MD10G1081700.v1.1

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0009022
Physical Location & Seq
Reverse (-)
12020701 .. 12026197
5497 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1081700.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGGAAGTTCAAAGACCTTCGAATGATGCAATGAAGCACCTTCCTTTAACTCCACTGAGAGCAATTAGGGGTGTTGTGTGCTTACTTGTACTTGTTTTGACTGCATTCATGATGTTAGTCTATTTCGGCTTTTTGGGTGCTGTTATAATTAGACTTTTCAGCATACATTACAGTAGAAGAGTAACATCCTTCTTCTATGGTAATTGGATAGCTTTGTGGCCTTTTCTTTTTGAAAAGATAAACAAGACTAAAGTTATTATTTCTGGAGAAACTGTTCCTGCTGGTGAGCGCATCTTGCTTATGTCAAACCATAGGACTGAGGTTGATTGGATGTACTTGTGGGACCTGGCACTGCGAAAGGGACGCCAGGGATACATAAAGTATATTCTTAAAAGCAGTTTGATGAAACTGCCTGTGTTTGGTTGGTCGTTTCACATATTGGAGTTCATCTCTGTGGAGAGGAAGTGGGAGGTCGATGAATTAAACATGCGTCGAATGCTTTCAACTCTAAAGGATCCCAAAGATTCCCTCTGGCTTGCTCTTTTCCCAGAAGGAACAGATTTCACTGAGCAGAAGTGCATACGCAGTCAGAAATATGCTGCTGAGAATGGATTACCTGTCCTAAAGCATGTCTTACTTCCAAAAACAAAGGGCTTCTGTGCCTCTTTAGAAGAATTGAGGGGCTCTTTGGATGCAGTTTATGATGTGACTATTGGCTACAAACCCAGCTGCCCTACTTTCTTCGACAATGCCTCTGGTGTGAACCCTTCTGAAGTTCATATGCATGTCCAACGTATCCCCCTTGACAATATTCCAACATCTGAAGACGAAGTTACAACTTGGTTAATGAACAGATTTCATCTCAAGGACCAGTTGCTTTCTGAATTTGATTCTCAAGGGCATTTTCCTCATGAAGGATCCGAAGGTGACCTTTCTACTCTGAAGTGCCTTCTTAATTTTGTGGCCGTGAGTATCATGACTGCAATATTTACATACCTAACCATTTTCTCTTCCATCTGGTTTAAAATTTACGTAACTTCGGTATGCGCTTATCTCACAGCCGCAACCATTTACAATTTTCGACCATCACCACTTTTTAGCCTTGTAAAAGGTTTGTTTAAGCACAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

379

Amino Acids

43.42

Weight (kDa)

8.87

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 85 - 220 4.3e-16 Acyltransferase
Acyltransf_C PF16076 253 - 321 3e-18 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 1 cut(s) 1062
AclWI GGATC 4 cut(s) 509, 522, 912, 925
AcoI YGGCCR 1 cut(s) 963
AcsI RAATTY 2 cut(s) 884, 1026
AcuI CTGAAG 3 cut(s) 792, 843, 962
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 2 cut(s) 90, 335
AfiI CCNNNNNNNGG 2 cut(s) 419, 914
AgsI TTSAA 3 cut(s) 11, 233, 504
AjnI CCWGG 2 cut(s) 345, 366
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 212, 729
AluI AGCT 2 cut(s) 212, 729
AlwI GGATC 4 cut(s) 509, 522, 912, 925
AoxI GGCC 2 cut(s) 218, 963
ApeKI GCWGC 2 cut(s) 599, 729
ApoI RAATTY 2 cut(s) 884, 1026
Asp700I GAANNNNTTC 2 cut(s) 273, 499
AspLEI GCGC 2 cut(s) 291, 1049
AspS9I GGNCC 2 cut(s) 343, 868
AsuHPI GGTGA 3 cut(s) 296, 938, 1080
AsuII TTCGAA 1 cut(s) 20
AvaII GGWCC 2 cut(s) 343, 868
BamHI GGATCC 2 cut(s) 514, 917
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 831
BbvI GCAGC 2 cut(s) 586, 716
BccI CCATC 2 cut(s) 1022, 1093
BceAI ACGGC 1 cut(s) 950
BciT130I CCWGG 2 cut(s) 347, 368
BciVI GTATCC 2 cut(s) 365, 806
BfuI GTATCC 2 cut(s) 365, 806
BisI GCNGC 3 cut(s) 600, 730, 1062
BlsI GCNGC 3 cut(s) 601, 731, 1063
Bme1390I CCNGG 2 cut(s) 347, 368
Bme18I GGWCC 2 cut(s) 343, 868
BmgT120I GGNCC 2 cut(s) 343, 868
BmiI GGNNCC 3 cut(s) 344, 516, 919
BmrFI CCNGG 2 cut(s) 347, 368
BmsI GCATC 3 cut(s) 16, 300, 682
BpiI GAAGAC 1 cut(s) 831
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 1 cut(s) 285
Bpu14I TTCGAA 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 848, 879
BsaAI YACGTR 1 cut(s) 1033
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 914
Bse1I ACTGG 1 cut(s) 871
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 347, 368
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 185, 336, 697
BseLI CCNNNNNNNGG 2 cut(s) 419, 914
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 4 cut(s) 47, 309, 558, 594
BseNI ACTGG 1 cut(s) 871
BseXI GCAGC 2 cut(s) 586, 716
BseYI CCCAGC 1 cut(s) 725
BshFI GGCC 2 cut(s) 220, 965
BslFI GGGAC 2 cut(s) 356, 375
BslI CCNNNNNNNGG 2 cut(s) 419, 914
BsmFI GGGAC 2 cut(s) 356, 375
BsmI GAATGC 2 cut(s) 104, 501
BsnI GGCC 2 cut(s) 220, 965
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 2 cut(s) 514, 917
BspACI CCGC 1 cut(s) 1062
BspANI GGCC 2 cut(s) 220, 965
BspCNI CTCAG 4 cut(s) 48, 310, 559, 595
BspHI TCATGA 3 cut(s) 108, 910, 975
BspLI GGNNCC 3 cut(s) 344, 516, 919
BspPI GGATC 4 cut(s) 509, 522, 912, 925
BspT104I TTCGAA 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 36
BsrI ACTGG 1 cut(s) 871
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 2 cut(s) 514, 917
BssNI GRCGYC 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 347, 368
Bst4CI ACNGT 2 cut(s) 173, 274
Bst6I CTCTTC 2 cut(s) 172, 1015
BstACI GRCGYC 1 cut(s) 364
BstBAI YACGTR 1 cut(s) 1033
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 5 cut(s) 56, 318, 567, 603, 1134
BstEII GGTNACC 1 cut(s) 926
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 3 cut(s) 185, 336, 697
BstHHI GCGC 2 cut(s) 291, 1049
BstKTI GATC 2 cut(s) 517, 920
BstMBI GATC 2 cut(s) 514, 917
BstMWI GCNNNNNNNGC 2 cut(s) 295, 496
BstNI CCWGG 2 cut(s) 347, 368
BstNSI RCATGY 3 cut(s) 490, 632, 788
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 2 cut(s) 345, 366
BstSNI TACGTA 1 cut(s) 1033
BstV1I GCAGC 2 cut(s) 586, 716
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 2 cut(s) 514, 917
BstYI RGATCY 2 cut(s) 514, 917
BsuI GTATCC 2 cut(s) 365, 806
BsuRI GGCC 2 cut(s) 220, 965
BtsCI GGATG 3 cut(s) 185, 336, 697
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 3 cut(s) 53, 350, 564
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 3 cut(s) 108, 910, 975
CfoI GCGC 2 cut(s) 291, 1049
Cfr13I GGNCC 2 cut(s) 343, 868
CseI GACGC 2 cut(s) 372, 479
Csp6I GTAC 2 cut(s) 89, 334
CviAII CATG 6 cut(s) 109, 487, 629, 785, 911, 976
CviQI GTAC 2 cut(s) 89, 334
DdeI CTNAG 5 cut(s) 56, 318, 567, 603, 1134
DpnI GATC 2 cut(s) 516, 919
DpnII GATC 2 cut(s) 514, 917
DraI TTTAAA 1 cut(s) 1024
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 2 cut(s) 172, 1015
EarI CTCTTC 2 cut(s) 172, 1015
Eco105I TACGTA 1 cut(s) 1033
Eco24I GRGCYC 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 343, 868
Eco57I CTGAAG 3 cut(s) 792, 843, 962
Eco91I GGTNACC 1 cut(s) 926
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoO109I RGGNCCY 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 345, 366
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 686
FaeI CATG 6 cut(s) 112, 490, 632, 788, 914, 979
FalI AAGNNNNNCTT 4 cut(s) 617, 649, 915, 947
FaqI GGGAC 2 cut(s) 356, 375
FatI CATG 6 cut(s) 108, 486, 628, 784, 910, 975
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 3 cut(s) 600, 730, 1062
FokI GGATG 3 cut(s) 172, 343, 704
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 3 cut(s) 600, 730, 1062
GlaI GCGC 2 cut(s) 290, 1048
GluI GCNGC 3 cut(s) 600, 730, 1062
GsaI CCCAGC 1 cut(s) 729
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 220, 965
HgaI GACGC 2 cut(s) 372, 479
HhaI GCGC 2 cut(s) 291, 1049
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 6 cut(s) 112, 490, 632, 788, 914, 979
Hin6I GCGC 2 cut(s) 289, 1047
HinP1I GCGC 2 cut(s) 289, 1047
HinfI GANTC 2 cut(s) 524, 890
HphI GGTGA 3 cut(s) 296, 938, 1080
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 6 cut(s) 591, 772, 823, 883, 922, 942
Hpy188III TCNNGA 4 cut(s) 109, 264, 911, 976
Hpy8I GTNNAC 1 cut(s) 763
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 8 cut(s) 27, 50, 199, 545, 777, 908, 917, 959
HpyCH4III ACNGT 2 cut(s) 173, 274
HpyCH4IV ACGT 2 cut(s) 793, 1032
HpyCH4V TGCA 6 cut(s) 29, 104, 579, 695, 784, 983
HpyF10VI GCNNNNNNNGC 2 cut(s) 295, 496
HpyF3I CTNAG 5 cut(s) 56, 318, 567, 603, 1134
HpySE526I ACGT 2 cut(s) 793, 1032
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 6 cut(s) 112, 490, 632, 788, 914, 979
HspAI GCGC 2 cut(s) 289, 1047
Kzo9I GATC 2 cut(s) 514, 917
Lsp1109I GCAGC 2 cut(s) 586, 716
LweI GCATC 3 cut(s) 16, 300, 682
MaeII ACGT 2 cut(s) 793, 1032
MaeIII GTNAC 5 cut(s) 181, 706, 832, 926, 1033
MalI GATC 2 cut(s) 516, 919
MboI GATC 2 cut(s) 514, 917
MboII GAAGA 6 cut(s) 184, 189, 683, 733, 836, 1002
MflI RGATCY 2 cut(s) 514, 917
MhlI GDGCHC 1 cut(s) 686
MluCI AATT 9 cut(s) 63, 147, 202, 479, 674, 884, 955, 1026, 1075
MmeI TCCRAC 2 cut(s) 814, 839
MnlI CCTC 8 cut(s) 313, 453, 463, 539, 672, 673, 763, 918
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 2 cut(s) 273, 499
MseI TTAA 7 cut(s) 47, 390, 482, 845, 954, 1023, 1119
MslI CAYNNNNRTG 2 cut(s) 452, 783
MspA1I CMGCKG 1 cut(s) 729
MspR9I CCNGG 2 cut(s) 347, 368
Mva1269I GAATGC 2 cut(s) 104, 501
MvaI CCWGG 2 cut(s) 347, 368
MwoI GCNNNNNNNGC 2 cut(s) 295, 496
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 514, 917
NlaIII CATG 6 cut(s) 112, 490, 632, 788, 914, 979
NlaIV GGNNCC 3 cut(s) 344, 516, 919
NmuCI GTSAC 2 cut(s) 706, 926
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 3 cut(s) 490, 632, 788
NspV TTCGAA 1 cut(s) 20
PagI TCATGA 3 cut(s) 108, 910, 975
PctI GAATGC 2 cut(s) 104, 501
PdmI GAANNNNTTC 2 cut(s) 273, 499
PfeI GAWTC 2 cut(s) 524, 890
PkrI GCNGC 3 cut(s) 601, 731, 1063
Ppu21I YACGTR 1 cut(s) 1033
PpuMI RGGWCCY 1 cut(s) 343
PsiI TTATAA 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 345, 366
PspEI GGTNACC 1 cut(s) 926
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 2 cut(s) 345, 366
PspN4I GGNNCC 3 cut(s) 344, 516, 919
PspPI GGNCC 2 cut(s) 343, 868
PspPPI RGGWCCY 1 cut(s) 343
PsuI RGATCY 2 cut(s) 514, 917
PvuII CAGCTG 1 cut(s) 729
RsaI GTAC 2 cut(s) 90, 335
RsaNI GTAC 2 cut(s) 89, 334
RseI CAYNNNNRTG 2 cut(s) 452, 783
SaqAI TTAA 7 cut(s) 47, 390, 482, 845, 954, 1023, 1119
SatI GCNGC 3 cut(s) 600, 730, 1062
Sau3AI GATC 2 cut(s) 514, 917
Sau96I GGNCC 2 cut(s) 343, 868
ScrFI CCNGG 2 cut(s) 347, 368
SduI GDGCHC 1 cut(s) 686
SfaNI GCATC 3 cut(s) 16, 300, 682
SfuI TTCGAA 1 cut(s) 20
SinI GGWCC 2 cut(s) 343, 868
SmiMI CAYNNNNRTG 2 cut(s) 452, 783
SmlI CTYRAG 2 cut(s) 863, 894
SmoI CTYRAG 2 cut(s) 863, 894
SnaBI TACGTA 1 cut(s) 1033
Sse9I AATT 9 cut(s) 63, 147, 202, 479, 674, 884, 955, 1026, 1075
SsiI CCGC 1 cut(s) 1062
SspI AATATT 2 cut(s) 811, 987
StyD4I CCNGG 2 cut(s) 345, 366
TaaI ACNGT 2 cut(s) 173, 274
TaiI ACGT 2 cut(s) 796, 1035
TaqI TCGA 5 cut(s) 20, 474, 493, 744, 1081
TasI AATT 9 cut(s) 63, 147, 202, 479, 674, 884, 955, 1026, 1075
TatI WGTACW 2 cut(s) 88, 333
TauI GCSGC 1 cut(s) 1064
TfiI GAWTC 2 cut(s) 524, 890
Tru1I TTAA 7 cut(s) 47, 390, 482, 845, 954, 1023, 1119
Tru9I TTAA 7 cut(s) 47, 390, 482, 845, 954, 1023, 1119
TscAI CASTG 3 cut(s) 60, 357, 571
TseFI GTSAC 2 cut(s) 706, 926
TseI GCWGC 2 cut(s) 599, 729
Tsp45I GTSAC 2 cut(s) 706, 926
TspDTI ATGAA 9 cut(s) 47, 97, 419, 436, 492, 767, 848, 863, 927
TspRI CASTG 3 cut(s) 60, 357, 571
VpaK11BI GGWCC 2 cut(s) 343, 868
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 2 cut(s) 884, 1026
XceI RCATGY 3 cut(s) 490, 632, 788
XmnI GAANNNNTTC 2 cut(s) 273, 499
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.