RchiOBHm_Chr6g0262951

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0009022
Physical Location & Seq
Forward (+)
17740115 .. 17743827
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23582

Sequence Viewer

Length: 1137 bp
ATGGATGTTCAAAGGCCTTCAAATAATGCCATGAGTGCCCGTCCATTAACTCCACTGAGAGCAATTAGGGGTGTGGTTTGCTTAATTGTGCTTGTTTTGACTGCCTTCATGATGTTAGTGTATTTTGGCTTCATGGGCGCTGTTATAGTTAGGATTTTTAGCATACCTTACAGTAGAAGAGTAACAGCTGTCTTCTATGGTGCTTGGATAGCTTTATGGCCTGTTCTTTTTGAAAAGATAAACGGGACTAAAGTTATCTTTTCTGGGGAAACTGTTCCCACAGGGGAACGCATTTTGCTTATTTCAAATCATCGAACTGAGGTGGACTGGATGTATTTGTGGGACTTGGCATTGCGCAAAGGACAGCAGGGATACATAAAGTATATCCTTAAAAGTAGTTTAATGAAACTTCCTGTATTTGGTTGGACGTTTCACATAATGGAGTACATTTCCGTGGAGAGAAAGTGGGAGGTCGATGAACCAAATATGCGTCGAATGCTTTCAACTTTAAATGATCCTCAAGATTCTCTCTGGCTTGCTCTTTTCCCAGAAGGAACAGATTTCACTGAGCAGAAGTGCATCCGTAATCAGAAGTATGCTGCTGAACATGGCTTACCTGTACTAAAGCATGTCTTGCTTCCAAAAACAAAGGGCTTCTATGCATGTTTAGAAGAATTAAGGGGATCTTTGGATGCAGTTTATGATGTGACTATCGGCTATAGGCCTAGTAGTCCGACTTTCTTCGACAATGCCGCTGGGGTGAACCCTACTGAAGTTCATATGCATGTCCGACGTATCCCACTTGATAATATTCCCTCATCTGAAGACGAGGTTACGACTTGGCTAATGAATACATTTCATTTCAAAGACCAGTTGCTCTCAGATTTTCATTCTCAAGGCCATTTTCCCCATGAAGGAACAGAAGGTGAACTCTCTACTCTGAAGTGCCTTATCAATTTTATGGCAGTAATTATCGCGACAGGAACGTGTACATACCTAACCCTTTTCTCGTCCATCTGGTTTAAGATATATGTATCTTCCGTTTGTGCATATCTCATATCTGCTACTTACTTCAATATTCGACCATTGCCCATTGTTAGCCTTTTGAAAGGCTTGTTTAATTGTAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

378

Amino Acids

43.17

Weight (kDa)

8.37

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 85 - 208 2.6e-17 Acyltransferase
Acyltransf_C PF16076 253 - 322 1.1e-18 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 356
AccII CGCG 1 cut(s) 977
AciI CCGC 1 cut(s) 753
AclWI GGATC 2 cut(s) 509, 691
AcuI CTGAAG 3 cut(s) 792, 843, 962
AfaI GTAC 3 cut(s) 446, 621, 991
AfiI CCNNNNNNNGG 2 cut(s) 419, 914
AflIII ACRYGT 1 cut(s) 986
AgsI TTSAA 8 cut(s) 11, 21, 233, 306, 504, 865, 1075, 1108
AluBI AGCT 2 cut(s) 188, 212
AluI AGCT 2 cut(s) 188, 212
AlwI GGATC 2 cut(s) 509, 691
AoxI GGCC 4 cut(s) 14, 218, 722, 898
ApeKI GCWGC 1 cut(s) 599
Asp700I GAANNNNTTC 2 cut(s) 273, 499
AspLEI GCGC 2 cut(s) 140, 357
AsuHPI GGTGA 2 cut(s) 772, 938
BaeGI GKGCMC 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbsI GAAGAC 2 cut(s) 184, 831
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 1022
BciVI GTATCC 2 cut(s) 365, 806
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 141
BfuI GTATCC 2 cut(s) 365, 806
BisI GCNGC 2 cut(s) 600, 753
BlsI GCNGC 2 cut(s) 601, 754
BmsI GCATC 2 cut(s) 588, 682
BpiI GAAGAC 2 cut(s) 184, 831
BpuEI CTTGAG 2 cut(s) 504, 879
BsaJI CCNNGG 1 cut(s) 453
BsaXI ACNNNNNCTCC 2 cut(s) 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 914
Bse1I ACTGG 2 cut(s) 332, 871
Bse3DI GCAATG 2 cut(s) 350, 1085
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 4 cut(s) 10, 336, 579, 697
BseLI CCNNNNNNNGG 2 cut(s) 419, 914
BseMI GCAATG 2 cut(s) 350, 1085
BseMII CTCAG 4 cut(s) 47, 309, 558, 894
BseNI ACTGG 2 cut(s) 332, 871
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 4 cut(s) 16, 220, 724, 900
BslFI GGGAC 2 cut(s) 259, 356
BslI CCNNNNNNNGG 2 cut(s) 419, 914
BsmFI GGGAC 2 cut(s) 259, 356
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 4 cut(s) 16, 220, 724, 900
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 989
Bsp143I GATC 2 cut(s) 514, 683
Bsp68I TCGCGA 1 cut(s) 977
BspACI CCGC 1 cut(s) 753
BspANI GGCC 4 cut(s) 16, 220, 724, 900
BspCNI CTCAG 4 cut(s) 48, 310, 559, 893
BspFNI CGCG 1 cut(s) 977
BspHI TCATGA 1 cut(s) 108
BspPI GGATC 2 cut(s) 509, 691
BsrDI GCAATG 2 cut(s) 350, 1085
BsrGI TGTACA 1 cut(s) 989
BsrI ACTGG 2 cut(s) 332, 871
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 514, 683
Bst4CI ACNGT 2 cut(s) 173, 274
Bst6I CTCTTC 1 cut(s) 172
BstAPI GCANNNNNTGC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 5 cut(s) 56, 318, 567, 880, 1134
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 4 cut(s) 10, 336, 579, 697
BstFNI CGCG 1 cut(s) 977
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 357
BstKTI GATC 2 cut(s) 517, 686
BstMBI GATC 2 cut(s) 514, 683
BstMWI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
BstNSI RCATGY 3 cut(s) 632, 666, 788
BstSFI CTRYAG 1 cut(s) 718
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 2 cut(s) 184, 831
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuI GTATCC 2 cut(s) 365, 806
BsuRI GGCC 4 cut(s) 16, 220, 724, 900
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 4 cut(s) 10, 336, 579, 697
BtsIMutI CAGTG 2 cut(s) 53, 564
BtuMI TCGCGA 1 cut(s) 977
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 1 cut(s) 108
CfoI GCGC 2 cut(s) 140, 357
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 445, 620, 990
CviAII CATG 8 cut(s) 31, 109, 133, 608, 629, 663, 785, 911
CviQI GTAC 3 cut(s) 445, 620, 990
DdeI CTNAG 5 cut(s) 56, 318, 567, 880, 1134
DpnI GATC 2 cut(s) 516, 685
DpnII GATC 2 cut(s) 514, 683
DraI TTTAAA 1 cut(s) 510
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco147I AGGCCT 2 cut(s) 16, 724
Eco57I CTGAAG 3 cut(s) 792, 843, 962
EcoT22I ATGCAT 2 cut(s) 664, 786
FaeI CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
FalI AAGNNNNNCTT 4 cut(s) 617, 649, 670, 702
FaqI GGGAC 2 cut(s) 259, 356
FatI CATG 8 cut(s) 30, 108, 132, 607, 628, 662, 784, 910
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 2 cut(s) 600, 753
FokI GGATG 4 cut(s) 17, 343, 566, 704
Fsp4HI GCNGC 2 cut(s) 600, 753
FspBI CTAG 1 cut(s) 726
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 2 cut(s) 139, 356
GluI GCNGC 2 cut(s) 600, 753
GsaI CCCAGC 1 cut(s) 759
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 4 cut(s) 16, 220, 724, 900
HgaI GACGC 1 cut(s) 479
HhaI GCGC 2 cut(s) 140, 357
Hin1II CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
Hin6I GCGC 2 cut(s) 138, 355
HinP1I GCGC 2 cut(s) 138, 355
HinfI GANTC 1 cut(s) 524
HphI GGTGA 2 cut(s) 772, 938
Hpy166II GTNNAC 4 cut(s) 325, 763, 929, 990
Hpy188I TCNGA 6 cut(s) 591, 735, 791, 823, 883, 942
Hpy188III TCNNGA 3 cut(s) 109, 521, 976
Hpy8I GTNNAC 4 cut(s) 325, 763, 929, 990
Hpy99I CGWCG 2 cut(s) 495, 795
HpyAV CCTTC 5 cut(s) 27, 115, 545, 908, 917
HpyCH4III ACNGT 2 cut(s) 173, 274
HpyCH4IV ACGT 3 cut(s) 428, 793, 986
HpyCH4V TGCA 5 cut(s) 579, 662, 695, 784, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
HpyF3I CTNAG 5 cut(s) 56, 318, 567, 880, 1134
HpySE526I ACGT 3 cut(s) 428, 793, 986
Hsp92II CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
HspAI GCGC 2 cut(s) 138, 355
Kzo9I GATC 2 cut(s) 514, 683
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 2 cut(s) 588, 682
MaeI CTAG 1 cut(s) 726
MaeII ACGT 3 cut(s) 428, 793, 986
MaeIII GTNAC 3 cut(s) 181, 706, 832
MalI GATC 2 cut(s) 516, 685
MboI GATC 2 cut(s) 514, 683
MboII GAAGA 6 cut(s) 184, 189, 683, 733, 836, 1029
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
MmeI TCCRAC 3 cut(s) 404, 758, 814
MnlI CCTC 5 cut(s) 313, 463, 528, 823, 826
Mph1103I ATGCAT 2 cut(s) 664, 786
MroXI GAANNNNTTC 2 cut(s) 273, 499
MseI TTAA 8 cut(s) 47, 83, 390, 401, 509, 677, 1023, 1119
MslI CAYNNNNRTG 2 cut(s) 452, 783
MspA1I CMGCKG 2 cut(s) 188, 755
Mva1269I GAATGC 1 cut(s) 501
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 514, 683
NlaIII CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 977
NsbI TGCGCA 1 cut(s) 356
NsiI ATGCAT 2 cut(s) 664, 786
NspI RCATGY 3 cut(s) 632, 666, 788
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 2 cut(s) 16, 724
PctI GAATGC 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 273, 499
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 2 cut(s) 601, 754
PspFI CCCAGC 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 188
RruI TCGCGA 1 cut(s) 977
RsaI GTAC 3 cut(s) 446, 621, 991
RsaNI GTAC 3 cut(s) 445, 620, 990
RseI CAYNNNNRTG 2 cut(s) 452, 783
SaqAI TTAA 8 cut(s) 47, 83, 390, 401, 509, 677, 1023, 1119
SatI GCNGC 2 cut(s) 600, 753
Sau3AI GATC 2 cut(s) 514, 683
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 588, 682
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 452, 783
SmlI CTYRAG 2 cut(s) 519, 894
SmoI CTYRAG 2 cut(s) 519, 894
Sse9I AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
SseBI AGGCCT 2 cut(s) 16, 724
SsiI CCGC 1 cut(s) 753
SspI AATATT 2 cut(s) 811, 1078
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 2 cut(s) 16, 724
TaaI ACNGT 2 cut(s) 173, 274
TaiI ACGT 3 cut(s) 431, 796, 989
TaqI TCGA 5 cut(s) 313, 474, 493, 744, 1081
TasI AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
TatI WGTACW 3 cut(s) 444, 619, 989
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 8 cut(s) 47, 83, 390, 401, 509, 677, 1023, 1119
Tru9I TTAA 8 cut(s) 47, 83, 390, 401, 509, 677, 1023, 1119
TscAI CASTG 2 cut(s) 60, 571
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 9 cut(s) 97, 121, 419, 492, 767, 848, 863, 878, 927
TspGWI ACGGA 3 cut(s) 442, 572, 1030
TspRI CASTG 2 cut(s) 60, 571
XceI RCATGY 3 cut(s) 632, 666, 788
XmnI GAANNNNTTC 2 cut(s) 273, 499
XspI CTAG 1 cut(s) 726
Zsp2I ATGCAT 2 cut(s) 664, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.