Rroxscaffold_7G00206990

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016254
Physical Location & Seq
Forward (+)
56836481 .. 56840527
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206990.1

Sequence Viewer

Length: 1431 bp
ATGGTGGTCCGGAGCGGAGCCGACGACGGAACCGCCGAGAACGGAAGCGCGGGGGTTTCCGACTACGAGAAAATCAGAGAGCAAAGGATCAAAGAGAACCTGGCCAGAATGCAGAACATGGGCATTTTCGACCTTTCACGCCAGCTCCACTCCTTCAAACCTAACCCTCCCAAACGCGCTCGCCGGAGTCCTCCTTCCGATCAGCCCAAAACCCACAACTCAGTTCCCACAAGACGCTCCTCCAGGTTGCAGAATGTGGCTCCTGTAACCTATGTGGAAACTGTAAGGAAGGTCTCAGTTGAACCAAGAAGAAGAGTAAGGAAGGCTTCTCAAAATGCAAGGAACCCCAATGGTGGGAAGAGAAGGACATCAGACACTGAATCAGAGACTGACTCAGAATCAGACTCAGGCTCAGACTTGGAGTTCGACTCAGACTCTGACTCTGAGGTTAAAGTTCGCATACAGATTTTAAATTCTGGGTCTCCACCAAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCAGTGAGTTATGTGGAAGCTAGTCCTAAAAAGGAGAAAGAGCTGTCAGACAGTGTTGAAGGAGAGTACTTGGTGGATGACTATGGAGAAGATGGGAAGCGCATTGATGATGGGGTCAAGGATGAAACTTGTCACCAATGCAGGCAGAGAACTCTTGGTGATCTTACTCATTGCAACAAATGTGAGTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTGGATATGAGATATGGAGAGAATGTGATGAAAACCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGTATCTGTAACTGCAGTCTCTGCTTGAGCAGGAAGGAATTAATGCATGATGATATCAAAGAAGAAATGGAGGGATGCCTCATGGGGAAAGAGGTGAACTTCTTAGGTAGTGAGCATGTTCCTACAGAAGACGTGTGCAAGCTAGATGCTGCTACTATTGCTTGTGATGTTGATGGTAAGACCAAGAAAGAACCAAAAGGGAGCACGAGCACGATTAGCGCGCATGTTGCTGCAGAAGACATGGACAAGCTAGATGCTGCTGGTGATGCTGTTGGTGGTGAGACAAATTTAGAACCAAGAAGGAGCACGAGGACAAGCAGTTCGCATGTTGCTGCAGAAGACCTGGGCAACCCAGATGCTGCTGGTGATGCTGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGAAGTAGTGGGCATGTTGCTGCAGAAGATATGGGCCACCTAGTTGCTGCTGGTGACGCTGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGGGAAGTAGTGGGCATGTTGCTGCAGAAGATATGGGCCACCTAGATGCTGCTGGTGACGTTGATGGTGAAAAAAAGAAACAACTAAGAAGGAGCACAAGGACGAGGGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

476

Amino Acids

52.13

Weight (kDa)

6.21

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 213 - 284 1e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 3 cut(s) 50, 177, 1028
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 3 cut(s) 15, 33, 50
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 2 cut(s) 472, 1093
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 353, 354
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 3 cut(s) 157, 302, 578
AjiI CACGTC 1 cut(s) 940
AjnI CCWGG 3 cut(s) 99, 242, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AloI GAACNNNNNNTCC 2 cut(s) 1111, 1143
AluBI AGCT 5 cut(s) 145, 539, 562, 949, 1057
AluI AGCT 5 cut(s) 145, 539, 562, 949, 1057
Alw21I GWGCWC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
Alw26I GTCTC 7 cut(s) 298, 380, 486, 830, 1082, 1184, 1283
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 5 cut(s) 377, 389, 437, 828, 1166
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 3 cut(s) 102, 1252, 1351
ApeKI GCWGC 9 cut(s) 956, 1037, 1064, 1139, 1166, 1238, 1265, 1337, 1364
ApoI RAATTY 2 cut(s) 472, 1093
ArsI GACNNNNNNTTYG 4 cut(s) 407, 439, 1111, 1143
AseI ATTAAT 1 cut(s) 848
AspLEI GCGC 6 cut(s) 50, 179, 495, 621, 1028, 1030
AspS9I GGNCC 4 cut(s) 7, 709, 1252, 1351
AvaII GGWCC 2 cut(s) 7, 709
BalI TGGCCA 1 cut(s) 104
BauI CACGAG 2 cut(s) 1012, 1114
BbsI GAAGAC 3 cut(s) 942, 1050, 1152
Bbv12I GWGCWC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
BbvI GCAGC 9 cut(s) 943, 1024, 1051, 1126, 1153, 1225, 1252, 1324, 1351
BccI CCATC 4 cut(s) 605, 623, 974, 1373
BciT130I CCWGG 3 cut(s) 101, 244, 1151
BcoDI GTCTC 7 cut(s) 298, 380, 486, 830, 1082, 1184, 1283
BfaI CTAG 6 cut(s) 501, 540, 950, 1058, 1259, 1358
BfmI CTRYAG 6 cut(s) 820, 930, 1038, 1140, 1239, 1338
BfoI RGCGCY 1 cut(s) 496
BisI GCNGC 9 cut(s) 957, 1038, 1065, 1140, 1167, 1239, 1266, 1338, 1365
BlsI GCNGC 9 cut(s) 958, 1039, 1066, 1141, 1168, 1240, 1267, 1339, 1366
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 3 cut(s) 101, 244, 1151
Bme18I GGWCC 2 cut(s) 7, 709
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 4 cut(s) 7, 709, 1252, 1351
BmiI GGNNCC 5 cut(s) 19, 31, 261, 344, 519
BmrFI CCNGG 3 cut(s) 101, 244, 1151
BmsI GCATC 7 cut(s) 872, 943, 1051, 1063, 1153, 1165, 1351
BpiI GAAGAC 3 cut(s) 942, 1050, 1152
BplI GAGNNNNNCTC 4 cut(s) 377, 409, 413, 445
BpmI CTGGAG 2 cut(s) 226, 504
BpuEI CTTGAG 1 cut(s) 853
BsaI GGTCTC 2 cut(s) 298, 486
BsaJI CCNNGG 3 cut(s) 488, 712, 1150
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 6 cut(s) 129, 159, 744, 774, 1210, 1240
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 354
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 688
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 3 cut(s) 101, 244, 1151
BseDI CCNNGG 3 cut(s) 488, 712, 1150
BseGI GGATG 3 cut(s) 601, 646, 887
BseLI CCNNNNNNNGG 2 cut(s) 353, 354
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 7 cut(s) 234, 309, 408, 420, 426, 435, 444
BseNI ACTGG 1 cut(s) 521
BsePI GCGCGC 1 cut(s) 1026
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 9 cut(s) 943, 1024, 1051, 1126, 1153, 1225, 1252, 1324, 1351
Bsh1236I CGCG 3 cut(s) 50, 177, 1028
BshFI GGCC 3 cut(s) 104, 1254, 1353
BsiHKAI GWGCWC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
BsiSI CCGG 2 cut(s) 10, 184
BslI CCNNNNNNNGG 2 cut(s) 353, 354
BsmAI GTCTC 7 cut(s) 298, 380, 486, 830, 1082, 1184, 1283
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 3 cut(s) 104, 1254, 1353
Bso31I GGTCTC 2 cut(s) 298, 486
Bsp1286I GDGCHC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 3 cut(s) 87, 199, 679
BspACI CCGC 3 cut(s) 15, 33, 50
BspANI GGCC 3 cut(s) 104, 1254, 1353
BspCNI CTCAG 7 cut(s) 233, 308, 407, 419, 425, 436, 443
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 3 cut(s) 50, 177, 1028
BspLI GGNNCC 5 cut(s) 19, 31, 261, 344, 519
BspMAI CTGCAG 5 cut(s) 824, 1042, 1144, 1243, 1342
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 502
BspTNI GGTCTC 2 cut(s) 298, 486
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 488, 712, 1150
BssHII GCGCGC 1 cut(s) 1026
BssMI GATC 3 cut(s) 87, 199, 679
BssSI CACGAG 2 cut(s) 1012, 1114
BssT1I CCWWGG 2 cut(s) 488, 712
Bst2BI CACGAG 2 cut(s) 1012, 1114
Bst2UI CCWGG 3 cut(s) 101, 244, 1151
Bst4CI ACNGT 2 cut(s) 283, 572
Bst6I CTCTTC 3 cut(s) 307, 353, 502
BstAPI GCANNNNNTGC 1 cut(s) 828
BstC8I GCNNGC 5 cut(s) 143, 181, 662, 947, 1028
BstDEI CTNAG 9 cut(s) 220, 295, 394, 406, 412, 430, 444, 910, 1400
BstF5I GGATG 3 cut(s) 601, 646, 887
BstFNI CGCG 3 cut(s) 50, 177, 1028
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 6 cut(s) 50, 179, 495, 621, 1028, 1030
BstKTI GATC 3 cut(s) 90, 202, 682
BstMAI GTCTC 7 cut(s) 298, 380, 486, 830, 1082, 1184, 1283
BstMBI GATC 3 cut(s) 87, 199, 679
BstMWI GCNNNNNNNGC 7 cut(s) 828, 965, 1023, 1034, 1073, 1175, 1274
BstNI CCWGG 3 cut(s) 101, 244, 1151
BstNSI RCATGY 5 cut(s) 926, 1034, 1136, 1235, 1334
BstSCI CCNGG 3 cut(s) 99, 242, 1149
BstSFI CTRYAG 6 cut(s) 820, 930, 1038, 1140, 1239, 1338
BstUI CGCG 3 cut(s) 50, 177, 1028
BstV1I GCAGC 9 cut(s) 943, 1024, 1051, 1126, 1153, 1225, 1252, 1324, 1351
BstV2I GAAGAC 3 cut(s) 942, 1050, 1152
BsuRI GGCC 3 cut(s) 104, 1254, 1353
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 3 cut(s) 601, 646, 887
BtsIMutI CAGTG 3 cut(s) 375, 528, 577
Cac8I GCNNGC 5 cut(s) 143, 181, 662, 947, 1028
CaiI CAGNNNCTG 5 cut(s) 377, 389, 437, 828, 1166
CfoI GCGC 6 cut(s) 50, 179, 495, 621, 1028, 1030
Cfr13I GGNCC 4 cut(s) 7, 709, 1252, 1351
CseI GACGC 2 cut(s) 243, 1283
Csp6I GTAC 1 cut(s) 586
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 9 cut(s) 220, 295, 394, 406, 412, 430, 444, 910, 1400
DpnI GATC 3 cut(s) 89, 201, 681
DpnII GATC 3 cut(s) 87, 199, 679
DraI TTTAAA 1 cut(s) 471
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 307, 353, 502
EarI CTCTTC 3 cut(s) 307, 353, 502
Eco130I CCWWGG 2 cut(s) 488, 712
Eco31I GGTCTC 2 cut(s) 298, 486
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 2 cut(s) 7, 709
EcoRII CCWGG 3 cut(s) 99, 242, 1149
EcoRV GATATC 1 cut(s) 862
EcoT14I CCWWGG 2 cut(s) 488, 712
EcoT22I ATGCAT 1 cut(s) 855
ErhI CCWWGG 2 cut(s) 488, 712
FalI AAGNNNNNCTT 4 cut(s) 310, 342, 481, 513
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 9 cut(s) 957, 1038, 1065, 1140, 1167, 1239, 1266, 1338, 1365
FokI GGATG 3 cut(s) 608, 653, 894
Fsp4HI GCNGC 9 cut(s) 957, 1038, 1065, 1140, 1167, 1239, 1266, 1338, 1365
FspBI CTAG 6 cut(s) 501, 540, 950, 1058, 1259, 1358
GlaI GCGC 6 cut(s) 49, 178, 494, 620, 1027, 1029
GluI GCNGC 9 cut(s) 957, 1038, 1065, 1140, 1167, 1239, 1266, 1338, 1365
GsuI CTGGAG 2 cut(s) 226, 504
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 3 cut(s) 104, 1254, 1353
HapII CCGG 2 cut(s) 10, 184
HgaI GACGC 2 cut(s) 243, 1283
HhaI GCGC 6 cut(s) 50, 179, 495, 621, 1028, 1030
Hin6I GCGC 6 cut(s) 48, 177, 493, 619, 1026, 1028
HinP1I GCGC 6 cut(s) 48, 177, 493, 619, 1026, 1028
HinfI GANTC 8 cut(s) 187, 380, 392, 398, 404, 428, 434, 440
HpaII CCGG 2 cut(s) 10, 184
Hpy166II GTNNAC 1 cut(s) 904
Hpy188III TCNNGA 2 cut(s) 10, 782
Hpy8I GTNNAC 1 cut(s) 904
Hpy99I CGWCG 2 cut(s) 26, 29
HpyCH4III ACNGT 2 cut(s) 283, 572
HpyCH4IV ACGT 2 cut(s) 939, 1374
HpyF10VI GCNNNNNNNGC 7 cut(s) 828, 965, 1023, 1034, 1073, 1175, 1274
HpyF3I CTNAG 9 cut(s) 220, 295, 394, 406, 412, 430, 444, 910, 1400
HpySE526I ACGT 2 cut(s) 939, 1374
HspAI GCGC 6 cut(s) 48, 177, 493, 619, 1026, 1028
Kpn2I TCCGGA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 87, 199, 679
LguI GCTCTTC 1 cut(s) 502
Lsp1109I GCAGC 9 cut(s) 943, 1024, 1051, 1126, 1153, 1225, 1252, 1324, 1351
LweI GCATC 7 cut(s) 872, 943, 1051, 1063, 1153, 1165, 1351
MaeI CTAG 6 cut(s) 501, 540, 950, 1058, 1259, 1358
MaeII ACGT 2 cut(s) 939, 1374
MaeIII GTNAC 5 cut(s) 265, 650, 815, 1271, 1370
MalI GATC 3 cut(s) 89, 201, 681
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 87, 199, 679
MhlI GDGCHC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 3 cut(s) 472, 845, 1093
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 6 cut(s) 196, 386, 398, 422, 428, 434
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 9 cut(s) 177, 201, 250, 439, 871, 892, 896, 1110, 1413
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 855
MroI TCCGGA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 450, 470, 848
MslI CAYNNNNRTG 1 cut(s) 1359
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 2 cut(s) 10, 184
MspR9I CCNGG 3 cut(s) 101, 244, 1151
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 3 cut(s) 101, 244, 1151
MvnI CGCG 3 cut(s) 50, 177, 1028
MwoI GCNNNNNNNGC 7 cut(s) 828, 965, 1023, 1034, 1073, 1175, 1274
NdeII GATC 3 cut(s) 87, 199, 679
NlaIV GGNNCC 5 cut(s) 19, 31, 261, 344, 519
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 650, 1271, 1370
NsiI ATGCAT 1 cut(s) 855
NspI RCATGY 5 cut(s) 926, 1034, 1136, 1235, 1334
PauI GCGCGC 1 cut(s) 1026
PciSI GCTCTTC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 380, 398
PkrI GCNGC 9 cut(s) 958, 1039, 1066, 1141, 1168, 1240, 1267, 1339, 1366
PleI GAGTC 6 cut(s) 195, 386, 398, 422, 428, 434
PpsI GAGTC 6 cut(s) 195, 386, 398, 422, 428, 434
PshBI ATTAAT 1 cut(s) 848
Psp6I CCWGG 3 cut(s) 99, 242, 1149
PspGI CCWGG 3 cut(s) 99, 242, 1149
PspN4I GGNNCC 5 cut(s) 19, 31, 261, 344, 519
PspPI GGNCC 4 cut(s) 7, 709, 1252, 1351
PstI CTGCAG 5 cut(s) 824, 1042, 1144, 1243, 1342
PstNI CAGNNNCTG 5 cut(s) 377, 389, 437, 828, 1166
PteI GCGCGC 1 cut(s) 1026
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 1 cut(s) 1359
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 450, 470, 848
SatI GCNGC 9 cut(s) 957, 1038, 1065, 1140, 1167, 1239, 1266, 1338, 1365
Sau3AI GATC 3 cut(s) 87, 199, 679
Sau96I GGNCC 4 cut(s) 7, 709, 1252, 1351
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 6 cut(s) 196, 386, 398, 422, 428, 434
ScrFI CCNGG 3 cut(s) 101, 244, 1151
SduI GDGCHC 6 cut(s) 1013, 1019, 1115, 1214, 1313, 1412
SfaNI GCATC 7 cut(s) 872, 943, 1051, 1063, 1153, 1165, 1351
SfcI CTRYAG 6 cut(s) 820, 930, 1038, 1140, 1239, 1338
SinI GGWCC 2 cut(s) 7, 709
SmiMI CAYNNNNRTG 1 cut(s) 1359
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 3 cut(s) 472, 845, 1093
SsiI CCGC 3 cut(s) 15, 33, 50
SspMI CTAG 6 cut(s) 501, 540, 950, 1058, 1259, 1358
StyD4I CCNGG 3 cut(s) 99, 242, 1149
StyI CCWWGG 2 cut(s) 488, 712
TaaI ACNGT 2 cut(s) 283, 572
TaiI ACGT 2 cut(s) 942, 1377
TaqI TCGA 2 cut(s) 129, 426
TasI AATT 3 cut(s) 472, 845, 1093
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 2 cut(s) 380, 398
Tru1I TTAA 3 cut(s) 450, 470, 848
Tru9I TTAA 3 cut(s) 450, 470, 848
TscAI CASTG 3 cut(s) 382, 528, 577
TseFI GTSAC 3 cut(s) 650, 1271, 1370
TseI GCWGC 9 cut(s) 956, 1037, 1064, 1139, 1166, 1238, 1265, 1337, 1364
Tsp45I GTSAC 3 cut(s) 650, 1271, 1370
TspDTI ATGAA 4 cut(s) 657, 779, 1172, 1271
TspGWI ACGGA 2 cut(s) 42, 57
TspRI CASTG 3 cut(s) 382, 528, 577
VpaK11BI GGWCC 2 cut(s) 7, 709
VspI ATTAAT 1 cut(s) 848
XapI RAATTY 2 cut(s) 472, 1093
XceI RCATGY 5 cut(s) 926, 1034, 1136, 1235, 1334
XspI CTAG 6 cut(s) 501, 540, 950, 1058, 1259, 1358
ZrmI AGTACT 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.