Rorug06G0020200

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012574
Physical Location & Seq
Reverse (-)
2538946 .. 2542177
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0020200.1

Sequence Viewer

Length: 1086 bp
ATGGTGCCATTTCAGGTCATTCCTAGCACCTTCTGGATGGAGCGCCAGAGGTTCCCAAGGGATGGTGAGTTAAAGAATCCTTACAATTCATCGGTGGAAGTTTGTGGATCAAGTAGTGGACCTGCAATATCAGTAGCTGCTAATATGGTTTCTGTGACATTAGGGACGGAGACTGACAGCTCCATTATCTGTCCGGCTAGCTTTAACTCTGTGGTGGGCATCAAACCCACTGTTGGTCTCACTAGTCGAGCAGGAGTCATACCAATCAGTCCAAGACAGGACACAGTTGGGCCGATTTGTAGGACTGTAGCGGATGCTGTTCACGTCCTTGATATCATTGTTGGCATTGATAGGAATGATAATGCAACAAGTGAAGCATCAAAGTACATCCCAGTGGGTGGCTATGGACAGTTTCTCAAGCATAATGGCCTCAAAGGAAAGAGACTGGGGATAGTAAATATGTTATTTGATTCAATCAAGGACGATGCTTTTCTGAAACAAACTTTTGTGCAGCATTTTACCACACTGAGGAAACAAGGTGCAGTTTTGGTTGACAATCTTGAAATAGCCAATATTGAAGATGTTCTGGATTCTCATTCAAGTGGAGAATTTGATGCTATATTAGCTGAATTCAAAATAGCCTTGAATGAGTACCTTAGTGACCTAGTAAAATCTCCAGTGAAGTCCTTAAGGGAGGTGATAGAGTTCAACAAGAATCATTCAAAGGTGGAAAATATCAATGAATATGGGCAAGATGTCTTCGAATTAGCTGAGAAGACTAATGGGATGGGACCAAAAGAGCAGGAGGCATTGTCAAATTTAGAAAGACTATCTAAACAGGGGTTCAAGAAGTTGATGGCCGATCATAGCCTAGATGCCTTGGTGGCTTATGCTAACAGTGCTTCTAGTATCCTCGCAATTGGTGGTTTTCCGGGCATTGTTGTGCCGGCAGGATATCATAACACTAAAAAGTATCCTTTTGGGATCTGCTTTGGGGGACTCAAGGGTTCAGAGCCAAAGCTGATTGAGATCGCCTATGCCTTTGAGCAAGCAACTAAGATAAGGAGAAAGCCTCCTCTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

361

Amino Acids

39.22

Weight (kDa)

6.41

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidase PF01425 22 - 295 2.5e-37 Amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 62, 398
AciI CCGC 1 cut(s) 311
AclWI GGATC 2 cut(s) 115, 992
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 3 cut(s) 608, 629, 817
AfaI GTAC 2 cut(s) 386, 653
AfiI CCNNNNNNNGG 4 cut(s) 62, 233, 398, 528
AflII CTTAAG 1 cut(s) 688
AgsI TTSAA 9 cut(s) 474, 563, 578, 600, 634, 646, 709, 723, 847
AhlI ACTAGT 1 cut(s) 242
AjiI CACGTC 1 cut(s) 325
AluBI AGCT 6 cut(s) 137, 180, 201, 626, 770, 1021
AluI AGCT 6 cut(s) 137, 180, 201, 626, 770, 1021
Alw26I GTCTC 3 cut(s) 164, 242, 436
AlwI GGATC 2 cut(s) 115, 992
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 3 cut(s) 290, 427, 858
ApeKI GCWGC 2 cut(s) 137, 511
ApoI RAATTY 3 cut(s) 608, 629, 817
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 3 cut(s) 119, 290, 791
AsuC2I CCSGG 1 cut(s) 933
AsuHPI GGTGA 2 cut(s) 77, 709
AsuII TTCGAA 1 cut(s) 762
AsuNHI GCTAGC 1 cut(s) 197
AvaII GGWCC 2 cut(s) 119, 791
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 751, 782
BbvI GCAGC 2 cut(s) 124, 523
BccI CCATC 4 cut(s) 31, 56, 781, 850
BciVI GTATCC 2 cut(s) 920, 984
BcnI CCSGG 1 cut(s) 933
BcoDI GTCTC 3 cut(s) 164, 242, 436
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 7 cut(s) 24, 198, 243, 665, 872, 906, 1079
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 46
BfrI CTTAAG 1 cut(s) 688
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 2 cut(s) 920, 984
BglI GCCNNNNNGGC 1 cut(s) 884
BisI GCNGC 2 cut(s) 138, 512
BlsI GCNGC 2 cut(s) 139, 513
Bme1390I CCNGG 1 cut(s) 933
Bme18I GGWCC 2 cut(s) 119, 791
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 3 cut(s) 119, 290, 791
BmiI GGNNCC 3 cut(s) 6, 53, 792
BmrFI CCNGG 1 cut(s) 933
BmrI ACTGGG 2 cut(s) 386, 455
BmsI GCATC 6 cut(s) 228, 304, 386, 475, 604, 865
BmtI GCTAGC 1 cut(s) 201
BmuI ACTGGG 2 cut(s) 386, 455
BpiI GAAGAC 2 cut(s) 751, 782
BplI GAGNNNNNCTC 1 cut(s) 1057
BpmI CTGGAG 1 cut(s) 660
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 401, 986
BpuMI CCSGG 1 cut(s) 933
BsaBI GATNNNNATC 1 cut(s) 1028
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 56, 879
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 233, 398, 528
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 3 cut(s) 392, 450, 677
Bse8I GATNNNNATC 1 cut(s) 1028
BseDI CCNNGG 2 cut(s) 56, 879
BseGI GGATG 5 cut(s) 42, 67, 319, 387, 792
BseJI GATNNNNATC 1 cut(s) 1028
BseLI CCNNNNNNNGG 4 cut(s) 62, 233, 398, 528
BseMII CTCAG 2 cut(s) 518, 762
BseNI ACTGG 3 cut(s) 392, 450, 677
BseRI GAGGAG 1 cut(s) 1065
BseXI GCAGC 2 cut(s) 124, 523
BsgI GTGCAG 2 cut(s) 530, 561
BshFI GGCC 3 cut(s) 292, 429, 860
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 3 cut(s) 194, 932, 947
BslFI GGGAC 3 cut(s) 178, 804, 1011
BslI CCNNNNNNNGG 4 cut(s) 62, 233, 398, 528
BsmAI GTCTC 3 cut(s) 164, 242, 436
BsmFI GGGAC 3 cut(s) 178, 804, 1011
BsnI GGCC 3 cut(s) 292, 429, 860
Bso31I GGTCTC 1 cut(s) 242
Bsp119I TTCGAA 1 cut(s) 762
Bsp143I GATC 4 cut(s) 107, 862, 984, 1029
BspACI CCGC 1 cut(s) 311
BspANI GGCC 3 cut(s) 292, 429, 860
BspCNI CTCAG 2 cut(s) 519, 763
BspLI GGNNCC 3 cut(s) 6, 53, 792
BspMI ACCTGC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 2 cut(s) 115, 992
BspT104I TTCGAA 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 688
BspTNI GGTCTC 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 3 cut(s) 392, 450, 677
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 56, 879
BssMI GATC 4 cut(s) 107, 862, 984, 1029
BssT1I CCWWGG 2 cut(s) 56, 879
Bst4CI ACNGT 5 cut(s) 232, 286, 307, 411, 899
BstAFI CTTAAG 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 3 cut(s) 199, 948, 1050
BstDEI CTNAG 4 cut(s) 527, 656, 771, 1056
BstF5I GGATG 5 cut(s) 42, 67, 319, 387, 792
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 110, 865, 987, 1032
BstMAI GTCTC 3 cut(s) 164, 242, 436
BstMBI GATC 4 cut(s) 107, 862, 984, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 623, 884, 899
BstSCI CCNGG 1 cut(s) 931
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 124, 523
BstV2I GAAGAC 2 cut(s) 751, 782
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
BsuI GTATCC 2 cut(s) 920, 984
BsuRI GGCC 3 cut(s) 292, 429, 860
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 5 cut(s) 42, 67, 319, 387, 792
BtsIMutI CAGTG 5 cut(s) 228, 399, 524, 684, 904
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 199, 948, 1050
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 3 cut(s) 119, 290, 791
Csp6I GTAC 2 cut(s) 385, 652
CviQI GTAC 2 cut(s) 385, 652
DdeI CTNAG 4 cut(s) 527, 656, 771, 1056
DpnI GATC 4 cut(s) 109, 864, 986, 1031
DpnII GATC 4 cut(s) 107, 862, 984, 1029
EaeI YGGCCR 1 cut(s) 858
Eco130I CCWWGG 2 cut(s) 56, 879
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 2 cut(s) 334, 956
Eco47I GGWCC 2 cut(s) 119, 791
EcoRI GAATTC 1 cut(s) 629
EcoRV GATATC 2 cut(s) 334, 956
EcoT14I CCWWGG 2 cut(s) 56, 879
ErhI CCWWGG 2 cut(s) 56, 879
FaqI GGGAC 3 cut(s) 178, 804, 1011
Fnu4HI GCNGC 2 cut(s) 138, 512
FokI GGATG 5 cut(s) 49, 74, 326, 374, 799
Fsp4HI GCNGC 2 cut(s) 138, 512
FspBI CTAG 7 cut(s) 24, 198, 243, 665, 872, 906, 1079
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 138, 512
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 3 cut(s) 292, 429, 860
HapII CCGG 3 cut(s) 194, 932, 947
HhaI GCGC 1 cut(s) 45
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 6 cut(s) 76, 255, 470, 590, 715, 999
HpaII CCGG 3 cut(s) 194, 932, 947
HphI GGTGA 2 cut(s) 77, 709
Hpy166II GTNNAC 3 cut(s) 119, 322, 553
Hpy188I TCNGA 2 cut(s) 495, 1012
Hpy188III TCNNGA 4 cut(s) 34, 560, 587, 847
Hpy8I GTNNAC 3 cut(s) 119, 322, 553
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 5 cut(s) 232, 286, 307, 411, 899
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 125, 365, 511, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 623, 884, 899
HpyF3I CTNAG 4 cut(s) 527, 656, 771, 1056
HpySE526I ACGT 1 cut(s) 324
HspAI GCGC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 946
KroNI GCCGGC 1 cut(s) 948
Kzo9I GATC 4 cut(s) 107, 862, 984, 1029
LmnI GCTCC 2 cut(s) 40, 185
Lsp1109I GCAGC 2 cut(s) 124, 523
LweI GCATC 6 cut(s) 228, 304, 386, 475, 604, 865
MaeI CTAG 7 cut(s) 24, 198, 243, 665, 872, 906, 1079
MaeII ACGT 1 cut(s) 324
MaeIII GTNAC 2 cut(s) 154, 659
MalI GATC 4 cut(s) 109, 864, 986, 1031
MboI GATC 4 cut(s) 107, 862, 984, 1029
MboII GAAGA 3 cut(s) 590, 751, 787
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 1 cut(s) 984
MluCI AATT 6 cut(s) 85, 608, 629, 764, 817, 918
MlyI GAGTC 2 cut(s) 264, 993
MnlI CCTC 8 cut(s) 42, 440, 522, 688, 799, 923, 1083, 1086
MroNI GCCGGC 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 3 cut(s) 71, 204, 689
MslI CAYNNNNRTG 3 cut(s) 392, 600, 941
MspCI CTTAAG 1 cut(s) 688
MspI CCGG 3 cut(s) 194, 932, 947
MspR9I CCNGG 1 cut(s) 933
MunI CAATTG 1 cut(s) 918
MwoI GCNNNNNNNGC 3 cut(s) 623, 884, 899
NaeI GCCGGC 1 cut(s) 948
NciI CCSGG 1 cut(s) 933
NdeII GATC 4 cut(s) 107, 862, 984, 1029
NgoMIV GCCGGC 1 cut(s) 946
NheI GCTAGC 1 cut(s) 197
NlaIV GGNNCC 3 cut(s) 6, 53, 792
NmuCI GTSAC 2 cut(s) 154, 659
NspV TTCGAA 1 cut(s) 762
PdiI GCCGGC 1 cut(s) 948
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 4 cut(s) 76, 470, 590, 715
PflMI CCANNNNNTGG 2 cut(s) 62, 398
PkrI GCNGC 2 cut(s) 139, 513
PleI GAGTC 2 cut(s) 263, 993
PpsI GAGTC 2 cut(s) 263, 993
PspN4I GGNNCC 3 cut(s) 6, 53, 792
PspPI GGNCC 3 cut(s) 119, 290, 791
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 984
RsaI GTAC 2 cut(s) 386, 653
RsaNI GTAC 2 cut(s) 385, 652
RseI CAYNNNNRTG 3 cut(s) 392, 600, 941
SaqAI TTAA 3 cut(s) 71, 204, 689
SatI GCNGC 2 cut(s) 138, 512
Sau3AI GATC 4 cut(s) 107, 862, 984, 1029
Sau96I GGNCC 3 cut(s) 119, 290, 791
SchI GAGTC 2 cut(s) 264, 993
ScrFI CCNGG 1 cut(s) 933
SfaNI GCATC 6 cut(s) 228, 304, 386, 475, 604, 865
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 2 cut(s) 119, 791
SmiMI CAYNNNNRTG 3 cut(s) 392, 600, 941
SmlI CTYRAG 3 cut(s) 416, 688, 1001
SmoI CTYRAG 3 cut(s) 416, 688, 1001
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 6 cut(s) 85, 608, 629, 764, 817, 918
SsiI CCGC 1 cut(s) 311
SspI AATATT 1 cut(s) 574
SspMI CTAG 7 cut(s) 24, 198, 243, 665, 872, 906, 1079
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 2 cut(s) 56, 879
TaaI ACNGT 5 cut(s) 232, 286, 307, 411, 899
TaiI ACGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 247, 762
TasI AATT 6 cut(s) 85, 608, 629, 764, 817, 918
TatI WGTACW 1 cut(s) 384
TfiI GAWTC 4 cut(s) 76, 470, 590, 715
Tru1I TTAA 3 cut(s) 71, 204, 689
Tru9I TTAA 3 cut(s) 71, 204, 689
TscAI CASTG 5 cut(s) 235, 399, 531, 684, 904
TseFI GTSAC 2 cut(s) 154, 659
TseI GCWGC 2 cut(s) 137, 511
Tsp45I GTSAC 2 cut(s) 154, 659
TspDTI ATGAA 2 cut(s) 78, 756
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 5 cut(s) 235, 399, 531, 684, 904
Van91I CCANNNNNTGG 2 cut(s) 62, 398
Vha464I CTTAAG 1 cut(s) 688
VpaK11BI GGWCC 2 cut(s) 119, 791
XapI RAATTY 3 cut(s) 608, 629, 817
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 7 cut(s) 24, 198, 243, 665, 872, 906, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.