RLG00000014390

1-acyl-sn-glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009022
Physical Location & Seq
Reverse (-)
52467214 .. 52470025
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014390

Sequence Viewer

Length: 1137 bp
ATGGATGTTCAAAGGCCTTCAAATAATGCCATGAGTGCCCGTCCGTTAACTCCACTACGAGCAATTAGGGGTGTGGTCTGCTTAATTGTGCTTGTTTTGACTGCCTTCATGATGTTAGTGTATTTTGGCTTCATGGGCGCTGTTATAGTTAGGATTTTCAGCATACCTTACAGTAGAAGAATAACAGCTGTCTTCTATGGTGCTTGGATAGCTTTATGGCCTGTTCTTTTTGAAAAGATAAACGGGACTAAAGTTATCTTTTCTGGAGAAACTGTTCCCACAGGGGAACGCATTTTGCTTATTTCAAATCATAGAACTGAGGTGGACTGGATGTATTTGTGGGACTTGGCATTGCGCAAAGGACGGCAGGGATACATAAAGTATATCCTTAAAAGTAGTTTGATGAAACTTCCTGTATTTGGTTGGACGTTTCACATAATGGAGTACATTTCCGTGGAGAGAAAGTGGGAGGTCGATGAACCAAATATGCGTCGAATGCTTTCAACTTTAAACGATCCTCAAGATTCTCTCTGGCTTGCTCTTTTCCCAGAAGGAACAGATTTCACTGAGCAGAAGTGCATCCGTAATCAGAAGTATGCTGCTGAACATGGCTTACCTGTACTAAAGCATGTCTTGCTTCCAAAAACAAAGGGCTTCTATACATGTTTAGAAGAATTAAGGGGATCTTTGGATGCAGTTTATGATGTGACTATCGGCTATAGGCCTAGTAGTCCGACTTTCTTCGACAATGCCGCTGGGGTGAACCCTACTGAAGTTCATATGCATGTCCGACGTATCCCACTTGATAATATTCCCTCATCTGAAGACGAGGTTTCGACTTGGCTAATGAATACATTTCATTTCAAAGACCAGTTGCTCTCTGATTTTCATTCTCAAGGCCATTTTCCCCATGAAGGAACAGAAGGTGAACTCTCTACTCTGAAGTGCCTTATCAATTTTATGGCAGTAATTATCGCGACAGGAACGTGTACATACCTAACCCTTTTCTCGTCCATCTGGTTTAAGATATATGTATCTTCCGTTTGTGCATATCTCATATCTGCTACTTACTTCAATATTCGACCATTGCCCATTGTTAGCCTTTTGAAAGGCTTGTTTAATTGTAAATCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransf_C Acyltransferase

Protein Analysis

379

Amino Acids

43.23

Weight (kDa)

8.57

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 85 - 208 2.5e-17 Acyltransferase
Acyltransf_C PF16076 253 - 322 9.7e-19 Acyltransferase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009022)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850 AT3G18850
fragaria_vesca FvH4_2g08140
malus_domestica MD10G1081700.v1.1
prunus_persica Prupe.8G103400_v2.0.a1 Prupe.8G103400_v2.0.a1
pyrus_communis pycom10g06460
rosa_chinensis RchiOBHm_Chr6g0262951
rosa_laevigata RLG00000014390 RLG00000014405
rosa_multiflora Rmu_co8164910.1_g000001
rosa_roxburghii Rroxscaffold_7G00204850
rosa_rugosa Rorug06G0001800
rosa_samantha Rh6AG121200 Rh6BG114800 Rh6CG113200 Rh6DG102500
rosa_wichuraiana Rw6G010400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 356
AccII CGCG 1 cut(s) 977
AciI CCGC 1 cut(s) 753
AclWI GGATC 2 cut(s) 509, 691
AcuI CTGAAG 3 cut(s) 792, 843, 962
AfaI GTAC 3 cut(s) 446, 621, 991
AfiI CCNNNNNNNGG 2 cut(s) 419, 914
AflIII ACRYGT 2 cut(s) 662, 986
AgsI TTSAA 8 cut(s) 11, 21, 233, 306, 504, 865, 1075, 1108
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 2 cut(s) 188, 212
AluI AGCT 2 cut(s) 188, 212
AlwI GGATC 2 cut(s) 509, 691
AoxI GGCC 4 cut(s) 14, 218, 722, 898
ApeKI GCWGC 1 cut(s) 599
Asp700I GAANNNNTTC 2 cut(s) 273, 499
AspLEI GCGC 2 cut(s) 140, 357
AsuHPI GGTGA 2 cut(s) 772, 938
BaeGI GKGCMC 1 cut(s) 40
BarI GAAGNNNNNNTAC 2 cut(s) 113, 145
BbsI GAAGAC 2 cut(s) 184, 831
BbvI GCAGC 1 cut(s) 586
BccI CCATC 1 cut(s) 1022
BceAI ACGGC 1 cut(s) 380
BciVI GTATCC 2 cut(s) 365, 806
BfaI CTAG 1 cut(s) 726
BfmI CTRYAG 1 cut(s) 718
BfoI RGCGCY 1 cut(s) 141
BfuI GTATCC 2 cut(s) 365, 806
BisI GCNGC 2 cut(s) 600, 753
BlsI GCNGC 2 cut(s) 601, 754
BmsI GCATC 2 cut(s) 588, 682
BpiI GAAGAC 2 cut(s) 184, 831
BpmI CTGGAG 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 504, 879
BsaJI CCNNGG 1 cut(s) 453
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 449, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 914
Bse1I ACTGG 2 cut(s) 332, 871
Bse3DI GCAATG 2 cut(s) 350, 1085
BseDI CCNNGG 1 cut(s) 453
BseGI GGATG 4 cut(s) 10, 336, 579, 697
BseLI CCNNNNNNNGG 2 cut(s) 419, 914
BseMI GCAATG 2 cut(s) 350, 1085
BseMII CTCAG 2 cut(s) 309, 558
BseNI ACTGG 2 cut(s) 332, 871
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 1 cut(s) 586
BseYI CCCAGC 1 cut(s) 755
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 4 cut(s) 16, 220, 724, 900
BslFI GGGAC 2 cut(s) 259, 356
BslI CCNNNNNNNGG 2 cut(s) 419, 914
BsmFI GGGAC 2 cut(s) 259, 356
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 4 cut(s) 16, 220, 724, 900
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 989
Bsp143I GATC 2 cut(s) 514, 683
Bsp68I TCGCGA 1 cut(s) 977
BspACI CCGC 1 cut(s) 753
BspANI GGCC 4 cut(s) 16, 220, 724, 900
BspCNI CTCAG 2 cut(s) 310, 559
BspFNI CGCG 1 cut(s) 977
BspHI TCATGA 1 cut(s) 108
BspPI GGATC 2 cut(s) 509, 691
BsrDI GCAATG 2 cut(s) 350, 1085
BsrGI TGTACA 1 cut(s) 989
BsrI ACTGG 2 cut(s) 332, 871
BssECI CCNNGG 1 cut(s) 453
BssMI GATC 2 cut(s) 514, 683
Bst4CI ACNGT 2 cut(s) 173, 274
BstAPI GCANNNNNTGC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 3 cut(s) 318, 567, 1134
BstDSI CCRYGG 1 cut(s) 453
BstF5I GGATG 4 cut(s) 10, 336, 579, 697
BstFNI CGCG 1 cut(s) 977
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 357
BstKTI GATC 2 cut(s) 517, 686
BstMBI GATC 2 cut(s) 514, 683
BstMWI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
BstNSI RCATGY 3 cut(s) 632, 666, 788
BstSFI CTRYAG 1 cut(s) 718
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 1 cut(s) 586
BstV2I GAAGAC 2 cut(s) 184, 831
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuI GTATCC 2 cut(s) 365, 806
BsuRI GGCC 4 cut(s) 16, 220, 724, 900
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 4 cut(s) 10, 336, 579, 697
BtsIMutI CAGTG 1 cut(s) 564
BtuMI TCGCGA 1 cut(s) 977
Cac8I GCNNGC 1 cut(s) 537
CciI TCATGA 1 cut(s) 108
CfoI GCGC 2 cut(s) 140, 357
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 445, 620, 990
CviAII CATG 8 cut(s) 31, 109, 133, 608, 629, 663, 785, 911
CviQI GTAC 3 cut(s) 445, 620, 990
DdeI CTNAG 3 cut(s) 318, 567, 1134
DpnI GATC 2 cut(s) 516, 685
DpnII GATC 2 cut(s) 514, 683
DraI TTTAAA 1 cut(s) 510
Eco147I AGGCCT 2 cut(s) 16, 724
Eco57I CTGAAG 3 cut(s) 792, 843, 962
EcoT22I ATGCAT 1 cut(s) 786
FaeI CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
FalI AAGNNNNNCTT 4 cut(s) 617, 649, 670, 702
FaqI GGGAC 2 cut(s) 259, 356
FatI CATG 8 cut(s) 30, 108, 132, 607, 628, 662, 784, 910
FauNDI CATATG 1 cut(s) 780
Fnu4HI GCNGC 2 cut(s) 600, 753
FokI GGATG 4 cut(s) 17, 343, 566, 704
Fsp4HI GCNGC 2 cut(s) 600, 753
FspBI CTAG 1 cut(s) 726
FspI TGCGCA 1 cut(s) 356
GlaI GCGC 2 cut(s) 139, 356
GluI GCNGC 2 cut(s) 600, 753
GsaI CCCAGC 1 cut(s) 759
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 4 cut(s) 16, 220, 724, 900
HgaI GACGC 1 cut(s) 479
HhaI GCGC 2 cut(s) 140, 357
Hin1II CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
Hin6I GCGC 2 cut(s) 138, 355
HinP1I GCGC 2 cut(s) 138, 355
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 524
HpaI GTTAAC 1 cut(s) 48
HphI GGTGA 2 cut(s) 772, 938
Hpy166II GTNNAC 5 cut(s) 48, 325, 763, 929, 990
Hpy188I TCNGA 6 cut(s) 591, 735, 791, 823, 883, 942
Hpy188III TCNNGA 4 cut(s) 109, 264, 521, 976
Hpy8I GTNNAC 5 cut(s) 48, 325, 763, 929, 990
Hpy99I CGWCG 2 cut(s) 495, 795
HpyAV CCTTC 5 cut(s) 27, 115, 545, 908, 917
HpyCH4III ACNGT 2 cut(s) 173, 274
HpyCH4IV ACGT 3 cut(s) 428, 793, 986
HpyCH4V TGCA 4 cut(s) 579, 695, 784, 1049
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
HpyF3I CTNAG 3 cut(s) 318, 567, 1134
HpySE526I ACGT 3 cut(s) 428, 793, 986
Hsp92II CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
HspAI GCGC 2 cut(s) 138, 355
KspAI GTTAAC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 514, 683
Lsp1109I GCAGC 1 cut(s) 586
LweI GCATC 2 cut(s) 588, 682
MaeI CTAG 1 cut(s) 726
MaeII ACGT 3 cut(s) 428, 793, 986
MaeIII GTNAC 1 cut(s) 706
MalI GATC 2 cut(s) 516, 685
MboI GATC 2 cut(s) 514, 683
MboII GAAGA 6 cut(s) 184, 189, 683, 733, 836, 1029
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
MmeI TCCRAC 3 cut(s) 404, 758, 814
MnlI CCTC 5 cut(s) 313, 463, 528, 823, 826
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 2 cut(s) 273, 499
MseI TTAA 7 cut(s) 47, 83, 390, 509, 677, 1023, 1119
MslI CAYNNNNRTG 2 cut(s) 452, 783
MspA1I CMGCKG 2 cut(s) 188, 755
Mva1269I GAATGC 1 cut(s) 501
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 5 cut(s) 35, 135, 209, 496, 634
NdeI CATATG 1 cut(s) 780
NdeII GATC 2 cut(s) 514, 683
NlaIII CATG 8 cut(s) 34, 112, 136, 611, 632, 666, 788, 914
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 977
NsbI TGCGCA 1 cut(s) 356
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 3 cut(s) 632, 666, 788
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 2 cut(s) 16, 724
PciI ACATGT 1 cut(s) 662
PctI GAATGC 1 cut(s) 501
PdmI GAANNNNTTC 2 cut(s) 273, 499
PfeI GAWTC 1 cut(s) 524
PkrI GCNGC 2 cut(s) 601, 754
PscI ACATGT 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 755
PsrI GAACNNNNNNTAC 2 cut(s) 597, 629
PsuI RGATCY 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 188
RruI TCGCGA 1 cut(s) 977
RsaI GTAC 3 cut(s) 446, 621, 991
RsaNI GTAC 3 cut(s) 445, 620, 990
RseI CAYNNNNRTG 2 cut(s) 452, 783
SaqAI TTAA 7 cut(s) 47, 83, 390, 509, 677, 1023, 1119
SatI GCNGC 2 cut(s) 600, 753
Sau3AI GATC 2 cut(s) 514, 683
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 2 cut(s) 588, 682
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 452, 783
SmlI CTYRAG 2 cut(s) 519, 894
SmoI CTYRAG 2 cut(s) 519, 894
Sse9I AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
SseBI AGGCCT 2 cut(s) 16, 724
SsiI CCGC 1 cut(s) 753
SspI AATATT 2 cut(s) 811, 1078
SspMI CTAG 1 cut(s) 726
StuI AGGCCT 2 cut(s) 16, 724
TaaI ACNGT 2 cut(s) 173, 274
TaiI ACGT 3 cut(s) 431, 796, 989
TaqI TCGA 5 cut(s) 474, 493, 744, 836, 1081
TasI AATT 6 cut(s) 63, 84, 674, 955, 969, 1120
TatI WGTACW 3 cut(s) 444, 619, 989
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 7 cut(s) 47, 83, 390, 509, 677, 1023, 1119
Tru9I TTAA 7 cut(s) 47, 83, 390, 509, 677, 1023, 1119
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 9 cut(s) 97, 121, 419, 492, 767, 848, 863, 878, 927
TspGWI ACGGA 4 cut(s) 33, 442, 572, 1030
TspRI CASTG 1 cut(s) 571
XceI RCATGY 3 cut(s) 632, 666, 788
XmnI GAANNNNTTC 2 cut(s) 273, 499
XspI CTAG 1 cut(s) 726
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.