RLG00000014405

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009022
Physical Location & Seq
Reverse (-)
52792114 .. 52795051
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014405

Sequence Viewer

Length: 894 bp
ATGAAAATTGCAGAACCCAAAAAACTAGAAAGCAAGAAGAAAGAACAACATCAGACCTTGACGGGCGGTGGAAGAACATCAAGCCTAGTTGCAATAGCTCTTATGCACGTCAATGGGTTTGACGTTGTGATCAGATTGGGACTGCCCAAGCCGAGCCAACCCGAACAGTGCCCAGCCTCAAATTTCCACCGCCTTTTACAGTTTTCTACAAGGCAATACTGGGGTCCACGGCAGAACAAGGCTCCTACTCCATCTCAAACTCACTCCCTCCCTCACAGCCTCTCCTTCACGGTCAGCGAAGCTCGGAAAACCACCGCAACAAGTGAGCAGAAGTGCATCCGTAATCAGAAGTATGCTGCTGAACATGGCTTACCTGTACTAAAGCATGTCTTGCTTCCAAAAACAAAGGGCTTCTATGCCTGTTTAGAAGAATTAAGTGGTTCTTTGGATGCAGTTTATGATGTGACTATCGGCTACAGGCCTAGTAGTCCGACTTTCTTCGACAATGCTGCTGGGGTGAACCCTACTGAAGTTCATATGCATGTCCGACGTATCCCACTTGATAATATTCCCTCATCTGAAGACGAGGTTACGACTTGGCTAATGAATACATTTCATTTCAAGGACCAGTTGCTCTCTGATTTTCATTCTCAAGGCCATTTTCCCCATGAAGGAACAGAAGGTGAACTCCCTACTCTGAAGTGCCTTATCAATTTTATGGCAGTAATTATTGCAACAGGAACATGTACATACTTAACCCTTTTCTCGTCCATCTGGTTTAAGATATATGTATCTTCCGTTTGTGCATATCTCATATCTGCTACTTACTTCAATATTCGACCATTGCCCGTTGGTAGCCTTTTGAAAGGCTTGTTTAATTGTAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

298

Amino Acids

33.13

Weight (kDa)

9.0

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransf_C PF16076 172 - 241 6.6e-19 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 66, 190, 315
AcsI RAATTY 1 cut(s) 181
AcuI CTGAAG 3 cut(s) 549, 600, 719
AfaI GTAC 2 cut(s) 378, 748
AfiI CCNNNNNNNGG 1 cut(s) 671
AflIII ACRYGT 1 cut(s) 743
AgsI TTSAA 3 cut(s) 622, 832, 865
AjiI CACGTC 1 cut(s) 109
AluBI AGCT 2 cut(s) 98, 302
AluI AGCT 2 cut(s) 98, 302
AoxI GGCC 2 cut(s) 479, 655
ApeKI GCWGC 2 cut(s) 356, 509
ApoI RAATTY 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 224, 625
AsuHPI GGTGA 2 cut(s) 529, 695
AvaII GGWCC 2 cut(s) 224, 625
BaeGI GKGCMC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 343, 496
BccI CCATC 2 cut(s) 259, 779
BceAI ACGGC 1 cut(s) 245
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BciVI GTATCC 1 cut(s) 563
BclI TGATCA 1 cut(s) 129
BfaI CTAG 3 cut(s) 26, 86, 483
BfmI CTRYAG 1 cut(s) 475
BfuI GTATCC 1 cut(s) 563
BisI GCNGC 2 cut(s) 357, 510
BlsI GCNGC 2 cut(s) 358, 511
Bme18I GGWCC 2 cut(s) 224, 625
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 224, 625
BmiI GGNNCC 2 cut(s) 225, 243
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 345, 439
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 588
BpuEI CTTGAG 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse1I ACTGG 2 cut(s) 224, 628
Bse3DI GCAATG 1 cut(s) 842
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 2 cut(s) 336, 454
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 1 cut(s) 842
BseNI ACTGG 2 cut(s) 224, 628
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 2 cut(s) 343, 496
BseYI CCCAGC 2 cut(s) 172, 512
BshFI GGCC 2 cut(s) 481, 657
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 481, 657
Bsp1286I GDGCHC 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 746
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 3 cut(s) 66, 190, 315
BspANI GGCC 2 cut(s) 481, 657
BspLI GGNNCC 2 cut(s) 225, 243
BsrDI GCAATG 1 cut(s) 842
BsrGI TGTACA 1 cut(s) 746
BsrI ACTGG 2 cut(s) 224, 628
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 1 cut(s) 129
Bst4CI ACNGT 3 cut(s) 168, 201, 292
BstAPI GCANNNNNTGC 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 746
BstDEI CTNAG 1 cut(s) 891
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 2 cut(s) 336, 454
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNSI RCATGY 3 cut(s) 389, 545, 747
BstSFI CTRYAG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 343, 496
BstV2I GAAGAC 1 cut(s) 588
BsuI GTATCC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 481, 657
BtgI CCRYGG 1 cut(s) 227
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 336, 454
BtsIMutI CAGTG 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 224, 625
Csp6I GTAC 2 cut(s) 377, 747
CviAII CATG 5 cut(s) 365, 386, 542, 668, 744
CviQI GTAC 2 cut(s) 377, 747
DdeI CTNAG 1 cut(s) 891
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 481
Eco47I GGWCC 2 cut(s) 224, 625
Eco57I CTGAAG 3 cut(s) 549, 600, 719
EcoT22I ATGCAT 1 cut(s) 543
FaeI CATG 5 cut(s) 368, 389, 545, 671, 747
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 427, 459
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 364, 385, 541, 667, 743
FauNDI CATATG 1 cut(s) 537
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 357, 510
FokI GGATG 2 cut(s) 323, 461
Fsp4HI GCNGC 2 cut(s) 357, 510
FspBI CTAG 3 cut(s) 26, 86, 483
GluI GCNGC 2 cut(s) 357, 510
GsaI CCCAGC 2 cut(s) 176, 516
HaeIII GGCC 2 cut(s) 481, 657
Hin1II CATG 5 cut(s) 368, 389, 545, 671, 747
HphI GGTGA 2 cut(s) 529, 695
Hpy166II GTNNAC 3 cut(s) 227, 520, 686
Hpy188I TCNGA 9 cut(s) 54, 134, 306, 348, 492, 548, 580, 640, 699
Hpy8I GTNNAC 3 cut(s) 227, 520, 686
Hpy99I CGWCG 1 cut(s) 552
HpyAV CCTTC 3 cut(s) 295, 665, 674
HpyCH4III ACNGT 3 cut(s) 168, 201, 292
HpyCH4IV ACGT 3 cut(s) 108, 123, 550
HpyCH4V TGCA 8 cut(s) 11, 92, 106, 336, 452, 541, 734, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 891
HpySE526I ACGT 3 cut(s) 108, 123, 550
Hsp92II CATG 5 cut(s) 368, 389, 545, 671, 747
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 186, 205, 387, 433, 463, 498, 641, 723, 760
Lsp1109I GCAGC 2 cut(s) 343, 496
LweI GCATC 2 cut(s) 345, 439
MaeI CTAG 3 cut(s) 26, 86, 483
MaeII ACGT 3 cut(s) 108, 123, 550
MaeIII GTNAC 2 cut(s) 463, 589
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 6 cut(s) 49, 84, 440, 490, 593, 786
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 6 cut(s) 6, 181, 431, 712, 726, 877
MmeI TCCRAC 2 cut(s) 515, 571
MnlI CCTC 6 cut(s) 187, 278, 282, 290, 580, 583
Mph1103I ATGCAT 1 cut(s) 543
MseI TTAA 4 cut(s) 434, 755, 780, 876
MslI CAYNNNNRTG 2 cut(s) 111, 540
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeI CATATG 1 cut(s) 537
NdeII GATC 1 cut(s) 129
NlaIII CATG 5 cut(s) 368, 389, 545, 671, 747
NlaIV GGNNCC 2 cut(s) 225, 243
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 463
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 3 cut(s) 389, 545, 747
PceI AGGCCT 1 cut(s) 481
PciI ACATGT 1 cut(s) 743
PkrI GCNGC 2 cut(s) 358, 511
PscI ACATGT 1 cut(s) 743
PspFI CCCAGC 2 cut(s) 172, 512
PspN4I GGNNCC 2 cut(s) 225, 243
PspPI GGNCC 2 cut(s) 224, 625
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
RsaI GTAC 2 cut(s) 378, 748
RsaNI GTAC 2 cut(s) 377, 747
RseI CAYNNNNRTG 2 cut(s) 111, 540
SaqAI TTAA 4 cut(s) 434, 755, 780, 876
SatI GCNGC 2 cut(s) 357, 510
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 224, 625
SduI GDGCHC 1 cut(s) 173
SetI ASST 9 cut(s) 59, 100, 111, 126, 304, 376, 553, 591, 685
SfaNI GCATC 2 cut(s) 345, 439
SfcI CTRYAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 224, 625
SmiMI CAYNNNNRTG 2 cut(s) 111, 540
SmlI CTYRAG 1 cut(s) 651
SmoI CTYRAG 1 cut(s) 651
Sse9I AATT 6 cut(s) 6, 181, 431, 712, 726, 877
SseBI AGGCCT 1 cut(s) 481
SsiI CCGC 3 cut(s) 66, 190, 315
SspI AATATT 2 cut(s) 568, 835
SspMI CTAG 3 cut(s) 26, 86, 483
StuI AGGCCT 1 cut(s) 481
TaaI ACNGT 3 cut(s) 168, 201, 292
TaiI ACGT 3 cut(s) 111, 126, 553
TaqI TCGA 2 cut(s) 501, 838
TasI AATT 6 cut(s) 6, 181, 431, 712, 726, 877
TatI WGTACW 2 cut(s) 376, 746
Tru1I TTAA 4 cut(s) 434, 755, 780, 876
Tru9I TTAA 4 cut(s) 434, 755, 780, 876
TscAI CASTG 1 cut(s) 173
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 2 cut(s) 356, 509
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 6 cut(s) 17, 524, 605, 620, 635, 684
TspGWI ACGGA 2 cut(s) 329, 787
TspRI CASTG 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 224, 625
XapI RAATTY 1 cut(s) 181
XceI RCATGY 3 cut(s) 389, 545, 747
XspI CTAG 3 cut(s) 26, 86, 483
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.