FvH4_2g08140

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0009022
Physical Location & Seq
Forward (+)
7046592 .. 7050414
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08140.t1

Sequence Viewer

Length: 1137 bp
ATGAAAGTTCAAAGGCCTTCAGATAATGCCATGAAGGCCCGTCCTTTAACTCCACTAAGAGCAATTCGGGGTGTGGTTTGCTTACTTGTGCTTGTTTTGACCGCGTTCATGATGTTAGTGTATTTTGGCTTCGCGGGCGCTGTTTTAGTTAGAATTTTCAGCGTACCTTACAGTAGAAGAGTAACATCTGTCTTCTTTGGTGCTTGGATAGCTTTATGGCCTGTTCTTTTTGAAAAGATAAACGGGACTAAAGTTATTTTTTCTGGAGAAACTGTTCCCAGAGGGGAACGCATTTTGCTTATTTCAAACCATAGAACTGAGGTGGACTGGATGTACTTGTGGGACCTGGCGTTGCGCAAAGGACACCAGGGATTCATAAAGTATATCCTTAAAAGTAGTTTAATGAAACTTCCTGTATTTGGATGGTCGTTTCACATATTGGAGTTCATTTCTGTGGAGAGAAAGTGGGAGGTCGACGAACCAAATATGCGCCAAATGCTTTCAACTTTAAATGATTCTCAAGATTCTCTCTGGCTTGCTCTTTTCCCAGAAGGAACAGATTTCACTGAGCAGAAGTGCCTTCGTAATCAGAAATATGCTGTTGAACATGGCTTACCTGTACTAAAGCATGTCTTGCTTCCAAAAACAAAGGGCTTCTGTGCATGTTTAGAAGAATTAAGGGGATCTTTGGATGCAGTTTATGATGTGACCATTGGCTACAGGCCTAGTAGTCCGACTTTCTTCGACAATGCCTCTGGGGTGAACCCTTCTGAAGTTCATATGCATGTCCGCCGTATCCCACTTGATACTATTCCTACATCTGAAGACGAGGTTACAACTTGGCTAATGAATACATTTCATTTCAAGGACCAGTTGCTCTCTGATTTTCATTCTCAAGGTCATTTTCCCCATGAAGGAACAGAAGGTGAACTCTCTACTCTCAAGTGCCTTGTCAATTTTATGGCAGTGATTATCGCGACAGGAACATGTACATACTTAACCCTTTTCTCATCCATCTGGTTTAAGATATATGTATCTTCCGTTTGTGCATATCTCACATCTGCTACTTACTTCAATATTCGACCATTGCCTGTTGTTAGCCTTTTGATAGGTTTCTTTAAATGTAAATCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

379

Amino Acids

43.08

Weight (kDa)

8.69

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 85 - 200 1.1e-17 Acyltransferase
Acyltransf_C PF16076 253 - 322 3.6e-19 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 356
AccI GTMKAC 1 cut(s) 474
AccII CGCG 3 cut(s) 104, 134, 977
AciI CCGC 3 cut(s) 102, 134, 790
AclWI GGATC 1 cut(s) 691
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 2 cut(s) 792, 843
AfaI GTAC 4 cut(s) 165, 335, 621, 991
AfiI CCNNNNNNNGG 2 cut(s) 419, 914
AflIII ACRYGT 1 cut(s) 986
AgsI TTSAA 7 cut(s) 11, 233, 306, 504, 605, 865, 1075
AjnI CCWGG 2 cut(s) 345, 366
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
AlwI GGATC 1 cut(s) 691
AoxI GGCC 4 cut(s) 14, 36, 218, 722
ApoI RAATTY 1 cut(s) 153
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 3 cut(s) 140, 357, 492
AspS9I GGNCC 3 cut(s) 37, 343, 868
AsuHPI GGTGA 2 cut(s) 772, 938
AvaII GGWCC 2 cut(s) 343, 868
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbsI GAAGAC 2 cut(s) 184, 831
BccI CCATC 2 cut(s) 417, 1022
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 2 cut(s) 347, 368
BciVI GTATCC 1 cut(s) 806
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 141
BfuI GTATCC 1 cut(s) 806
BglI GCCNNNNNGGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 347, 368
Bme18I GGWCC 2 cut(s) 343, 868
BmgT120I GGNCC 3 cut(s) 37, 343, 868
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 347, 368
BmsI GCATC 1 cut(s) 682
BpiI GAAGAC 2 cut(s) 184, 831
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 3 cut(s) 504, 879, 926
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 914
Bse1I ACTGG 2 cut(s) 332, 871
Bse3DI GCAATG 1 cut(s) 1085
BseBI CCWGG 2 cut(s) 347, 368
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 4 cut(s) 336, 428, 697, 1010
BseLI CCNNNNNNNGG 2 cut(s) 419, 914
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 2 cut(s) 309, 558
BseNI ACTGG 2 cut(s) 332, 871
Bsh1236I CGCG 3 cut(s) 104, 134, 977
BshFI GGCC 4 cut(s) 16, 38, 220, 724
BslFI GGGAC 2 cut(s) 259, 356
BslI CCNNNNNNNGG 2 cut(s) 419, 914
BsmFI GGGAC 2 cut(s) 259, 356
BsnI GGCC 4 cut(s) 16, 38, 220, 724
Bsp1407I TGTACA 1 cut(s) 989
Bsp143I GATC 1 cut(s) 683
Bsp68I TCGCGA 1 cut(s) 977
BspACI CCGC 3 cut(s) 102, 134, 790
BspANI GGCC 4 cut(s) 16, 38, 220, 724
BspCNI CTCAG 2 cut(s) 310, 559
BspFNI CGCG 3 cut(s) 104, 134, 977
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 1085
BsrGI TGTACA 1 cut(s) 989
BsrI ACTGG 2 cut(s) 332, 871
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 1 cut(s) 683
Bst2UI CCWGG 2 cut(s) 347, 368
Bst4CI ACNGT 2 cut(s) 173, 274
Bst6I CTCTTC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 989
BstC8I GCNNGC 2 cut(s) 136, 537
BstDEI CTNAG 4 cut(s) 56, 318, 567, 1134
BstF5I GGATG 4 cut(s) 336, 428, 697, 1010
BstFNI CGCG 3 cut(s) 104, 134, 977
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 3 cut(s) 140, 357, 492
BstKTI GATC 1 cut(s) 686
BstMBI GATC 1 cut(s) 683
BstMWI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
BstNI CCWGG 2 cut(s) 347, 368
BstNSI RCATGY 4 cut(s) 632, 666, 788, 990
BstSCI CCNGG 2 cut(s) 345, 366
BstSFI CTRYAG 1 cut(s) 718
BstUI CGCG 3 cut(s) 104, 134, 977
BstV2I GAAGAC 2 cut(s) 184, 831
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuI GTATCC 1 cut(s) 806
BsuRI GGCC 4 cut(s) 16, 38, 220, 724
BtsCI GGATG 4 cut(s) 336, 428, 697, 1010
BtsI GCAGTG 1 cut(s) 972
BtsIMutI CAGTG 2 cut(s) 564, 972
BtuMI TCGCGA 1 cut(s) 977
Cac8I GCNNGC 2 cut(s) 136, 537
CciI TCATGA 1 cut(s) 108
CfoI GCGC 3 cut(s) 140, 357, 492
Cfr13I GGNCC 3 cut(s) 37, 343, 868
Csp6I GTAC 4 cut(s) 164, 334, 620, 990
CviAII CATG 8 cut(s) 31, 109, 608, 629, 663, 785, 911, 987
CviQI GTAC 4 cut(s) 164, 334, 620, 990
DdeI CTNAG 4 cut(s) 56, 318, 567, 1134
DpnI GATC 1 cut(s) 685
DpnII GATC 1 cut(s) 683
DraI TTTAAA 2 cut(s) 510, 1120
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 779
Eco147I AGGCCT 2 cut(s) 16, 724
Eco47I GGWCC 2 cut(s) 343, 868
Eco57I CTGAAG 2 cut(s) 792, 843
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 345, 366
EcoT22I ATGCAT 1 cut(s) 786
FaeI CATG 8 cut(s) 34, 112, 611, 632, 666, 788, 914, 990
FalI AAGNNNNNCTT 4 cut(s) 617, 649, 670, 702
FaqI GGGAC 2 cut(s) 259, 356
FatI CATG 8 cut(s) 30, 108, 607, 628, 662, 784, 910, 986
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 1 cut(s) 780
FblI GTMKAC 1 cut(s) 474
FokI GGATG 4 cut(s) 343, 435, 704, 997
FspBI CTAG 1 cut(s) 726
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 3 cut(s) 139, 356, 491
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 4 cut(s) 16, 38, 220, 724
HhaI GCGC 3 cut(s) 140, 357, 492
Hin1II CATG 8 cut(s) 34, 112, 611, 632, 666, 788, 914, 990
Hin6I GCGC 3 cut(s) 138, 355, 490
HinP1I GCGC 3 cut(s) 138, 355, 490
HincII GTYRAC 1 cut(s) 475
HindII GTYRAC 1 cut(s) 475
HinfI GANTC 3 cut(s) 372, 515, 524
HphI GGTGA 2 cut(s) 772, 938
Hpy166II GTNNAC 4 cut(s) 325, 475, 763, 929
Hpy188I TCNGA 6 cut(s) 22, 591, 735, 772, 823, 883
Hpy188III TCNNGA 4 cut(s) 109, 264, 521, 976
Hpy8I GTNNAC 4 cut(s) 325, 475, 763, 929
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 7 cut(s) 27, 28, 545, 590, 777, 908, 917
HpyCH4III ACNGT 2 cut(s) 173, 274
HpyCH4V TGCA 4 cut(s) 662, 695, 784, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
HpyF3I CTNAG 4 cut(s) 56, 318, 567, 1134
Hsp92II CATG 8 cut(s) 34, 112, 611, 632, 666, 788, 914, 990
HspAI GCGC 3 cut(s) 138, 355, 490
Kzo9I GATC 1 cut(s) 683
LweI GCATC 1 cut(s) 682
MaeI CTAG 1 cut(s) 726
MaeIII GTNAC 3 cut(s) 181, 706, 832
MalI GATC 1 cut(s) 685
MboI GATC 1 cut(s) 683
MboII GAAGA 6 cut(s) 184, 189, 683, 733, 836, 1029
MflI RGATCY 1 cut(s) 683
MluCI AATT 4 cut(s) 63, 153, 674, 955
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 5 cut(s) 275, 313, 463, 763, 823
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 8 cut(s) 47, 390, 401, 509, 677, 998, 1023, 1119
MslI CAYNNNNRTG 2 cut(s) 452, 783
MspR9I CCNGG 2 cut(s) 347, 368
MvaI CCWGG 2 cut(s) 347, 368
MvnI CGCG 3 cut(s) 104, 134, 977
MwoI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
NdeI CATATG 1 cut(s) 780
NdeII GATC 1 cut(s) 683
NlaIII CATG 8 cut(s) 34, 112, 611, 632, 666, 788, 914, 990
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 977
NsbI TGCGCA 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 4 cut(s) 632, 666, 788, 990
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 2 cut(s) 16, 724
PciI ACATGT 1 cut(s) 986
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 372, 515, 524
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 345, 366
PspGI CCWGG 2 cut(s) 345, 366
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 3 cut(s) 37, 343, 868
PspPPI RGGWCCY 1 cut(s) 343
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 1 cut(s) 683
RruI TCGCGA 1 cut(s) 977
RsaI GTAC 4 cut(s) 165, 335, 621, 991
RsaNI GTAC 4 cut(s) 164, 334, 620, 990
RseI CAYNNNNRTG 2 cut(s) 452, 783
SalI GTCGAC 1 cut(s) 473
SaqAI TTAA 8 cut(s) 47, 390, 401, 509, 677, 998, 1023, 1119
Sau3AI GATC 1 cut(s) 683
Sau96I GGNCC 3 cut(s) 37, 343, 868
ScrFI CCNGG 2 cut(s) 347, 368
SfaNI GCATC 1 cut(s) 682
SfcI CTRYAG 1 cut(s) 718
SinI GGWCC 2 cut(s) 343, 868
SmiMI CAYNNNNRTG 2 cut(s) 452, 783
SmlI CTYRAG 3 cut(s) 519, 894, 941
SmoI CTYRAG 3 cut(s) 519, 894, 941
Sse9I AATT 4 cut(s) 63, 153, 674, 955
SseBI AGGCCT 2 cut(s) 16, 724
SsiI CCGC 3 cut(s) 102, 134, 790
SspI AATATT 1 cut(s) 1078
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 2 cut(s) 16, 724
StyD4I CCNGG 2 cut(s) 345, 366
TaaI ACNGT 2 cut(s) 173, 274
TaqI TCGA 3 cut(s) 474, 744, 1081
TasI AATT 4 cut(s) 63, 153, 674, 955
TatI WGTACW 3 cut(s) 333, 619, 989
TfiI GAWTC 3 cut(s) 372, 515, 524
Tru1I TTAA 8 cut(s) 47, 390, 401, 509, 677, 998, 1023, 1119
Tru9I TTAA 8 cut(s) 47, 390, 401, 509, 677, 998, 1023, 1119
TscAI CASTG 2 cut(s) 571, 972
TseFI GTSAC 1 cut(s) 706
Tsp45I GTSAC 1 cut(s) 706
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 2 cut(s) 571, 972
VpaK11BI GGWCC 2 cut(s) 343, 868
XapI RAATTY 1 cut(s) 153
XceI RCATGY 4 cut(s) 632, 666, 788, 990
XmiI GTMKAC 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 726
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.