Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002130.1

Orthogroup ID

OG0016254

Physical Location & Seq

Genomic Coordinates Reverse (-)

55663 .. 59541

Gene Structure 3879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002130.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggtggttcggagcggagccgacgacggagccgccgagaatggaagcgcgggggtttccgactacgagaaaatcagagagcaaaggatcaaagagaacctggccagaatgcagaacatgggcattttcgacctttcacgccagctccactccttcaaaccaaaccctcccaaacgcgctcgccggagtcctccttccgatcagcccaaaacccacaactcagttcccacaagacgctcctccaggttgcagaatgtggctcctgtaacctatgtggaaactgtaaggaaggactcagttgaaccaaaaagaagagtaaggaaggcttctcaaaatgcaaggaaccccaatggtgggaagagaaggacatcagacactgaatcagaaactgactcagaatcagactcagcctcagacttggactttgactcggactctgactctgaggttaaagttcgcatacagatatcaaattctgggtctccaccaaggcgctcttctagattgagagatgtggctccagtgagttatgtggaagctagtcctaaaaaggagaaagagctgtcagagagtgttgaaggagagtacttggtggatgactatggggaagatgggaagcgcattgatgatggggtcaaggatgaaacttgtcaccaatgcagatatggagagaatgtgattaaagccaaccaaaatcctgattgggtttgccctgtttgtcgggatatctgtaactgcagtctctgcttgagtaggaagacacaggaattaatgcatgatgatatcaaagaagaaatggagggatgcctcatggggaaagaggtgaacttcttaggtagtgtgcttgttcctacagaagacgtgcgcaagctagatgctgctactattgcttgtgatgttgatggtaagacaaagaaagaaccaaaaaggaacacgagcacgattagtgcgcatgttgctgcagaagacatggacaagctagatgctgctggtgatgttgttgattgtgagacaaatatagaatcaagaaggagcatgaggacaagtagtttgcatgttgctgcagaagacctgggcaccccagatgctgctggtgatgtggttcatggtgagacaaagcaaccaaggagcacaaggaggagtagtgggcatgttgctgtagaagacatgggccacctagatgctgctggtgacgttgatggtgaaaaaaagaaacaactaagaaggagcacaaggatgagggggaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-4CXXC_R1

Protein Analysis

416

Amino Acids

46.0

Weight (kDa)

5.96

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016254)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g07210
rosa_chinensis	RchiOBHm_Chr6g0259731
rosa_laevigata	RLG00000014513
rosa_multiflora	Rmu_sc0002130.1_g000010 Rmu_sc0015614.1_g000003
rosa_roxburghii	Rroxscaffold_7G00206990 Rroxscaffold_7G00207100
rosa_rugosa	Rorug05G0590300 Rorug05G0590300
rosa_samantha	Rh6AG106600 Rh6BG101900 Rh6CG095600 Rh6DG089500
rosa_wichuraiana	Rw0G013500 Rw6G009230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	866, 951
AccB1I	GGYRCC	1 cut(s)	1076
AccBSI	CCGCTC	1 cut(s)	15
AccII	CGCG	2 cut(s)	50, 177
AciI	CCGC	3 cut(s)	15, 33, 50
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	2 cut(s)	353, 354
AgsI	TTSAA	3 cut(s)	157, 302, 578
AjiI	CACGTC	1 cut(s)	862
AjnI	CCWGG	3 cut(s)	99, 242, 1071
AjuI	GAANNNNNNNTTGG	2 cut(s)	481, 513
AluBI	AGCT	5 cut(s)	145, 539, 562, 871, 979
AluI	AGCT	5 cut(s)	145, 539, 562, 871, 979
Alw21I	GWGCWC	3 cut(s)	941, 1133, 1232
Alw26I	GTCTC	4 cut(s)	486, 746, 1004, 1106
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	4 cut(s)	377, 389, 744, 1088
AoxI	GGCC	2 cut(s)	102, 1171
ApeKI	GCWGC	6 cut(s)	878, 959, 986, 1061, 1088, 1184
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	6 cut(s)	407, 439, 464, 496, 1033, 1065
AseI	ATTAAT	1 cut(s)	770
AspLEI	GCGC	6 cut(s)	50, 179, 495, 621, 867, 952
AspS9I	GGNCC	1 cut(s)	1171
AsuHPI	GGTGA	7 cut(s)	644, 835, 1004, 1106, 1121, 1202, 1214
BaeGI	GKGCMC	1 cut(s)	1079
BalI	TGGCCA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	1076
BauI	CACGAG	1 cut(s)	934
BbsI	GAAGAC	5 cut(s)	764, 864, 972, 1074, 1170
Bbv12I	GWGCWC	3 cut(s)	941, 1133, 1232
BbvI	GCAGC	6 cut(s)	865, 946, 973, 1048, 1075, 1171
BccI	CCATC	4 cut(s)	605, 623, 896, 1193
BciT130I	CCWGG	3 cut(s)	101, 244, 1073
BcoDI	GTCTC	4 cut(s)	486, 746, 1004, 1106
BfaI	CTAG	5 cut(s)	501, 540, 872, 980, 1178
BfmI	CTRYAG	5 cut(s)	736, 852, 960, 1062, 1158
BfoI	RGCGCY	1 cut(s)	496
BisI	GCNGC	7 cut(s)	33, 879, 960, 987, 1062, 1089, 1185
BlsI	GCNGC	7 cut(s)	34, 880, 961, 988, 1063, 1090, 1186
BmcAI	AGTACT	1 cut(s)	587
Bme1390I	CCNGG	3 cut(s)	101, 244, 1073
BmgBI	CACGTC	1 cut(s)	862
BmgT120I	GGNCC	1 cut(s)	1171
BmiI	GGNNCC	6 cut(s)	19, 31, 261, 344, 519, 1078
BmrFI	CCNGG	3 cut(s)	101, 244, 1073
BmsI	GCATC	5 cut(s)	794, 865, 973, 1075, 1171
BpiI	GAAGAC	5 cut(s)	764, 864, 972, 1074, 1170
BpmI	CTGGAG	2 cut(s)	226, 504
BpuEI	CTTGAG	1 cut(s)	769
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	3 cut(s)	488, 1072, 1124
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 660, 690, 1129, 1159
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 354
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	3 cut(s)	101, 244, 1073
BseDI	CCNNGG	3 cut(s)	488, 1072, 1124
BseGI	GGATG	4 cut(s)	601, 646, 809, 1242
BseLI	CCNNNNNNNGG	2 cut(s)	353, 354
BseMII	CTCAG	6 cut(s)	234, 309, 408, 420, 426, 435
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	229, 1153
BseSI	GKGCMC	1 cut(s)	1079
BseXI	GCAGC	6 cut(s)	865, 946, 973, 1048, 1075, 1171
Bsh1236I	CGCG	2 cut(s)	50, 177
BshFI	GGCC	2 cut(s)	104, 1173
BshNI	GGYRCC	1 cut(s)	1076
BsiHKAI	GWGCWC	3 cut(s)	941, 1133, 1232
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	353, 354
BsmAI	GTCTC	4 cut(s)	486, 746, 1004, 1106
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	104, 1173
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	4 cut(s)	941, 1079, 1133, 1232
Bsp143I	GATC	2 cut(s)	87, 199
BspACI	CCGC	3 cut(s)	15, 33, 50
BspANI	GGCC	2 cut(s)	104, 1173
BspCNI	CTCAG	6 cut(s)	233, 308, 407, 419, 425, 436
BspFNI	CGCG	2 cut(s)	50, 177
BspLI	GGNNCC	6 cut(s)	19, 31, 261, 344, 519, 1078
BspMAI	CTGCAG	3 cut(s)	740, 964, 1066
BspPI	GGATC	1 cut(s)	95
BspQI	GCTCTTC	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	1076
BspTNI	GGTCTC	1 cut(s)	486
BsrBI	CCGCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	3 cut(s)	488, 1072, 1124
BssMI	GATC	2 cut(s)	87, 199
BssSI	CACGAG	1 cut(s)	934
BssT1I	CCWWGG	2 cut(s)	488, 1124
Bst2BI	CACGAG	1 cut(s)	934
Bst2UI	CCWGG	3 cut(s)	101, 244, 1073
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	3 cut(s)	307, 353, 502
BstAPI	GCANNNNNTGC	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	143, 181, 869
BstDEI	CTNAG	8 cut(s)	220, 295, 394, 406, 412, 444, 832, 1220
BstF5I	GGATG	4 cut(s)	601, 646, 809, 1242
BstFNI	CGCG	2 cut(s)	50, 177
BstH2I	RGCGCY	1 cut(s)	496
BstHHI	GCGC	6 cut(s)	50, 179, 495, 621, 867, 952
BstKTI	GATC	2 cut(s)	90, 202
BstMAI	GTCTC	4 cut(s)	486, 746, 1004, 1106
BstMBI	GATC	2 cut(s)	87, 199
BstMWI	GCNNNNNNNGC	3 cut(s)	744, 887, 956
BstNI	CCWGG	3 cut(s)	101, 244, 1073
BstNSI	RCATGY	3 cut(s)	956, 1058, 1154
BstSCI	CCNGG	3 cut(s)	99, 242, 1071
BstSFI	CTRYAG	5 cut(s)	736, 852, 960, 1062, 1158
BstSLI	GKGCMC	1 cut(s)	1079
BstUI	CGCG	2 cut(s)	50, 177
BstV1I	GCAGC	6 cut(s)	865, 946, 973, 1048, 1075, 1171
BstV2I	GAAGAC	5 cut(s)	764, 864, 972, 1074, 1170
BsuRI	GGCC	2 cut(s)	104, 1173
BtrI	CACGTC	1 cut(s)	862
BtsCI	GGATG	4 cut(s)	601, 646, 809, 1242
BtsIMutI	CAGTG	2 cut(s)	375, 528
Cac8I	GCNNGC	3 cut(s)	143, 181, 869
CaiI	CAGNNNCTG	4 cut(s)	377, 389, 744, 1088
CfoI	GCGC	6 cut(s)	50, 179, 495, 621, 867, 952
Cfr13I	GGNCC	1 cut(s)	1171
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	586
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	8 cut(s)	220, 295, 394, 406, 412, 444, 832, 1220
DpnI	GATC	2 cut(s)	89, 201
DpnII	GATC	2 cut(s)	87, 199
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	3 cut(s)	307, 353, 502
EarI	CTCTTC	3 cut(s)	307, 353, 502
Eco130I	CCWWGG	2 cut(s)	488, 1124
Eco31I	GGTCTC	1 cut(s)	486
Eco32I	GATATC	3 cut(s)	468, 727, 784
EcoRII	CCWGG	3 cut(s)	99, 242, 1071
EcoRV	GATATC	3 cut(s)	468, 727, 784
EcoT14I	CCWWGG	2 cut(s)	488, 1124
EcoT22I	ATGCAT	1 cut(s)	777
ErhI	CCWWGG	2 cut(s)	488, 1124
FalI	AAGNNNNNCTT	4 cut(s)	310, 342, 481, 513
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	7 cut(s)	33, 879, 960, 987, 1062, 1089, 1185
FokI	GGATG	3 cut(s)	608, 653, 816
Fsp4HI	GCNGC	7 cut(s)	33, 879, 960, 987, 1062, 1089, 1185
FspAI	RTGCGCAY	1 cut(s)	951
FspBI	CTAG	5 cut(s)	501, 540, 872, 980, 1178
FspI	TGCGCA	2 cut(s)	866, 951
GlaI	GCGC	6 cut(s)	49, 178, 494, 620, 866, 951
GluI	GCNGC	7 cut(s)	33, 879, 960, 987, 1062, 1089, 1185
GsuI	CTGGAG	2 cut(s)	226, 504
HaeII	RGCGCY	1 cut(s)	496
HaeIII	GGCC	2 cut(s)	104, 1173
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	6 cut(s)	50, 179, 495, 621, 867, 952
Hin6I	GCGC	6 cut(s)	48, 177, 493, 619, 865, 950
HinP1I	GCGC	6 cut(s)	48, 177, 493, 619, 865, 950
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	7 cut(s)	644, 835, 1004, 1106, 1121, 1202, 1214
Hpy166II	GTNNAC	1 cut(s)	826
Hpy188III	TCNNGA	4 cut(s)	501, 698, 722, 1026
Hpy8I	GTNNAC	1 cut(s)	826
Hpy99I	CGWCG	2 cut(s)	26, 29
HpyAV	CCTTC	8 cut(s)	163, 204, 283, 316, 357, 572, 1023, 1218
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	861, 1194
HpyCH4V	TGCA	9 cut(s)	112, 250, 338, 660, 738, 775, 962, 1054, 1064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	744, 887, 956
HpyF3I	CTNAG	8 cut(s)	220, 295, 394, 406, 412, 444, 832, 1220
HpySE526I	ACGT	2 cut(s)	861, 1194
HspAI	GCGC	6 cut(s)	48, 177, 493, 619, 865, 950
Kzo9I	GATC	2 cut(s)	87, 199
LguI	GCTCTTC	1 cut(s)	502
Lsp1109I	GCAGC	6 cut(s)	865, 946, 973, 1048, 1075, 1171
LweI	GCATC	5 cut(s)	794, 865, 973, 1075, 1171
MaeI	CTAG	5 cut(s)	501, 540, 872, 980, 1178
MaeII	ACGT	2 cut(s)	861, 1194
MaeIII	GTNAC	4 cut(s)	265, 650, 731, 1190
MalI	GATC	2 cut(s)	89, 201
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	2 cut(s)	87, 199
MhlI	GDGCHC	4 cut(s)	941, 1079, 1133, 1232
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	472, 767
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	7 cut(s)	196, 287, 386, 398, 422, 428, 434
MmeI	TCCRAC	1 cut(s)	84
Mox20I	TGGCCA	1 cut(s)	104
Mph1103I	ATGCAT	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	450, 681, 770
MslI	CAYNNNNRTG	2 cut(s)	1179, 1235
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	3 cut(s)	101, 244, 1073
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	101, 244, 1073
MvnI	CGCG	2 cut(s)	50, 177
MwoI	GCNNNNNNNGC	3 cut(s)	744, 887, 956
NdeII	GATC	2 cut(s)	87, 199
NlaIV	GGNNCC	6 cut(s)	19, 31, 261, 344, 519, 1078
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	650, 1190
NsbI	TGCGCA	2 cut(s)	866, 951
NsiI	ATGCAT	1 cut(s)	777
NspI	RCATGY	3 cut(s)	956, 1058, 1154
PciSI	GCTCTTC	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	380, 398, 1022
PkrI	GCNGC	7 cut(s)	34, 880, 961, 988, 1063, 1090, 1186
PleI	GAGTC	7 cut(s)	195, 287, 386, 398, 422, 428, 434
PpsI	GAGTC	7 cut(s)	195, 287, 386, 398, 422, 428, 434
PshBI	ATTAAT	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	99, 242, 1071
PspGI	CCWGG	3 cut(s)	99, 242, 1071
PspN4I	GGNNCC	6 cut(s)	19, 31, 261, 344, 519, 1078
PspPI	GGNCC	1 cut(s)	1171
PstI	CTGCAG	3 cut(s)	740, 964, 1066
PstNI	CAGNNNCTG	4 cut(s)	377, 389, 744, 1088
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	2 cut(s)	1179, 1235
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	450, 681, 770
SatI	GCNGC	7 cut(s)	33, 879, 960, 987, 1062, 1089, 1185
Sau3AI	GATC	2 cut(s)	87, 199
Sau96I	GGNCC	1 cut(s)	1171
ScaI	AGTACT	1 cut(s)	587
SchI	GAGTC	7 cut(s)	196, 287, 386, 398, 422, 428, 434
ScrFI	CCNGG	3 cut(s)	101, 244, 1073
SduI	GDGCHC	4 cut(s)	941, 1079, 1133, 1232
SfaNI	GCATC	5 cut(s)	794, 865, 973, 1075, 1171
SfcI	CTRYAG	5 cut(s)	736, 852, 960, 1062, 1158
SmiMI	CAYNNNNRTG	2 cut(s)	1179, 1235
SmlI	CTYRAG	1 cut(s)	748
SmoI	CTYRAG	1 cut(s)	748
Sse9I	AATT	2 cut(s)	472, 767
SsiI	CCGC	3 cut(s)	15, 33, 50
SspMI	CTAG	5 cut(s)	501, 540, 872, 980, 1178
StyD4I	CCNGG	3 cut(s)	99, 242, 1071
StyI	CCWWGG	2 cut(s)	488, 1124
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	864, 1197
TaqI	TCGA	1 cut(s)	129
TasI	AATT	2 cut(s)	472, 767
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	3 cut(s)	380, 398, 1022
Tru1I	TTAA	3 cut(s)	450, 681, 770
Tru9I	TTAA	3 cut(s)	450, 681, 770
TscAI	CASTG	2 cut(s)	382, 528
TseFI	GTSAC	2 cut(s)	650, 1190
TseI	GCWGC	6 cut(s)	878, 959, 986, 1061, 1088, 1184
Tsp45I	GTSAC	2 cut(s)	650, 1190
TspDTI	ATGAA	2 cut(s)	657, 1094
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	382, 528
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	500
XceI	RCATGY	3 cut(s)	956, 1058, 1154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XspI	CTAG	5 cut(s)	501, 540, 872, 980, 1178
ZrmI	AGTACT	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.