Rw6G010400

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009022
Physical Location & Seq
Forward (+)
18009864 .. 18012679
2816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010400.1

Sequence Viewer

Length: 1059 bp
ATGGATGTTCAAAGGCCTTCAAATAATGCCATGAGTGCCCGTCCGTTAACTCCACTGAGAGCAATTAGGGGGTGGATTTTCAGCATACCTTACAGTAGAAGAGTAACAGCTGTCTTCTATGGTGCTTGGATAGCTTTATGGCCTGTTCTTTTTGAAAAGATAAACGGGACTAAAGTTATCTTTTCTGGAGAAACTGTTCCCACAGGGGAACGCATTTTGCTGATTTCAAATCATCGAACTGAGGTGGACTGGATGTATTTGTGGGACTTGGCACTGCGCAAAGGACAGCAGGGATACATAAAGTATATCCTTAAAAGTAGTTTAATGAAACTTCCTGTATTTGGTTGGACGTTTCACATAATGGAGTACATTTCCGTGGAGAGAAAGTGGGAGGTCGATGAACCAAATATGCGTCGAATGCTTTCAACTTTAAACGATCCTCAAGATTCTCTCTGGCTTGCTCTTTTCCCAGAAGGAACAGATTTCACTGAGCAGAAGTGCATCCGTAATCAGAAGTATGCTGCTGAACATGGCTTACCTGTACTAAAGCATGTCTTGCTTCCAAAAACAAAGGGCTTCTATGCATGTTTAGAAGAATTAAGGGGATCTTTGGATGCAGTTTATGATGTGACTATCGGCTATAGGCCTAGTAGTCCGACTTTCTTCGACAATGCCGCTGGGGTGAACCCTACTGAAGTTCATATGCATATCCGACGTATCCCACTTGATAATATTCCCTCATCTGAAGACGAGGTTACGACTTGGCTAATGAATACATTTCATTTCAAAGACCAGTTGCTCTCTGATTTTCATTCTCAAGGCCATTTTCCCCATGAAGGAACAGAAGGTGAACTCTCTACTCTGAAGTGCCTTATCAATTTTATGGCAGTAATTATCGCGACAGGAACGTGTACATACCTAACCCTATTCTCGTCCATCTGGTTTAAGATATATGTATCTTCCGTTTGTGCATATCTCATATCTGCTACTTACTTCAATATTCGACCATTGCCCATTGTTAGCCTTTTGAAAGGCTTGTTTAATTGTAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

352

Amino Acids

40.38

Weight (kDa)

8.14

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 59 - 182 2.2e-17 Acyltransferase
Acyltransf_C PF16076 227 - 296 8.6e-19 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
AccII CGCG 1 cut(s) 899
AciI CCGC 1 cut(s) 675
AclWI GGATC 2 cut(s) 431, 613
AcuI CTGAAG 3 cut(s) 714, 765, 884
AfaI GTAC 3 cut(s) 368, 543, 913
AfiI CCNNNNNNNGG 2 cut(s) 341, 836
AflIII ACRYGT 1 cut(s) 908
AgsI TTSAA 8 cut(s) 11, 21, 155, 228, 426, 787, 997, 1030
AloI GAACNNNNNNTCC 2 cut(s) 180, 212
AluBI AGCT 2 cut(s) 110, 134
AluI AGCT 2 cut(s) 110, 134
AlwI GGATC 2 cut(s) 431, 613
AoxI GGCC 4 cut(s) 14, 140, 644, 820
ApeKI GCWGC 1 cut(s) 521
Asp700I GAANNNNTTC 2 cut(s) 195, 421
AspLEI GCGC 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 694, 860
BaeGI GKGCMC 1 cut(s) 40
BbsI GAAGAC 2 cut(s) 106, 753
BbvI GCAGC 1 cut(s) 508
BccI CCATC 1 cut(s) 944
BciVI GTATCC 2 cut(s) 287, 728
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 640
BfuI GTATCC 2 cut(s) 287, 728
BisI GCNGC 2 cut(s) 522, 675
BlsI GCNGC 2 cut(s) 523, 676
BmsI GCATC 2 cut(s) 510, 604
BpiI GAAGAC 2 cut(s) 106, 753
BpmI CTGGAG 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 426, 801
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 4 cut(s) 180, 210, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 836
Bse1I ACTGG 2 cut(s) 254, 793
Bse3DI GCAATG 1 cut(s) 1007
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 4 cut(s) 10, 258, 501, 619
BseLI CCNNNNNNNGG 2 cut(s) 341, 836
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 3 cut(s) 47, 231, 480
BseNI ACTGG 2 cut(s) 254, 793
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 4 cut(s) 16, 142, 646, 822
BslFI GGGAC 2 cut(s) 181, 278
BslI CCNNNNNNNGG 2 cut(s) 341, 836
BsmFI GGGAC 2 cut(s) 181, 278
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 4 cut(s) 16, 142, 646, 822
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 911
Bsp143I GATC 2 cut(s) 436, 605
Bsp68I TCGCGA 1 cut(s) 899
BspACI CCGC 1 cut(s) 675
BspANI GGCC 4 cut(s) 16, 142, 646, 822
BspCNI CTCAG 3 cut(s) 48, 232, 481
BspFNI CGCG 1 cut(s) 899
BspPI GGATC 2 cut(s) 431, 613
BsrDI GCAATG 1 cut(s) 1007
BsrGI TGTACA 1 cut(s) 911
BsrI ACTGG 2 cut(s) 254, 793
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 436, 605
Bst4CI ACNGT 2 cut(s) 95, 196
Bst6I CTCTTC 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 556
BstAUI TGTACA 1 cut(s) 911
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 4 cut(s) 56, 240, 489, 1056
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 4 cut(s) 10, 258, 501, 619
BstFNI CGCG 1 cut(s) 899
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 439, 608
BstMBI GATC 2 cut(s) 436, 605
BstMWI GCNNNNNNNGC 4 cut(s) 35, 131, 418, 556
BstNSI RCATGY 2 cut(s) 554, 588
BstSFI CTRYAG 1 cut(s) 640
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 1 cut(s) 508
BstV2I GAAGAC 2 cut(s) 106, 753
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BsuI GTATCC 2 cut(s) 287, 728
BsuRI GGCC 4 cut(s) 16, 142, 646, 822
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 4 cut(s) 10, 258, 501, 619
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 3 cut(s) 53, 272, 486
BtuMI TCGCGA 1 cut(s) 899
Cac8I GCNNGC 1 cut(s) 459
CfoI GCGC 1 cut(s) 279
CseI GACGC 1 cut(s) 401
Csp6I GTAC 3 cut(s) 367, 542, 912
CviAII CATG 5 cut(s) 31, 530, 551, 585, 833
CviQI GTAC 3 cut(s) 367, 542, 912
DdeI CTNAG 4 cut(s) 56, 240, 489, 1056
DpnI GATC 2 cut(s) 438, 607
DpnII GATC 2 cut(s) 436, 605
DraI TTTAAA 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco147I AGGCCT 2 cut(s) 16, 646
Eco57I CTGAAG 3 cut(s) 714, 765, 884
EcoT22I ATGCAT 2 cut(s) 586, 708
FaeI CATG 5 cut(s) 34, 533, 554, 588, 836
FalI AAGNNNNNCTT 4 cut(s) 539, 571, 592, 624
FaqI GGGAC 2 cut(s) 181, 278
FatI CATG 5 cut(s) 30, 529, 550, 584, 832
FauNDI CATATG 1 cut(s) 702
Fnu4HI GCNGC 2 cut(s) 522, 675
FokI GGATG 4 cut(s) 17, 265, 488, 626
Fsp4HI GCNGC 2 cut(s) 522, 675
FspBI CTAG 1 cut(s) 648
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 1 cut(s) 278
GluI GCNGC 2 cut(s) 522, 675
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 4 cut(s) 16, 142, 646, 822
HgaI GACGC 1 cut(s) 401
HhaI GCGC 1 cut(s) 279
Hin1II CATG 5 cut(s) 34, 533, 554, 588, 836
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 446
HpaI GTTAAC 1 cut(s) 48
HphI GGTGA 2 cut(s) 694, 860
Hpy166II GTNNAC 5 cut(s) 48, 247, 685, 851, 912
Hpy188I TCNGA 6 cut(s) 513, 657, 713, 745, 805, 864
Hpy188III TCNNGA 3 cut(s) 186, 443, 898
Hpy8I GTNNAC 5 cut(s) 48, 247, 685, 851, 912
Hpy99I CGWCG 2 cut(s) 417, 717
HpyAV CCTTC 4 cut(s) 27, 467, 830, 839
HpyCH4III ACNGT 2 cut(s) 95, 196
HpyCH4IV ACGT 3 cut(s) 350, 715, 908
HpyCH4V TGCA 5 cut(s) 501, 584, 617, 706, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 131, 418, 556
HpyF3I CTNAG 4 cut(s) 56, 240, 489, 1056
HpySE526I ACGT 3 cut(s) 350, 715, 908
Hsp92II CATG 5 cut(s) 34, 533, 554, 588, 836
HspAI GCGC 1 cut(s) 277
KspAI GTTAAC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 436, 605
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 2 cut(s) 510, 604
MaeI CTAG 1 cut(s) 648
MaeII ACGT 3 cut(s) 350, 715, 908
MaeIII GTNAC 3 cut(s) 103, 628, 754
MalI GATC 2 cut(s) 438, 607
MboI GATC 2 cut(s) 436, 605
MboII GAAGA 6 cut(s) 106, 111, 605, 655, 758, 951
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 5 cut(s) 63, 596, 877, 891, 1042
MmeI TCCRAC 3 cut(s) 326, 680, 736
MnlI CCTC 5 cut(s) 235, 385, 450, 745, 748
Mph1103I ATGCAT 2 cut(s) 586, 708
MroXI GAANNNNTTC 2 cut(s) 195, 421
MseI TTAA 7 cut(s) 47, 312, 323, 431, 599, 945, 1041
MslI CAYNNNNRTG 1 cut(s) 374
MspA1I CMGCKG 2 cut(s) 110, 677
Mva1269I GAATGC 1 cut(s) 423
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 4 cut(s) 35, 131, 418, 556
NdeI CATATG 1 cut(s) 702
NdeII GATC 2 cut(s) 436, 605
NlaIII CATG 5 cut(s) 34, 533, 554, 588, 836
NmuCI GTSAC 1 cut(s) 628
NruI TCGCGA 1 cut(s) 899
NsbI TGCGCA 1 cut(s) 278
NsiI ATGCAT 2 cut(s) 586, 708
NspI RCATGY 2 cut(s) 554, 588
PceI AGGCCT 2 cut(s) 16, 646
PctI GAATGC 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 195, 421
PfeI GAWTC 1 cut(s) 446
PkrI GCNGC 2 cut(s) 523, 676
PspFI CCCAGC 1 cut(s) 677
PsrI GAACNNNNNNTAC 2 cut(s) 519, 551
PsuI RGATCY 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 110
RruI TCGCGA 1 cut(s) 899
RsaI GTAC 3 cut(s) 368, 543, 913
RsaNI GTAC 3 cut(s) 367, 542, 912
RseI CAYNNNNRTG 1 cut(s) 374
SaqAI TTAA 7 cut(s) 47, 312, 323, 431, 599, 945, 1041
SatI GCNGC 2 cut(s) 522, 675
Sau3AI GATC 2 cut(s) 436, 605
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 510, 604
SfcI CTRYAG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 441, 816
SmoI CTYRAG 2 cut(s) 441, 816
Sse9I AATT 5 cut(s) 63, 596, 877, 891, 1042
SseBI AGGCCT 2 cut(s) 16, 646
SsiI CCGC 1 cut(s) 675
SspI AATATT 2 cut(s) 733, 1000
SspMI CTAG 1 cut(s) 648
StuI AGGCCT 2 cut(s) 16, 646
TaaI ACNGT 2 cut(s) 95, 196
TaiI ACGT 3 cut(s) 353, 718, 911
TaqI TCGA 5 cut(s) 235, 396, 415, 666, 1003
TasI AATT 5 cut(s) 63, 596, 877, 891, 1042
TatI WGTACW 3 cut(s) 366, 541, 911
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 7 cut(s) 47, 312, 323, 431, 599, 945, 1041
Tru9I TTAA 7 cut(s) 47, 312, 323, 431, 599, 945, 1041
TscAI CASTG 3 cut(s) 60, 279, 493
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 7 cut(s) 341, 414, 689, 770, 785, 800, 849
TspGWI ACGGA 4 cut(s) 33, 364, 494, 952
TspRI CASTG 3 cut(s) 60, 279, 493
XceI RCATGY 2 cut(s) 554, 588
XmnI GAANNNNTTC 2 cut(s) 195, 421
XspI CTAG 1 cut(s) 648
Zsp2I ATGCAT 2 cut(s) 586, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.