Rw0G013500

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00607
OG0016254
Physical Location & Seq
Reverse (-)
18389 .. 22265
3877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013500.1

Sequence Viewer

Length: 1314 bp
ATGGTGGTTCGGAGCGGAGCCGACGACGGAACCGCCGAGAATGGAAGCGCGGGGGTTTCCGACTACGAGAAAATCAGAGAGCAAAGGATCAAAGAGAACCTGGCCAGAATGCAGAACATGGGCATTTTCGACCTTTCACGCCAGCTCCACTCCTTCAAATCAAACCCTCCCAAACGCGCTCGCCGGAGTCCTCCTTCCGATCAGCCCAAAACCCACAACTCATTGCAGAATGTGGCTCCTGTAACCTATGTGGAAACTGTAAGGAAGGACTCAGTTGAACCAAAAAGAAGAGTAAGGAAGGCTTCTCAAAATGCAAGGAACCCCAATGGTGGGAAGAGAAGGACATCAGACACTGAATCAGAAACTGACTCAGAATCAGACTCAGCCTCAGACTTGGACTTTGACTCGGACTCTGACTCTGAGGTTAAAGTTCGCATACAGATATCAAATTCTGGGTCTCCACCAAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCAGTGAGTTATGTGGAAGCTAGTCCTAAAAAGGAGAAAGAGCTGTCAGAGAGTGTTGAAGGAGAGTACTTGGTGGATGACTATGGAGAAGATGGGAAGCGCATTGATGATGGGGTCAAGGATGAAACTTGTCACCAATGCAGGCAGAGAACTCTGGGTGATCTAACTCATTGCAGCAAATGTGGCTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTGGATATGAGATATGGAGAGAATGTGATTAAAGCCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGATATCTGTAACTGCAGTCTCTGCTTGAGTAGGAAGACACAGGAATTAATGCATGATGATATCAAAGAAGAAATGGAGGGATGCCTCATGGGGAAAGAGGTGAACTTCTTAGGTAGTGTGCTTGTTCCTACAGAAGACGTGTGCAAGCTAGATGCTGCTACTATTGCTTGTGATGTTGATGGTAAGACAAAGAAAGAACCAAAAAGGAACACGAGCACGATTAGTGCGCATGTTGCTGCAGAAGACATGGACAAGCTAGATGCTGCTGGTGATGTTGTTGATTGTGAGACAAATATAGAATCAAGAAGGAGCACGAGGACAAGTAGTTTGCATGTTGCTGCAGAAGACCTGGGCACCCCAGATGCTGCTGGTGATGTCGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGTAGTAGTGGGCATGTTGCTGCAGAAGACATGGGCCACCTAGATGCTGCTGGTGACGTTGGTGGTGAAAAAAAGAAACAACTAAGAAGGAGCACAAGGATGAGGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

437

Amino Acids

48.17

Weight (kDa)

5.81

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 205 - 278 2.6e-26 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1011
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 2 cut(s) 50, 177
AciI CCGC 3 cut(s) 15, 33, 50
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 1 cut(s) 448
AfaI GTAC 1 cut(s) 563
AfiI CCNNNNNNNGG 2 cut(s) 329, 330
AflIII ACRYGT 1 cut(s) 921
AgsI TTSAA 3 cut(s) 157, 278, 554
AjiI CACGTC 1 cut(s) 922
AjnI CCWGG 2 cut(s) 99, 1131
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 5 cut(s) 145, 515, 538, 931, 1039
AluI AGCT 5 cut(s) 145, 515, 538, 931, 1039
Alw21I GWGCWC 4 cut(s) 1001, 1097, 1196, 1295
Alw26I GTCTC 4 cut(s) 462, 806, 1064, 1166
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 4 cut(s) 353, 365, 804, 1148
AoxI GGCC 2 cut(s) 102, 1234
ApeKI GCWGC 8 cut(s) 669, 938, 1019, 1046, 1121, 1148, 1220, 1247
ApoI RAATTY 1 cut(s) 448
ArsI GACNNNNNNTTYG 6 cut(s) 383, 415, 440, 472, 1093, 1125
AseI ATTAAT 1 cut(s) 830
AspLEI GCGC 5 cut(s) 50, 179, 471, 597, 1012
AspS9I GGNCC 2 cut(s) 685, 1234
AsuHPI GGTGA 8 cut(s) 620, 665, 895, 1064, 1166, 1181, 1265, 1277
AvaII GGWCC 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 1139
BalI TGGCCA 1 cut(s) 104
BanI GGYRCC 1 cut(s) 1136
BauI CACGAG 2 cut(s) 994, 1096
BbsI GAAGAC 5 cut(s) 824, 924, 1032, 1134, 1233
Bbv12I GWGCWC 4 cut(s) 1001, 1097, 1196, 1295
BbvI GCAGC 8 cut(s) 681, 925, 1006, 1033, 1108, 1135, 1207, 1234
BccI CCATC 3 cut(s) 581, 599, 956
BciT130I CCWGG 2 cut(s) 101, 1133
BcoDI GTCTC 4 cut(s) 462, 806, 1064, 1166
BfaI CTAG 5 cut(s) 477, 516, 932, 1040, 1241
BfmI CTRYAG 5 cut(s) 796, 912, 1020, 1122, 1221
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 8 cut(s) 670, 939, 1020, 1047, 1122, 1149, 1221, 1248
BlsI GCNGC 8 cut(s) 671, 940, 1021, 1048, 1123, 1150, 1222, 1249
BmcAI AGTACT 1 cut(s) 563
Bme1390I CCNGG 2 cut(s) 101, 1133
Bme18I GGWCC 1 cut(s) 685
BmgBI CACGTC 1 cut(s) 922
BmgT120I GGNCC 2 cut(s) 685, 1234
BmiI GGNNCC 6 cut(s) 19, 31, 237, 320, 495, 1138
BmrFI CCNGG 2 cut(s) 101, 1133
BmsI GCATC 5 cut(s) 854, 925, 1033, 1135, 1234
BpiI GAAGAC 5 cut(s) 824, 924, 1032, 1134, 1233
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 829
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 464, 688, 1132
BsaXI ACNNNNNCTCC 6 cut(s) 129, 159, 720, 750, 1192, 1222
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 330
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 221, 664
BseBI CCWGG 2 cut(s) 101, 1133
BseDI CCNNGG 3 cut(s) 464, 688, 1132
BseGI GGATG 4 cut(s) 577, 622, 869, 1305
BseLI CCNNNNNNNGG 2 cut(s) 329, 330
BseMI GCAATG 2 cut(s) 221, 664
BseMII CTCAG 5 cut(s) 285, 384, 396, 402, 411
BseNI ACTGG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 1139
BseXI GCAGC 8 cut(s) 681, 925, 1006, 1033, 1108, 1135, 1207, 1234
Bsh1236I CGCG 2 cut(s) 50, 177
BshFI GGCC 2 cut(s) 104, 1236
BshNI GGYRCC 1 cut(s) 1136
BsiHKAI GWGCWC 4 cut(s) 1001, 1097, 1196, 1295
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 329, 330
BsmAI GTCTC 4 cut(s) 462, 806, 1064, 1166
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 104, 1236
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 5 cut(s) 1001, 1097, 1139, 1196, 1295
Bsp143I GATC 3 cut(s) 87, 199, 655
BspACI CCGC 3 cut(s) 15, 33, 50
BspANI GGCC 2 cut(s) 104, 1236
BspCNI CTCAG 5 cut(s) 284, 383, 395, 401, 412
BspFNI CGCG 2 cut(s) 50, 177
BspLI GGNNCC 6 cut(s) 19, 31, 237, 320, 495, 1138
BspMAI CTGCAG 4 cut(s) 800, 1024, 1126, 1225
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 478
BspT107I GGYRCC 1 cut(s) 1136
BspTNI GGTCTC 1 cut(s) 462
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 2 cut(s) 221, 664
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 464, 688, 1132
BssMI GATC 3 cut(s) 87, 199, 655
BssSI CACGAG 2 cut(s) 994, 1096
BssT1I CCWWGG 2 cut(s) 464, 688
Bst2BI CACGAG 2 cut(s) 994, 1096
Bst2UI CCWGG 2 cut(s) 101, 1133
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 3 cut(s) 283, 329, 478
BstAPI GCANNNNNTGC 1 cut(s) 804
BstC8I GCNNGC 4 cut(s) 143, 181, 638, 929
BstDEI CTNAG 7 cut(s) 271, 370, 382, 388, 420, 892, 1283
BstF5I GGATG 4 cut(s) 577, 622, 869, 1305
BstFNI CGCG 2 cut(s) 50, 177
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 5 cut(s) 50, 179, 471, 597, 1012
BstKTI GATC 3 cut(s) 90, 202, 658
BstMAI GTCTC 4 cut(s) 462, 806, 1064, 1166
BstMBI GATC 3 cut(s) 87, 199, 655
BstMWI GCNNNNNNNGC 4 cut(s) 678, 804, 947, 1016
BstNI CCWGG 2 cut(s) 101, 1133
BstNSI RCATGY 3 cut(s) 1016, 1118, 1217
BstSCI CCNGG 2 cut(s) 99, 1131
BstSFI CTRYAG 5 cut(s) 796, 912, 1020, 1122, 1221
BstSLI GKGCMC 1 cut(s) 1139
BstUI CGCG 2 cut(s) 50, 177
BstV1I GCAGC 8 cut(s) 681, 925, 1006, 1033, 1108, 1135, 1207, 1234
BstV2I GAAGAC 5 cut(s) 824, 924, 1032, 1134, 1233
BsuRI GGCC 2 cut(s) 104, 1236
BtrI CACGTC 1 cut(s) 922
BtsCI GGATG 4 cut(s) 577, 622, 869, 1305
BtsIMutI CAGTG 2 cut(s) 351, 504
Cac8I GCNNGC 4 cut(s) 143, 181, 638, 929
CaiI CAGNNNCTG 4 cut(s) 353, 365, 804, 1148
CfoI GCGC 5 cut(s) 50, 179, 471, 597, 1012
Cfr13I GGNCC 2 cut(s) 685, 1234
Csp6I GTAC 1 cut(s) 562
CviAII CATG 9 cut(s) 118, 836, 871, 1013, 1030, 1115, 1166, 1214, 1231
CviQI GTAC 1 cut(s) 562
DdeI CTNAG 7 cut(s) 271, 370, 382, 388, 420, 892, 1283
DpnI GATC 3 cut(s) 89, 201, 657
DpnII GATC 3 cut(s) 87, 199, 655
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 3 cut(s) 283, 329, 478
EarI CTCTTC 3 cut(s) 283, 329, 478
Eco130I CCWWGG 2 cut(s) 464, 688
Eco31I GGTCTC 1 cut(s) 462
Eco32I GATATC 3 cut(s) 444, 787, 844
Eco47I GGWCC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 99, 1131
EcoRV GATATC 3 cut(s) 444, 787, 844
EcoT14I CCWWGG 2 cut(s) 464, 688
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 464, 688
FaeI CATG 9 cut(s) 121, 839, 874, 1016, 1033, 1118, 1169, 1217, 1234
FalI AAGNNNNNCTT 4 cut(s) 286, 318, 457, 489
FatI CATG 9 cut(s) 117, 835, 870, 1012, 1029, 1114, 1165, 1213, 1230
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 8 cut(s) 670, 939, 1020, 1047, 1122, 1149, 1221, 1248
FokI GGATG 3 cut(s) 584, 629, 876
Fsp4HI GCNGC 8 cut(s) 670, 939, 1020, 1047, 1122, 1149, 1221, 1248
FspAI RTGCGCAY 1 cut(s) 1011
FspBI CTAG 5 cut(s) 477, 516, 932, 1040, 1241
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 5 cut(s) 49, 178, 470, 596, 1011
GluI GCNGC 8 cut(s) 670, 939, 1020, 1047, 1122, 1149, 1221, 1248
GsuI CTGGAG 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 2 cut(s) 104, 1236
HapII CCGG 1 cut(s) 184
HhaI GCGC 5 cut(s) 50, 179, 471, 597, 1012
Hin1II CATG 9 cut(s) 121, 839, 874, 1016, 1033, 1118, 1169, 1217, 1234
Hin6I GCGC 5 cut(s) 48, 177, 469, 595, 1010
HinP1I GCGC 5 cut(s) 48, 177, 469, 595, 1010
HpaII CCGG 1 cut(s) 184
HphI GGTGA 8 cut(s) 620, 665, 895, 1064, 1166, 1181, 1265, 1277
Hpy166II GTNNAC 1 cut(s) 886
Hpy188III TCNNGA 3 cut(s) 758, 782, 1086
Hpy8I GTNNAC 1 cut(s) 886
Hpy99I CGWCG 2 cut(s) 26, 29
HpyAV CCTTC 9 cut(s) 163, 204, 259, 292, 333, 548, 1083, 1182, 1281
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 2 cut(s) 921, 1257
HpyF10VI GCNNNNNNNGC 4 cut(s) 678, 804, 947, 1016
HpyF3I CTNAG 7 cut(s) 271, 370, 382, 388, 420, 892, 1283
HpySE526I ACGT 2 cut(s) 921, 1257
Hsp92II CATG 9 cut(s) 121, 839, 874, 1016, 1033, 1118, 1169, 1217, 1234
HspAI GCGC 5 cut(s) 48, 177, 469, 595, 1010
Kzo9I GATC 3 cut(s) 87, 199, 655
LguI GCTCTTC 1 cut(s) 478
LmnI GCTCC 8 cut(s) 12, 17, 150, 241, 499, 1092, 1191, 1290
Lsp1109I GCAGC 8 cut(s) 681, 925, 1006, 1033, 1108, 1135, 1207, 1234
LweI GCATC 5 cut(s) 854, 925, 1033, 1135, 1234
MaeI CTAG 5 cut(s) 477, 516, 932, 1040, 1241
MaeII ACGT 2 cut(s) 921, 1257
MaeIII GTNAC 4 cut(s) 241, 626, 791, 1253
MalI GATC 3 cut(s) 89, 201, 657
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 87, 199, 655
MhlI GDGCHC 5 cut(s) 1001, 1097, 1139, 1196, 1295
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 2 cut(s) 448, 827
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 7 cut(s) 196, 263, 362, 374, 398, 404, 410
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 837
MscI TGGCCA 1 cut(s) 104
MseI TTAA 3 cut(s) 426, 741, 830
MslI CAYNNNNRTG 2 cut(s) 1242, 1298
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 2 cut(s) 101, 1133
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 101, 1133
MvnI CGCG 2 cut(s) 50, 177
MwoI GCNNNNNNNGC 4 cut(s) 678, 804, 947, 1016
NdeII GATC 3 cut(s) 87, 199, 655
NlaIII CATG 9 cut(s) 121, 839, 874, 1016, 1033, 1118, 1169, 1217, 1234
NlaIV GGNNCC 6 cut(s) 19, 31, 237, 320, 495, 1138
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 626, 1253
NsbI TGCGCA 1 cut(s) 1011
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 3 cut(s) 1016, 1118, 1217
PciSI GCTCTTC 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 3 cut(s) 356, 374, 1082
PkrI GCNGC 8 cut(s) 671, 940, 1021, 1048, 1123, 1150, 1222, 1249
PleI GAGTC 7 cut(s) 195, 263, 362, 374, 398, 404, 410
PpsI GAGTC 7 cut(s) 195, 263, 362, 374, 398, 404, 410
PshBI ATTAAT 1 cut(s) 830
Psp6I CCWGG 2 cut(s) 99, 1131
PspGI CCWGG 2 cut(s) 99, 1131
PspN4I GGNNCC 6 cut(s) 19, 31, 237, 320, 495, 1138
PspPI GGNCC 2 cut(s) 685, 1234
PstI CTGCAG 4 cut(s) 800, 1024, 1126, 1225
PstNI CAGNNNCTG 4 cut(s) 353, 365, 804, 1148
RsaI GTAC 1 cut(s) 563
RsaNI GTAC 1 cut(s) 562
RseI CAYNNNNRTG 2 cut(s) 1242, 1298
SapI GCTCTTC 1 cut(s) 478
SaqAI TTAA 3 cut(s) 426, 741, 830
SatI GCNGC 8 cut(s) 670, 939, 1020, 1047, 1122, 1149, 1221, 1248
Sau3AI GATC 3 cut(s) 87, 199, 655
Sau96I GGNCC 2 cut(s) 685, 1234
ScaI AGTACT 1 cut(s) 563
SchI GAGTC 7 cut(s) 196, 263, 362, 374, 398, 404, 410
ScrFI CCNGG 2 cut(s) 101, 1133
SduI GDGCHC 5 cut(s) 1001, 1097, 1139, 1196, 1295
SfaNI GCATC 5 cut(s) 854, 925, 1033, 1135, 1234
SfcI CTRYAG 5 cut(s) 796, 912, 1020, 1122, 1221
SinI GGWCC 1 cut(s) 685
SmiMI CAYNNNNRTG 2 cut(s) 1242, 1298
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 2 cut(s) 448, 827
SsiI CCGC 3 cut(s) 15, 33, 50
SspMI CTAG 5 cut(s) 477, 516, 932, 1040, 1241
StyD4I CCNGG 2 cut(s) 99, 1131
StyI CCWWGG 2 cut(s) 464, 688
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 2 cut(s) 924, 1260
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 448, 827
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 3 cut(s) 356, 374, 1082
Tru1I TTAA 3 cut(s) 426, 741, 830
Tru9I TTAA 3 cut(s) 426, 741, 830
TscAI CASTG 2 cut(s) 358, 504
TseFI GTSAC 2 cut(s) 626, 1253
TseI GCWGC 8 cut(s) 669, 938, 1019, 1046, 1121, 1148, 1220, 1247
Tsp45I GTSAC 2 cut(s) 626, 1253
TspDTI ATGAA 2 cut(s) 633, 1154
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 358, 504
VpaK11BI GGWCC 1 cut(s) 685
VspI ATTAAT 1 cut(s) 830
XapI RAATTY 1 cut(s) 448
XceI RCATGY 3 cut(s) 1016, 1118, 1217
XspI CTAG 5 cut(s) 477, 516, 932, 1040, 1241
ZrmI AGTACT 1 cut(s) 563
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.