Rroxscaffold_7G00207100

Cell division cycle-associated 7-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016254
Physical Location & Seq
Forward (+)
56981460 .. 56985451
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207100.1

Sequence Viewer

Length: 1296 bp
ATGGTGGTCCGGAGCGGAGCCGACGACGGAACCGCCGAGAACGGAAGCGCGGGGGTTTCCGACTACGAGAAAATCAGAGAGCAAAGGATCAAAGAGAACCTGGCCAGAATGCAGAACATGGGCATTTTCGACCTTTCACGCCAGCTCCACTCCTTCAAACCTAACCCTCCCAAACGCGCTCGCCGGAGTCCTCCTTCCGATCAGCCCAAAACCCCACAACTCAGTTCCCACAAGACGCTCCTCCAGAGTAGGAAAATTACAAGGTTGCAGAATGTGGCTCCTGTAACCTATGTGGAAACTGTAAGGAAGGTCTCAGTTGAACCAAGAAGAAGAATTTTAAATTCTGGGTCTCCACCAAGGCGCTCTTCTAGGTTGAGAGATGTGGCTCCAGTGAGTTATGTGGAAGCTAGTCCTAAAAAGGAGAAAGAGCTGTCAGACAGTGTTGAAGGAGAGTACTTGGTGGATGACTATGGAGAAGATGGGAAGCGCATTGATGATGGGGTCAAGGATGAAACTTGTCACCAATGCAGGCAGAGAACTCTTGGTGATCTGACTCATTGCAACAAATGTGAGTTGGTCCAAGGGCAGTTTTGTGGAGATTGCTTGGATATGAGATATGGAGAGAATGTGATGAAAACCAACCAAAATCCTGATTGGGTTTGCCCTGTTTGTCGGGGTATCTGTAACTGCAGTCTCTGCTTGAGTAGGAAGGAATTAATGCATGATGATATCAAAGAAGAACTGGAGGGATGCCTCATGGGGAAAGAGGTGAACTTCTTAGGTAGTGAGCATGTTCCTACAGAAGACGTGTGCAAGCTAGATGCTGCTACTATTGCTTGTGATGTTGATGGTAAGACCAAGAAAGAACCAAAAGGGAGCACGAGCACGGTTAGTGCGCATGTTGCTGCAGAAGACATGGACAAGCTAGATGCTGCTGGTGATGCTGTTGATGGTGAGACAAATTTAGAACCAAGGAGCACGAGGACAAGCAGTTCGCATGTTGCTGCAGAAGACCTGGGCAACCCAGATGCTGCTGGTGATGCTGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGAAGTAGTGGGCATGTTGCTGCAGAAGATATGGGCCACCTAGATGCTGCTGGTGACGCTGTTCATGGTGAGACAAAGCAACCAAGAAGGAGCACAAGGAGAAGTAGTGGGCATGTTGCTGCAGAAGACATGGGCCACCTAGATGCTGCTGGTGACGTTGATGATGAAAAAAAGAAACAACTAAGAAGGAGCACAAGGATGAGGGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-4CXXC_R1

Protein Analysis

431

Amino Acids

47.43

Weight (kDa)

6.42

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-4CXXC_R1 PF10497 169 - 240 9.5e-27 Zinc-finger domain of monoamine-oxidase A repressor R1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 897
AccBSI CCGCTC 1 cut(s) 15
AccII CGCG 2 cut(s) 50, 177
AccIII TCCGGA 1 cut(s) 9
AciI CCGC 3 cut(s) 15, 33, 50
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 102
AcsI RAATTY 3 cut(s) 333, 340, 961
AfaI GTAC 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 807
AgsI TTSAA 3 cut(s) 157, 320, 446
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 2 cut(s) 99, 1014
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AloI GAACNNNNNNTCC 2 cut(s) 976, 1008
AluBI AGCT 5 cut(s) 145, 407, 430, 817, 925
AluI AGCT 5 cut(s) 145, 407, 430, 817, 925
Alw21I GWGCWC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
Alw26I GTCTC 6 cut(s) 316, 354, 698, 950, 1049, 1148
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 2 cut(s) 696, 1031
Aor13HI TCCGGA 1 cut(s) 9
AoxI GGCC 3 cut(s) 102, 1117, 1216
ApeKI GCWGC 9 cut(s) 824, 905, 932, 1004, 1031, 1103, 1130, 1202, 1229
ApoI RAATTY 3 cut(s) 333, 340, 961
ArsI GACNNNNNNTTYG 2 cut(s) 976, 1008
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 5 cut(s) 50, 179, 363, 489, 898
AspS9I GGNCC 4 cut(s) 7, 577, 1117, 1216
AvaII GGWCC 2 cut(s) 7, 577
BalI TGGCCA 1 cut(s) 104
BauI CACGAG 2 cut(s) 880, 979
BbsI GAAGAC 4 cut(s) 810, 918, 1017, 1215
Bbv12I GWGCWC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
BbvI GCAGC 9 cut(s) 811, 892, 919, 991, 1018, 1090, 1117, 1189, 1216
BccI CCATC 4 cut(s) 473, 491, 842, 944
BciT130I CCWGG 2 cut(s) 101, 1016
BcoDI GTCTC 6 cut(s) 316, 354, 698, 950, 1049, 1148
BfaI CTAG 6 cut(s) 369, 408, 818, 926, 1124, 1223
BfmI CTRYAG 6 cut(s) 688, 798, 906, 1005, 1104, 1203
BfoI RGCGCY 1 cut(s) 364
BisI GCNGC 9 cut(s) 825, 906, 933, 1005, 1032, 1104, 1131, 1203, 1230
BlsI GCNGC 9 cut(s) 826, 907, 934, 1006, 1033, 1105, 1132, 1204, 1231
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 2 cut(s) 101, 1016
Bme18I GGWCC 2 cut(s) 7, 577
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 4 cut(s) 7, 577, 1117, 1216
BmiI GGNNCC 4 cut(s) 19, 31, 279, 387
BmrFI CCNGG 2 cut(s) 101, 1016
BmsI GCATC 8 cut(s) 740, 811, 919, 931, 1018, 1030, 1117, 1216
BpiI GAAGAC 4 cut(s) 810, 918, 1017, 1215
BpmI CTGGAG 3 cut(s) 227, 372, 764
BpuEI CTTGAG 1 cut(s) 721
BsaI GGTCTC 2 cut(s) 316, 354
BsaJI CCNNGG 4 cut(s) 356, 580, 971, 1015
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 8 cut(s) 129, 159, 612, 642, 1075, 1105, 1174, 1204
Bse1I ACTGG 2 cut(s) 389, 747
Bse3DI GCAATG 1 cut(s) 556
BseAI TCCGGA 1 cut(s) 9
BseBI CCWGG 2 cut(s) 101, 1016
BseDI CCNNGG 4 cut(s) 356, 580, 971, 1015
BseGI GGATG 4 cut(s) 469, 514, 755, 1287
BseMI GCAATG 1 cut(s) 556
BseMII CTCAG 2 cut(s) 235, 327
BseNI ACTGG 2 cut(s) 389, 747
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 9 cut(s) 811, 892, 919, 991, 1018, 1090, 1117, 1189, 1216
Bsh1236I CGCG 2 cut(s) 50, 177
BshFI GGCC 3 cut(s) 104, 1119, 1218
BsiHKAI GWGCWC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
BsiSI CCGG 2 cut(s) 10, 184
BsmAI GTCTC 6 cut(s) 316, 354, 698, 950, 1049, 1148
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 3 cut(s) 104, 1119, 1218
Bso31I GGTCTC 2 cut(s) 316, 354
Bsp1286I GDGCHC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
Bsp13I TCCGGA 1 cut(s) 9
Bsp143I GATC 3 cut(s) 87, 199, 547
BspACI CCGC 3 cut(s) 15, 33, 50
BspANI GGCC 3 cut(s) 104, 1119, 1218
BspCNI CTCAG 2 cut(s) 234, 326
BspEI TCCGGA 1 cut(s) 9
BspFNI CGCG 2 cut(s) 50, 177
BspLI GGNNCC 4 cut(s) 19, 31, 279, 387
BspMAI CTGCAG 5 cut(s) 692, 910, 1009, 1108, 1207
BspPI GGATC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 370
BspTNI GGTCTC 2 cut(s) 316, 354
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 556
BsrI ACTGG 2 cut(s) 389, 747
BssECI CCNNGG 4 cut(s) 356, 580, 971, 1015
BssMI GATC 3 cut(s) 87, 199, 547
BssSI CACGAG 2 cut(s) 880, 979
BssT1I CCWWGG 3 cut(s) 356, 580, 971
Bst2BI CACGAG 2 cut(s) 880, 979
Bst2UI CCWGG 2 cut(s) 101, 1016
Bst4CI ACNGT 3 cut(s) 301, 440, 889
Bst6I CTCTTC 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 696
BstC8I GCNNGC 4 cut(s) 143, 181, 530, 815
BstDEI CTNAG 4 cut(s) 221, 313, 778, 1265
BstF5I GGATG 4 cut(s) 469, 514, 755, 1287
BstFNI CGCG 2 cut(s) 50, 177
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 5 cut(s) 50, 179, 363, 489, 898
BstKTI GATC 3 cut(s) 90, 202, 550
BstMAI GTCTC 6 cut(s) 316, 354, 698, 950, 1049, 1148
BstMBI GATC 3 cut(s) 87, 199, 547
BstMWI GCNNNNNNNGC 6 cut(s) 696, 833, 902, 941, 1040, 1139
BstNI CCWGG 2 cut(s) 101, 1016
BstNSI RCATGY 5 cut(s) 794, 902, 1001, 1100, 1199
BstSCI CCNGG 2 cut(s) 99, 1014
BstSFI CTRYAG 6 cut(s) 688, 798, 906, 1005, 1104, 1203
BstUI CGCG 2 cut(s) 50, 177
BstV1I GCAGC 9 cut(s) 811, 892, 919, 991, 1018, 1090, 1117, 1189, 1216
BstV2I GAAGAC 4 cut(s) 810, 918, 1017, 1215
BsuRI GGCC 3 cut(s) 104, 1119, 1218
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 4 cut(s) 469, 514, 755, 1287
BtsIMutI CAGTG 2 cut(s) 396, 445
Cac8I GCNNGC 4 cut(s) 143, 181, 530, 815
CaiI CAGNNNCTG 2 cut(s) 696, 1031
CfoI GCGC 5 cut(s) 50, 179, 363, 489, 898
Cfr13I GGNCC 4 cut(s) 7, 577, 1117, 1216
CseI GACGC 2 cut(s) 244, 1148
Csp6I GTAC 1 cut(s) 454
CviQI GTAC 1 cut(s) 454
DdeI CTNAG 4 cut(s) 221, 313, 778, 1265
DpnI GATC 3 cut(s) 89, 201, 549
DpnII GATC 3 cut(s) 87, 199, 547
DraI TTTAAA 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 3 cut(s) 356, 580, 971
Eco31I GGTCTC 2 cut(s) 316, 354
Eco32I GATATC 1 cut(s) 730
Eco47I GGWCC 2 cut(s) 7, 577
EcoRII CCWGG 2 cut(s) 99, 1014
EcoRV GATATC 1 cut(s) 730
EcoT14I CCWWGG 3 cut(s) 356, 580, 971
EcoT22I ATGCAT 1 cut(s) 723
ErhI CCWWGG 3 cut(s) 356, 580, 971
FalI AAGNNNNNCTT 2 cut(s) 349, 381
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 9 cut(s) 825, 906, 933, 1005, 1032, 1104, 1131, 1203, 1230
FokI GGATG 3 cut(s) 476, 521, 762
Fsp4HI GCNGC 9 cut(s) 825, 906, 933, 1005, 1032, 1104, 1131, 1203, 1230
FspAI RTGCGCAY 1 cut(s) 897
FspBI CTAG 6 cut(s) 369, 408, 818, 926, 1124, 1223
FspI TGCGCA 1 cut(s) 897
GlaI GCGC 5 cut(s) 49, 178, 362, 488, 897
GluI GCNGC 9 cut(s) 825, 906, 933, 1005, 1032, 1104, 1131, 1203, 1230
GsuI CTGGAG 3 cut(s) 227, 372, 764
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 3 cut(s) 104, 1119, 1218
HapII CCGG 2 cut(s) 10, 184
HgaI GACGC 2 cut(s) 244, 1148
HhaI GCGC 5 cut(s) 50, 179, 363, 489, 898
Hin6I GCGC 5 cut(s) 48, 177, 361, 487, 896
HinP1I GCGC 5 cut(s) 48, 177, 361, 487, 896
HinfI GANTC 2 cut(s) 187, 553
HpaII CCGG 2 cut(s) 10, 184
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 5 cut(s) 61, 77, 199, 436, 552
Hpy188III TCNNGA 3 cut(s) 10, 244, 650
Hpy8I GTNNAC 1 cut(s) 772
Hpy99I CGWCG 2 cut(s) 26, 29
HpyAV CCTTC 8 cut(s) 163, 204, 301, 440, 703, 1065, 1164, 1263
HpyCH4III ACNGT 3 cut(s) 301, 440, 889
HpyCH4IV ACGT 2 cut(s) 807, 1239
HpyF10VI GCNNNNNNNGC 6 cut(s) 696, 833, 902, 941, 1040, 1139
HpyF3I CTNAG 4 cut(s) 221, 313, 778, 1265
HpySE526I ACGT 2 cut(s) 807, 1239
HspAI GCGC 5 cut(s) 48, 177, 361, 487, 896
Kpn2I TCCGGA 1 cut(s) 9
Kzo9I GATC 3 cut(s) 87, 199, 547
LguI GCTCTTC 1 cut(s) 370
Lsp1109I GCAGC 9 cut(s) 811, 892, 919, 991, 1018, 1090, 1117, 1189, 1216
LweI GCATC 8 cut(s) 740, 811, 919, 931, 1018, 1030, 1117, 1216
MaeI CTAG 6 cut(s) 369, 408, 818, 926, 1124, 1223
MaeII ACGT 2 cut(s) 807, 1239
MaeIII GTNAC 5 cut(s) 283, 518, 683, 1136, 1235
MalI GATC 3 cut(s) 89, 201, 549
MbiI CCGCTC 1 cut(s) 15
MboI GATC 3 cut(s) 87, 199, 547
MhlI GDGCHC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 5 cut(s) 255, 333, 340, 713, 961
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 2 cut(s) 196, 547
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 8 cut(s) 177, 201, 251, 739, 760, 764, 975, 1278
Mox20I TGGCCA 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 723
MroI TCCGGA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 104
MseI TTAA 2 cut(s) 338, 716
MslI CAYNNNNRTG 3 cut(s) 1125, 1224, 1280
Msp20I TGGCCA 1 cut(s) 104
MspI CCGG 2 cut(s) 10, 184
MspR9I CCNGG 2 cut(s) 101, 1016
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 101, 1016
MvnI CGCG 2 cut(s) 50, 177
MwoI GCNNNNNNNGC 6 cut(s) 696, 833, 902, 941, 1040, 1139
NdeII GATC 3 cut(s) 87, 199, 547
NlaIV GGNNCC 4 cut(s) 19, 31, 279, 387
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 3 cut(s) 518, 1136, 1235
NsbI TGCGCA 1 cut(s) 897
NsiI ATGCAT 1 cut(s) 723
NspI RCATGY 5 cut(s) 794, 902, 1001, 1100, 1199
PciSI GCTCTTC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 114
PkrI GCNGC 9 cut(s) 826, 907, 934, 1006, 1033, 1105, 1132, 1204, 1231
PleI GAGTC 2 cut(s) 195, 547
PpsI GAGTC 2 cut(s) 195, 547
PshBI ATTAAT 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 99, 1014
PspGI CCWGG 2 cut(s) 99, 1014
PspN4I GGNNCC 4 cut(s) 19, 31, 279, 387
PspPI GGNCC 4 cut(s) 7, 577, 1117, 1216
PstI CTGCAG 5 cut(s) 692, 910, 1009, 1108, 1207
PstNI CAGNNNCTG 2 cut(s) 696, 1031
RsaI GTAC 1 cut(s) 455
RsaNI GTAC 1 cut(s) 454
RseI CAYNNNNRTG 3 cut(s) 1125, 1224, 1280
SapI GCTCTTC 1 cut(s) 370
SaqAI TTAA 2 cut(s) 338, 716
SatI GCNGC 9 cut(s) 825, 906, 933, 1005, 1032, 1104, 1131, 1203, 1230
Sau3AI GATC 3 cut(s) 87, 199, 547
Sau96I GGNCC 4 cut(s) 7, 577, 1117, 1216
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 2 cut(s) 196, 547
ScrFI CCNGG 2 cut(s) 101, 1016
SduI GDGCHC 6 cut(s) 881, 887, 980, 1079, 1178, 1277
SfaNI GCATC 8 cut(s) 740, 811, 919, 931, 1018, 1030, 1117, 1216
SfcI CTRYAG 6 cut(s) 688, 798, 906, 1005, 1104, 1203
SinI GGWCC 2 cut(s) 7, 577
SmiMI CAYNNNNRTG 3 cut(s) 1125, 1224, 1280
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
Sse9I AATT 5 cut(s) 255, 333, 340, 713, 961
SsiI CCGC 3 cut(s) 15, 33, 50
SspMI CTAG 6 cut(s) 369, 408, 818, 926, 1124, 1223
StyD4I CCNGG 2 cut(s) 99, 1014
StyI CCWWGG 3 cut(s) 356, 580, 971
TaaI ACNGT 3 cut(s) 301, 440, 889
TaiI ACGT 2 cut(s) 810, 1242
TaqI TCGA 1 cut(s) 129
TasI AATT 5 cut(s) 255, 333, 340, 713, 961
TatI WGTACW 1 cut(s) 453
Tru1I TTAA 2 cut(s) 338, 716
Tru9I TTAA 2 cut(s) 338, 716
TscAI CASTG 2 cut(s) 396, 445
TseFI GTSAC 3 cut(s) 518, 1136, 1235
TseI GCWGC 9 cut(s) 824, 905, 932, 1004, 1031, 1103, 1130, 1202, 1229
Tsp45I GTSAC 3 cut(s) 518, 1136, 1235
TspDTI ATGAA 5 cut(s) 525, 647, 1037, 1136, 1263
TspGWI ACGGA 2 cut(s) 42, 57
TspRI CASTG 2 cut(s) 396, 445
VpaK11BI GGWCC 2 cut(s) 7, 577
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 333, 340, 961
XceI RCATGY 5 cut(s) 794, 902, 1001, 1100, 1199
XspI CTAG 6 cut(s) 369, 408, 818, 926, 1124, 1223
ZrmI AGTACT 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.