Rh6AG106600

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0016254
Physical Location & Seq
Forward (+)
15658806 .. 15662992
4187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG106600.1

Sequence Viewer

Length: 1338 bp
ATGGTGGTTCGGAGCGAAGCCGACGAGAATGGAAGCGCGGGGGTTTCCGACTACGAGAAAATCAGAGAGCAAAGGATCAAAGAGAACCTGGCCAGAATGCAGAACATGGGCATTTTCGACCTTTCACGCCAGCTCCACTCCTTCAAACCTAACCCTCCCAAACGCCTTCGCCGGAGTCCTCCTTCCGATCAGTCCAAAACCCACAACTCGATTCCCACAAGACGCTCCTCCAGGTTGCAGAATGTGGCTCCTGTAACCTATGTGGAAACTGTAAGGAAGGTCTCAGTTGAACCAAAAAGAAGAGTAAGGAAGGCTTCTCAAAATGTAAGGAACCCCAATGGTGGGAAGAGAAGGACATCAGACACTGAATCAGAAACTGAATCAGAAACTGACTCAGAATCAGACTCAGCCTCAGACTTGGACTTTGACTCTGACTCTGACTCTGAGGTTAAAGTTCGCATACAGATTTCAAATTCTGGGTCTCCACCAAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCAGTGAGTTATGTGGAAGCTAGTCCTAAAAAGGAGAAAGAGCTGTCAGAGAGTGTTGAAGGAGAGTACTTGGTGGATGACTATGGAGAAGACGGGAAGCGCATTGATGATGGGGTCAAGGATGAAACTTGTCACCAATGCAGGCAGAGAACTCTGGGTGATCTTACTCATTGCAGCAAATGTGGCTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTGGATATGAGATATGGAGAGAATGTGATTAAAGCCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGATATCTGTAACTGCAGTCTCTGCTTGAGTAGGAAGACACAGGAATTAATGCATGATGATATCAAAGAAGAAATGGAGGGATGCCTCATGGGGAAAGAGGTGAACTTCTTAGGTAGTGTGCTTGTTCCTACAGAAGACGTGCGCAAGCTAGATGCTGCTACTATTGCTTGTGATGTTGATGGTAAGACAAAGAAAGAACCAAAAAGGAACACGAGCACGATTAGTGCGCATGTTGCTGCAGAAGACATGGACAAGCTAGATGCTGCTGGTGATGTTGTTGATTGTGAGACAAATATAGAATCAAGAAGGAGCACGAGGACAAGTAGTTTGCATGTTGCTGCAGAAGACCTGGGCACCCCAGATGCTGCTGGTGATGTCGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGTAGTAGTGGGCATGTTGCTGCAGAAGACATGGGCCACCTAGATGCTGCTGGTGACGTTGGTGGTGAAAAAAAGAAACAACTAAGAAGGAGCACAAGGATGAGGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

445

Amino Acids

49.4

Weight (kDa)

6.14

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 213 - 286 2.7e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 950, 1035
AccB1I GGYRCC 1 cut(s) 1160
AccII CGCG 1 cut(s) 38
AciI CCGC 1 cut(s) 38
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 1 cut(s) 472
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 2 cut(s) 341, 342
AgsI TTSAA 4 cut(s) 145, 290, 471, 578
AjiI CACGTC 1 cut(s) 946
AjnI CCWGG 3 cut(s) 87, 230, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 481, 513
AluBI AGCT 5 cut(s) 133, 539, 562, 955, 1063
AluI AGCT 5 cut(s) 133, 539, 562, 955, 1063
Alw21I GWGCWC 4 cut(s) 1025, 1121, 1220, 1319
Alw26I GTCTC 5 cut(s) 286, 486, 830, 1088, 1190
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 5 cut(s) 365, 377, 389, 828, 1172
AoxI GGCC 2 cut(s) 90, 1258
ApeKI GCWGC 8 cut(s) 693, 962, 1043, 1070, 1145, 1172, 1244, 1271
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 6 cut(s) 407, 439, 464, 496, 1117, 1149
AseI ATTAAT 1 cut(s) 854
AspLEI GCGC 5 cut(s) 38, 495, 621, 951, 1036
AspS9I GGNCC 2 cut(s) 709, 1258
AsuHPI GGTGA 8 cut(s) 644, 689, 919, 1088, 1190, 1205, 1289, 1301
AvaII GGWCC 1 cut(s) 709
BaeGI GKGCMC 1 cut(s) 1163
BalI TGGCCA 1 cut(s) 92
BanI GGYRCC 1 cut(s) 1160
BauI CACGAG 2 cut(s) 1018, 1120
BbsI GAAGAC 6 cut(s) 615, 848, 948, 1056, 1158, 1257
Bbv12I GWGCWC 4 cut(s) 1025, 1121, 1220, 1319
BbvI GCAGC 8 cut(s) 705, 949, 1030, 1057, 1132, 1159, 1231, 1258
BccI CCATC 2 cut(s) 623, 980
BciT130I CCWGG 3 cut(s) 89, 232, 1157
BcoDI GTCTC 5 cut(s) 286, 486, 830, 1088, 1190
BfaI CTAG 5 cut(s) 501, 540, 956, 1064, 1265
BfmI CTRYAG 5 cut(s) 820, 936, 1044, 1146, 1245
BfoI RGCGCY 1 cut(s) 496
BisI GCNGC 8 cut(s) 694, 963, 1044, 1071, 1146, 1173, 1245, 1272
BlsI GCNGC 8 cut(s) 695, 964, 1045, 1072, 1147, 1174, 1246, 1273
BmcAI AGTACT 1 cut(s) 587
Bme1390I CCNGG 3 cut(s) 89, 232, 1157
Bme18I GGWCC 1 cut(s) 709
BmgBI CACGTC 1 cut(s) 946
BmgT120I GGNCC 2 cut(s) 709, 1258
BmiI GGNNCC 4 cut(s) 249, 332, 519, 1162
BmrFI CCNGG 3 cut(s) 89, 232, 1157
BmsI GCATC 5 cut(s) 878, 949, 1057, 1159, 1258
BpiI GAAGAC 6 cut(s) 615, 848, 948, 1056, 1158, 1257
BpmI CTGGAG 2 cut(s) 214, 504
BpuEI CTTGAG 1 cut(s) 853
BsaI GGTCTC 2 cut(s) 286, 486
BsaJI CCNNGG 3 cut(s) 488, 712, 1156
BsaXI ACNNNNNCTCC 6 cut(s) 117, 147, 744, 774, 1216, 1246
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 342
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 688
BseBI CCWGG 3 cut(s) 89, 232, 1157
BseDI CCNNGG 3 cut(s) 488, 712, 1156
BseGI GGATG 4 cut(s) 601, 646, 893, 1329
BseLI CCNNNNNNNGG 2 cut(s) 341, 342
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 5 cut(s) 297, 408, 420, 426, 435
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 1163
BseXI GCAGC 8 cut(s) 705, 949, 1030, 1057, 1132, 1159, 1231, 1258
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 92, 1260
BshNI GGYRCC 1 cut(s) 1160
BsiHKAI GWGCWC 4 cut(s) 1025, 1121, 1220, 1319
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 2 cut(s) 341, 342
BsmAI GTCTC 5 cut(s) 286, 486, 830, 1088, 1190
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 2 cut(s) 92, 1260
Bso31I GGTCTC 2 cut(s) 286, 486
Bsp1286I GDGCHC 5 cut(s) 1025, 1121, 1163, 1220, 1319
Bsp143I GATC 3 cut(s) 75, 187, 679
BspACI CCGC 1 cut(s) 38
BspANI GGCC 2 cut(s) 92, 1260
BspCNI CTCAG 5 cut(s) 296, 407, 419, 425, 436
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 4 cut(s) 249, 332, 519, 1162
BspMAI CTGCAG 4 cut(s) 824, 1048, 1150, 1249
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 1160
BspTNI GGTCTC 2 cut(s) 286, 486
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 3 cut(s) 488, 712, 1156
BssMI GATC 3 cut(s) 75, 187, 679
BssSI CACGAG 2 cut(s) 1018, 1120
BssT1I CCWWGG 2 cut(s) 488, 712
Bst2BI CACGAG 2 cut(s) 1018, 1120
Bst2UI CCWGG 3 cut(s) 89, 232, 1157
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 3 cut(s) 295, 341, 502
BstAPI GCANNNNNTGC 1 cut(s) 828
BstC8I GCNNGC 3 cut(s) 131, 662, 953
BstDEI CTNAG 7 cut(s) 283, 394, 406, 412, 444, 916, 1307
BstF5I GGATG 4 cut(s) 601, 646, 893, 1329
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 5 cut(s) 38, 495, 621, 951, 1036
BstKTI GATC 3 cut(s) 78, 190, 682
BstMAI GTCTC 5 cut(s) 286, 486, 830, 1088, 1190
BstMBI GATC 3 cut(s) 75, 187, 679
BstMWI GCNNNNNNNGC 4 cut(s) 702, 828, 971, 1040
BstNI CCWGG 3 cut(s) 89, 232, 1157
BstNSI RCATGY 3 cut(s) 1040, 1142, 1241
BstSCI CCNGG 3 cut(s) 87, 230, 1155
BstSFI CTRYAG 5 cut(s) 820, 936, 1044, 1146, 1245
BstSLI GKGCMC 1 cut(s) 1163
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 8 cut(s) 705, 949, 1030, 1057, 1132, 1159, 1231, 1258
BstV2I GAAGAC 6 cut(s) 615, 848, 948, 1056, 1158, 1257
BsuRI GGCC 2 cut(s) 92, 1260
BtrI CACGTC 1 cut(s) 946
BtsCI GGATG 4 cut(s) 601, 646, 893, 1329
BtsIMutI CAGTG 2 cut(s) 363, 528
Cac8I GCNNGC 3 cut(s) 131, 662, 953
CaiI CAGNNNCTG 5 cut(s) 365, 377, 389, 828, 1172
CfoI GCGC 5 cut(s) 38, 495, 621, 951, 1036
Cfr13I GGNCC 2 cut(s) 709, 1258
CseI GACGC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 586
CviAII CATG 9 cut(s) 106, 860, 895, 1037, 1054, 1139, 1190, 1238, 1255
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 7 cut(s) 283, 394, 406, 412, 444, 916, 1307
DpnI GATC 3 cut(s) 77, 189, 681
DpnII GATC 3 cut(s) 75, 187, 679
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 3 cut(s) 295, 341, 502
EarI CTCTTC 3 cut(s) 295, 341, 502
Eco130I CCWWGG 2 cut(s) 488, 712
Eco31I GGTCTC 2 cut(s) 286, 486
Eco32I GATATC 2 cut(s) 811, 868
Eco47I GGWCC 1 cut(s) 709
EcoRII CCWGG 3 cut(s) 87, 230, 1155
EcoRV GATATC 2 cut(s) 811, 868
EcoT14I CCWWGG 2 cut(s) 488, 712
EcoT22I ATGCAT 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 488, 712
FaeI CATG 9 cut(s) 109, 863, 898, 1040, 1057, 1142, 1193, 1241, 1258
FalI AAGNNNNNCTT 4 cut(s) 298, 330, 481, 513
FatI CATG 9 cut(s) 105, 859, 894, 1036, 1053, 1138, 1189, 1237, 1254
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 8 cut(s) 694, 963, 1044, 1071, 1146, 1173, 1245, 1272
FokI GGATG 3 cut(s) 608, 653, 900
Fsp4HI GCNGC 8 cut(s) 694, 963, 1044, 1071, 1146, 1173, 1245, 1272
FspAI RTGCGCAY 1 cut(s) 1035
FspBI CTAG 5 cut(s) 501, 540, 956, 1064, 1265
FspI TGCGCA 2 cut(s) 950, 1035
GlaI GCGC 5 cut(s) 37, 494, 620, 950, 1035
GluI GCNGC 8 cut(s) 694, 963, 1044, 1071, 1146, 1173, 1245, 1272
GsuI CTGGAG 2 cut(s) 214, 504
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 2 cut(s) 92, 1260
HapII CCGG 1 cut(s) 172
HgaI GACGC 1 cut(s) 231
HhaI GCGC 5 cut(s) 38, 495, 621, 951, 1036
Hin1II CATG 9 cut(s) 109, 863, 898, 1040, 1057, 1142, 1193, 1241, 1258
Hin6I GCGC 5 cut(s) 36, 493, 619, 949, 1034
HinP1I GCGC 5 cut(s) 36, 493, 619, 949, 1034
HpaII CCGG 1 cut(s) 172
HphI GGTGA 8 cut(s) 644, 689, 919, 1088, 1190, 1205, 1289, 1301
Hpy166II GTNNAC 1 cut(s) 910
Hpy188III TCNNGA 3 cut(s) 782, 806, 1110
Hpy8I GTNNAC 1 cut(s) 910
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 2 cut(s) 945, 1281
HpyF10VI GCNNNNNNNGC 4 cut(s) 702, 828, 971, 1040
HpyF3I CTNAG 7 cut(s) 283, 394, 406, 412, 444, 916, 1307
HpySE526I ACGT 2 cut(s) 945, 1281
Hsp92II CATG 9 cut(s) 109, 863, 898, 1040, 1057, 1142, 1193, 1241, 1258
HspAI GCGC 5 cut(s) 36, 493, 619, 949, 1034
Kzo9I GATC 3 cut(s) 75, 187, 679
LguI GCTCTTC 1 cut(s) 502
LmnI GCTCC 8 cut(s) 12, 138, 230, 253, 523, 1116, 1215, 1314
Lsp1109I GCAGC 8 cut(s) 705, 949, 1030, 1057, 1132, 1159, 1231, 1258
LweI GCATC 5 cut(s) 878, 949, 1057, 1159, 1258
MaeI CTAG 5 cut(s) 501, 540, 956, 1064, 1265
MaeII ACGT 2 cut(s) 945, 1281
MaeIII GTNAC 4 cut(s) 253, 650, 815, 1277
MalI GATC 3 cut(s) 77, 189, 681
MboI GATC 3 cut(s) 75, 187, 679
MhlI GDGCHC 5 cut(s) 1025, 1121, 1163, 1220, 1319
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 472, 851
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 6 cut(s) 184, 386, 398, 422, 428, 434
MmeI TCCRAC 1 cut(s) 72
Mox20I TGGCCA 1 cut(s) 92
Mph1103I ATGCAT 1 cut(s) 861
MscI TGGCCA 1 cut(s) 92
MseI TTAA 3 cut(s) 450, 765, 854
MslI CAYNNNNRTG 2 cut(s) 1266, 1322
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 3 cut(s) 89, 232, 1157
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 3 cut(s) 89, 232, 1157
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 702, 828, 971, 1040
NdeII GATC 3 cut(s) 75, 187, 679
NlaIII CATG 9 cut(s) 109, 863, 898, 1040, 1057, 1142, 1193, 1241, 1258
NlaIV GGNNCC 4 cut(s) 249, 332, 519, 1162
NmuCI GTSAC 2 cut(s) 650, 1277
NsbI TGCGCA 2 cut(s) 950, 1035
NsiI ATGCAT 1 cut(s) 861
NspI RCATGY 3 cut(s) 1040, 1142, 1241
PciSI GCTCTTC 1 cut(s) 502
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 5 cut(s) 211, 368, 380, 398, 1106
PkrI GCNGC 8 cut(s) 695, 964, 1045, 1072, 1147, 1174, 1246, 1273
PleI GAGTC 6 cut(s) 183, 386, 398, 422, 428, 434
PpsI GAGTC 6 cut(s) 183, 386, 398, 422, 428, 434
PshBI ATTAAT 1 cut(s) 854
Psp6I CCWGG 3 cut(s) 87, 230, 1155
PspGI CCWGG 3 cut(s) 87, 230, 1155
PspN4I GGNNCC 4 cut(s) 249, 332, 519, 1162
PspPI GGNCC 2 cut(s) 709, 1258
PstI CTGCAG 4 cut(s) 824, 1048, 1150, 1249
PstNI CAGNNNCTG 5 cut(s) 365, 377, 389, 828, 1172
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 1266, 1322
SapI GCTCTTC 1 cut(s) 502
SaqAI TTAA 3 cut(s) 450, 765, 854
SatI GCNGC 8 cut(s) 694, 963, 1044, 1071, 1146, 1173, 1245, 1272
Sau3AI GATC 3 cut(s) 75, 187, 679
Sau96I GGNCC 2 cut(s) 709, 1258
ScaI AGTACT 1 cut(s) 587
SchI GAGTC 6 cut(s) 184, 386, 398, 422, 428, 434
ScrFI CCNGG 3 cut(s) 89, 232, 1157
SduI GDGCHC 5 cut(s) 1025, 1121, 1163, 1220, 1319
SfaNI GCATC 5 cut(s) 878, 949, 1057, 1159, 1258
SfcI CTRYAG 5 cut(s) 820, 936, 1044, 1146, 1245
SinI GGWCC 1 cut(s) 709
SmiMI CAYNNNNRTG 2 cut(s) 1266, 1322
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 2 cut(s) 472, 851
SsiI CCGC 1 cut(s) 38
SspMI CTAG 5 cut(s) 501, 540, 956, 1064, 1265
StyD4I CCNGG 3 cut(s) 87, 230, 1155
StyI CCWWGG 2 cut(s) 488, 712
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 2 cut(s) 948, 1284
TaqI TCGA 2 cut(s) 117, 209
TasI AATT 2 cut(s) 472, 851
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 5 cut(s) 211, 368, 380, 398, 1106
Tru1I TTAA 3 cut(s) 450, 765, 854
Tru9I TTAA 3 cut(s) 450, 765, 854
TscAI CASTG 2 cut(s) 370, 528
TseFI GTSAC 2 cut(s) 650, 1277
TseI GCWGC 8 cut(s) 693, 962, 1043, 1070, 1145, 1172, 1244, 1271
Tsp45I GTSAC 2 cut(s) 650, 1277
TspDTI ATGAA 2 cut(s) 657, 1178
TspRI CASTG 2 cut(s) 370, 528
VpaK11BI GGWCC 1 cut(s) 709
VspI ATTAAT 1 cut(s) 854
XapI RAATTY 1 cut(s) 472
XceI RCATGY 3 cut(s) 1040, 1142, 1241
XspI CTAG 5 cut(s) 501, 540, 956, 1064, 1265
ZrmI AGTACT 1 cut(s) 587
Zsp2I ATGCAT 1 cut(s) 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.