Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012574

Physical Location & Seq

Genomic Coordinates Forward (+)

8480655 .. 8485268

Gene Structure 4614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTGAGGGATAGTGCCTTTTATAATATATTGGGTATCAATGTTGAAGCCTCTGAAACTGAGATAAAAAATGCTTATTATCAGAAGGCAACAGAAGCTCACCCTGATAAAAATCCTGGAGATGCAAAGGCTGCCGAAGATTTTGCAGCACTTGCTGAAGCTTTTCAGGTCTTAATGGATCCTGACAAGCGTGGATGGTATAACAAGCATGGAAAGCTATGCATACCACAGGACTTCTGGTTACACAGTTATTGTGTGTATGGGATGTTTTTTGGGAGTGAATGCTTTAAAGATTACATCGGTGAATTTGCTTTTACCACTTTCTCATCATTTCTTGAAATGGAAGAAGAGACGGAGGATCCTGAAGTCCGAAGGAAGAGAGCTTGGGAGAAGACACAGGCATTGTTGAAGGAAAGGCATGAAAAGATTACAAAGGTTATGATAGATCGCATTCAACCATATGTTGATGGTCATATGGATGAGTTTGAAAAATCAGTCGATTCAGAAGCCCGGCGCCTATCAACAGCTGCCTTTGGAGAGTGTCTTCTTTTTACACTTGGTGTCATATACATTGCTAAAGCAGCAAAAGAACTTAAAGGGAAGGAGGAAGCCGGGAGAATAAGGTGGATCAAAGTTAAAGGTCCCAAAGGATTCGAGTTGAGGTCACAAATACATGCCGCTAAAGAGTCTGATCGTACAGCAGGACAACGAGATCGTCCAAACAATTCTCAAGCTAACAAGGAAGATGATTTACGGCGAGAAATTTTCTGTTACCTAGACAACTCGAGGCTTCGTAATACATGGAGTATTAATGTGACTGATATTGAGTTGTGTTTGTCATATATCTGCAAAGCAATACTTAAAGACTCCACTGTATCTAAAGATGTTCTGAGGCTTCGGGCAGAAGCATTGGATAAGCTGGGAAGAATCTTTAAAGGTACGAGTCCTCCTTACCATAGAGAGTACGGTATCTGCGTTGAAGATGAACAGGAGAATGAAAATGAGGACTCTGATTTTTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ-X

Protein Analysis

342

Amino Acids

39.33

Weight (kDa)

5.35

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	7 - 68	3.4e-21	DnaJ domain
DnaJ-X	PF14308	137 - 319	3.2e-30	X-domain of DnaJ-containing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012574)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09550 FvH4_2g09550
rosa_chinensis	RchiOBHm_Chr6g0265841
rosa_laevigata	RLG00000014154
rosa_roxburghii	Rroxscaffold_7G00202320
rosa_rugosa	Rorug06G0020000 Rorug06G0020100.1 Rorug06G0020200 Rorug06G0020200 Rorug06G0020300.1 Rorug06G0020400 Rorug06G0020500 Rorug06G0020600.1 Rorug06G0020700
rosa_samantha	Rh6AG142300 Rh6BG142200 Rh6CG138800 Rh6DG126100
rosa_wichuraiana	Rw6G012290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	513
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	5 cut(s)	173, 186, 353, 366, 635
AcsI	RAATTY	2 cut(s)	305, 762
AcuI	CTGAAG	2 cut(s)	177, 384
AcyI	GRCGYC	1 cut(s)	514
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	3 cut(s)	697, 940, 965
AgsI	TTSAA	6 cut(s)	47, 338, 409, 455, 488, 980
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	7 cut(s)	98, 161, 217, 383, 527, 734, 919
AluI	AGCT	7 cut(s)	98, 161, 217, 383, 527, 734, 919
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	5 cut(s)	173, 186, 353, 366, 635
Ama87I	CYCGRG	1 cut(s)	784
ApeKI	GCWGC	4 cut(s)	131, 146, 527, 581
ApoI	RAATTY	2 cut(s)	305, 762
AseI	ATTAAT	1 cut(s)	810
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	641
AsuC2I	CCSGG	2 cut(s)	511, 613
AsuHPI	GGTGA	3 cut(s)	16, 92, 314
AvaI	CYCGRG	1 cut(s)	784
AvaII	GGWCC	1 cut(s)	641
BamHI	GGATCC	2 cut(s)	178, 358
BanI	GGYRCC	1 cut(s)	513
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbsI	GAAGAC	2 cut(s)	398, 536
BbvI	GCAGC	4 cut(s)	118, 158, 514, 593
BccI	CCATC	2 cut(s)	189, 461
BceAI	ACGGC	1 cut(s)	770
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	2 cut(s)	511, 613
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	776
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	5 cut(s)	132, 147, 528, 582, 678
BlsI	GCNGC	5 cut(s)	133, 148, 529, 583, 679
Bme1390I	CCNGG	3 cut(s)	117, 511, 613
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	784
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	4 cut(s)	180, 360, 515, 643
BmrFI	CCNGG	3 cut(s)	117, 511, 613
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	398, 536
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	511, 613
BsaBI	GATNNNNATC	1 cut(s)	111
BsaHI	GRCGYC	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bse3DI	GCAATG	1 cut(s)	570
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	3 cut(s)	200, 270, 484
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	51, 881
BseXI	GCAGC	4 cut(s)	118, 158, 514, 593
BseYI	CCCAGC	1 cut(s)	919
BshNI	GGYRCC	1 cut(s)	513
BsiHKCI	CYCGRG	1 cut(s)	784
BsiSI	CCGG	2 cut(s)	511, 612
BslFI	GGGAC	1 cut(s)	627
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	2 cut(s)	287, 450
BsoBI	CYCGRG	1 cut(s)	784
Bsp143I	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
BspACI	CCGC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	52, 882
BspLI	GGNNCC	4 cut(s)	180, 360, 515, 643
BspPI	GGATC	5 cut(s)	173, 186, 353, 366, 635
BspT107I	GGYRCC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	570
BssMI	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
BssNI	GRCGYC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	3 cut(s)	248, 874, 968
Bst6I	CTCTTC	2 cut(s)	342, 371
BstACI	GRCGYC	1 cut(s)	514
BstAPI	GCANNNNNTGC	2 cut(s)	131, 152
BstDEI	CTNAG	2 cut(s)	60, 890
BstF5I	GGATG	3 cut(s)	200, 270, 484
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	6 cut(s)	181, 361, 448, 630, 694, 715
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 131, 152, 214, 581
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	3 cut(s)	115, 509, 611
BstV1I	GCAGC	4 cut(s)	118, 158, 514, 593
BstV2I	GAAGAC	2 cut(s)	398, 536
BstX2I	RGATCY	2 cut(s)	178, 358
BstYI	RGATCY	2 cut(s)	178, 358
BtsCI	GGATG	3 cut(s)	200, 270, 484
BtsIMutI	CAGTG	1 cut(s)	870
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	696, 939, 964
CviAII	CATG	4 cut(s)	209, 419, 674, 801
CviQI	GTAC	3 cut(s)	696, 939, 964
DdeI	CTNAG	2 cut(s)	60, 890
DinI	GGCGCC	1 cut(s)	515
DpnI	GATC	6 cut(s)	180, 360, 447, 629, 693, 714
DpnII	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
DraI	TTTAAA	2 cut(s)	289, 934
DraIII	CACNNNGTG	1 cut(s)	560
Eam1104I	CTCTTC	2 cut(s)	342, 371
EarI	CTCTTC	2 cut(s)	342, 371
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	177, 384
Eco88I	CYCGRG	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	515
EheI	GGCGCC	1 cut(s)	515
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	4 cut(s)	212, 422, 677, 804
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	4 cut(s)	208, 418, 673, 800
FauNDI	CATATG	2 cut(s)	460, 474
Fnu4HI	GCNGC	5 cut(s)	132, 147, 528, 582, 678
FokI	GGATG	3 cut(s)	207, 277, 491
Fsp4HI	GCNGC	5 cut(s)	132, 147, 528, 582, 678
FspBI	CTAG	1 cut(s)	776
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	5 cut(s)	132, 147, 528, 582, 678
GsaI	CCCAGC	1 cut(s)	923
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	517
HapII	CCGG	2 cut(s)	511, 612
HhaI	GCGC	1 cut(s)	516
Hin1I	GRCGYC	1 cut(s)	514
Hin1II	CATG	4 cut(s)	212, 422, 677, 804
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	7 cut(s)	500, 651, 686, 866, 927, 943, 1007
HpaII	CCGG	2 cut(s)	511, 612
HphI	GGTGA	3 cut(s)	16, 92, 314
Hpy188I	TCNGA	8 cut(s)	55, 84, 371, 505, 691, 891, 1012, 1021
Hpy188III	TCNNGA	3 cut(s)	182, 335, 362
HpyAV	CCTTC	4 cut(s)	79, 366, 403, 595
HpyCH4III	ACNGT	3 cut(s)	248, 874, 968
HpyCH4V	TGCA	4 cut(s)	125, 146, 222, 849
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 131, 152, 214, 581
HpyF3I	CTNAG	2 cut(s)	60, 890
Hsp92I	GRCGYC	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	212, 422, 677, 804
HspAI	GCGC	1 cut(s)	514
KasI	GGCGCC	1 cut(s)	513
Kzo9I	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
Lsp1109I	GCAGC	4 cut(s)	118, 158, 514, 593
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	776
MaeIII	GTNAC	4 cut(s)	240, 663, 770, 814
MalI	GATC	6 cut(s)	180, 360, 447, 629, 693, 714
MboI	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
MboII	GAAGA	9 cut(s)	149, 356, 359, 388, 403, 536, 755, 936, 992
MflI	RGATCY	2 cut(s)	178, 358
MluCI	AATT	3 cut(s)	305, 724, 762
Mly113I	GGCGCC	1 cut(s)	514
MlyI	GAGTC	4 cut(s)	695, 860, 952, 1001
MnlI	CCTC	8 cut(s)	61, 349, 598, 654, 780, 885, 957, 997
Mph1103I	ATGCAT	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	7 cut(s)	173, 288, 594, 636, 810, 861, 933
MslI	CAYNNNNRTG	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	511, 612
MspR9I	CCNGG	3 cut(s)	117, 511, 613
Mva1269I	GAATGC	2 cut(s)	287, 450
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	5 cut(s)	95, 131, 152, 214, 581
NarI	GGCGCC	1 cut(s)	514
NciI	CCSGG	2 cut(s)	511, 613
NdeI	CATATG	2 cut(s)	460, 474
NdeII	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
NlaIII	CATG	4 cut(s)	212, 422, 677, 804
NlaIV	GGNNCC	4 cut(s)	180, 360, 515, 643
NmuCI	GTSAC	2 cut(s)	663, 814
NsiI	ATGCAT	1 cut(s)	224
NspI	RCATGY	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	784
PcsI	WCGNNNNNNNCGW	1 cut(s)	972
PctI	GAATGC	2 cut(s)	287, 450
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	3 cut(s)	500, 651, 927
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	5 cut(s)	133, 148, 529, 583, 679
PleI	GAGTC	4 cut(s)	694, 860, 951, 1001
PluTI	GGCGCC	1 cut(s)	517
PpsI	GAGTC	4 cut(s)	694, 860, 951, 1001
PpuMI	RGGWCCY	1 cut(s)	641
PshBI	ATTAAT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	115
PspFI	CCCAGC	1 cut(s)	919
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	180, 360, 515, 643
PspPI	GGNCC	1 cut(s)	641
PspPPI	RGGWCCY	1 cut(s)	641
PspXI	VCTCGAGB	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	178, 358
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	3 cut(s)	697, 940, 965
RsaNI	GTAC	3 cut(s)	696, 939, 964
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	7 cut(s)	173, 288, 594, 636, 810, 861, 933
SatI	GCNGC	5 cut(s)	132, 147, 528, 582, 678
Sau3AI	GATC	6 cut(s)	178, 358, 445, 627, 691, 712
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	4 cut(s)	695, 860, 952, 1001
ScrFI	CCNGG	3 cut(s)	117, 511, 613
SfaNI	GCATC	1 cut(s)	112
SfoI	GGCGCC	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	784
SinI	GGWCC	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	729, 784
SmoI	CTYRAG	2 cut(s)	729, 784
Sse9I	AATT	3 cut(s)	305, 724, 762
SsiI	CCGC	1 cut(s)	678
SspDI	GGCGCC	1 cut(s)	513
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	3 cut(s)	115, 509, 611
TaaI	ACNGT	3 cut(s)	248, 874, 968
TaqI	TCGA	3 cut(s)	498, 654, 785
TasI	AATT	3 cut(s)	305, 724, 762
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	3 cut(s)	500, 651, 927
Tru1I	TTAA	7 cut(s)	173, 288, 594, 636, 810, 861, 933
Tru9I	TTAA	7 cut(s)	173, 288, 594, 636, 810, 861, 933
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	2 cut(s)	663, 814
TseI	GCWGC	4 cut(s)	131, 146, 527, 581
Tsp45I	GTSAC	2 cut(s)	663, 814
TspDTI	ATGAA	3 cut(s)	435, 999, 1011
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	641
VspI	ATTAAT	1 cut(s)	810
XapI	RAATTY	2 cut(s)	305, 762
XceI	RCATGY	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XhoI	CTCGAG	1 cut(s)	784
XmnI	GAANNNNTTC	1 cut(s)	162
XspI	CTAG	1 cut(s)	776
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.