(s) 1246
PspPI GGNCC 2 cut(s) 1246, 1247
PstI CTGCAG 3 cut(s) 812, 1036, 1138
PstNI CAGNNNCTG 4 cut(s) 365, 377, 816, 1160
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 1310
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 438, 753, 842
SatI GCNGC 7 cut(s) 682, 951, 1032, 1059, 1134, 1161, 1260
Sau3AI GATC 3 cut(s) 75, 187, 667
Sau96I GGNCC 2 cut(s) 1246, 1247
ScaI AGTACT 1 cut(s) 575
SchI GAGTC 6 cut(s) 184, 374, 386, 410, 416, 686
ScrFI CCNGG 3 cut(s) 89, 232, 1145
SduI GDGCHC 4 cut(s) 1013, 1208, 1250, 1307
SfaNI GCATC 4 cut(s) 866, 937, 1045, 1147
SfcI CTRYAG 4 cut(s) 808, 924, 1032, 1134
SmiMI CAYNNNNRTG 1 cut(s) 1310
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
Sse9I AATT 2 cut(s) 460, 839
SsiI CCGC 2 cut(s) 15, 38
SspMI CTAG 4 cut(s) 489, 528, 944, 1052
StyD4I CCNGG 3 cut(s) 87, 230, 1143
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 1272
TaqI TCGA 2 cut(s) 117, 209
TasI AATT 2 cut(s) 460, 839
TatI WGTACW 1 cut(s) 573
TfiI GAWTC 4 cut(s) 211, 368, 386, 428
Tru1I TTAA 3 cut(s) 438, 753, 842
Tru9I TTAA 3 cut(s) 438, 753, 842
TscAI CASTG 2 cut(s) 370, 516
TseFI GTSAC 3 cut(s) 638, 689, 1265
TseI GCWGC 7 cut(s) 681, 950, 1031, 1058, 1133, 1160, 1259
Tsp45I GTSAC 3 cut(s) 638, 689, 1265
TspDTI ATGAA 2 cut(s) 645, 1166
TspRI CASTG 2 cut(s) 370, 516
VspI ATTAAT 1 cut(s) 842
XapI RAATTY 1 cut(s) 460
XceI RCATGY 5 cut(s) 920, 1028, 1130, 1229, 1259
XspI CTAG 4 cut(s) 489, 528, 944, 1052
ZrmI AGTACT 1 cut(s) 575
Zsp2I ATGCAT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.