Rw6G012290

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0012574
Physical Location & Seq
Forward (+)
22400100 .. 22406122
6023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012290.1

Sequence Viewer

Length: 1026 bp
ATGGTGAGGGATAGTGCCTTTTATGATATATTGGATATCAATGTTGACGCCTCTGATATTCAGATAAAAAAGGCTTATTATCAGAAGGCAACAGAAGTTCACCCTGATAAAAATCATGGAGATCCAAAGGCTGCCGAAGATTTCATGGCACTTGGTGAAGCTTATCAGGTCTTAATTGATCCTGAGAAGCGTGGATGGTATAACAAGCATGGAAAGCTATGCATACCACAGGACTTCTGGTTACACAGTTACTGTGTGTACGGGATGGTTTATGGGAGTGAATGCTTTAAAGATTACATTGGCGAATTTGCTTCGACTACTTTCTTATCATGTCTTGAAATGGAAGAAGAGGCAGAGGATCCTGAAGTCCGAAACAAGAGAGCTTGGGAGAAGACACAGAAATTGCTGGAGGAAAGGCATGAAAAGCTCACTAAGATTATGATAGATCGCATTCAACCATATGTTGATGGTCATATAGATGAGTTTGAAAAATTAGTAGATTCAGAAGCCCGGCGCCTATCAACAGCTGCCTTTGGAGAGTGTCTTCTACATACACTAGGTACTGCATACATGACAAAAGCTGCAAATGAACTGAAAGGAAAGGAGGAATGCGGGAGAACAGAGTGGATCAAAGTAAATGGTCCCAAAGGATTCGAGATGAGGTCGCAAATACATGCAGCCAAAGAGTCTGAACGTACAGTGGGACGACTAGATCGTACAAACCAATCTCAACATGACAAGGAAGAAGATTTACGGCTACACATTTTTAGTTATCTAAACAACTGGAGGATTGATAATGCATGGAGTACTAATGTAGTCGATATTGATTTAATTTCGTCATATATTTGCAAAGCAATACTTAAAGACTCCACTGTATCTAAAGATGTTCTGAGGCTTCGGGCAGAAGCATTGGCTAAGTTGGGAAAAATCTTCAAAGGTGCGAATCCTCCTTACCGTAGAGAGTACAATATCTGCCTTGAAGATGGACAGCAGAATGAAAATGAGGACTCTGATTACTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

341

Amino Acids

39.44

Weight (kDa)

5.24

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 7 - 68 3.5e-22 DnaJ domain
DnaJ-X PF14308 137 - 320 3.9e-32 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 513
AciI CCGC 1 cut(s) 612
AclWI GGATC 5 cut(s) 116, 173, 353, 366, 635
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 2 cut(s) 48, 514
AdeI CACNNNGTG 1 cut(s) 155
AfaI GTAC 6 cut(s) 260, 562, 697, 718, 808, 965
AgsI TTSAA 5 cut(s) 338, 455, 488, 934, 980
AluBI AGCT 6 cut(s) 161, 217, 383, 427, 527, 581
AluI AGCT 6 cut(s) 161, 217, 383, 427, 527, 581
AlwI GGATC 5 cut(s) 116, 173, 353, 366, 635
AlwNI CAGNNNCTG 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 131, 527, 581, 677
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 516
AspS9I GGNCC 1 cut(s) 641
AsuC2I CCSGG 1 cut(s) 511
AsuHPI GGTGA 3 cut(s) 16, 92, 167
AvaII GGWCC 1 cut(s) 641
BamHI GGATCC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 735, 767
BbsI GAAGAC 2 cut(s) 398, 536
BbvI GCAGC 4 cut(s) 118, 514, 568, 689
BccI CCATC 4 cut(s) 189, 259, 461, 977
BceAI ACGGC 1 cut(s) 770
BcnI CCSGG 1 cut(s) 511
BfaI CTAG 2 cut(s) 557, 710
BfoI RGCGCY 1 cut(s) 517
BisI GCNGC 4 cut(s) 132, 528, 582, 678
BlsI GCNGC 4 cut(s) 133, 529, 583, 679
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 1 cut(s) 641
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 3 cut(s) 360, 515, 643
BmrFI CCNGG 1 cut(s) 511
BpiI GAAGAC 2 cut(s) 398, 536
BpmI CTGGAG 2 cut(s) 428, 805
BpuMI CCSGG 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 111
BsaHI GRCGYC 2 cut(s) 48, 514
Bse1I ACTGG 1 cut(s) 788
Bse8I GATNNNNATC 1 cut(s) 111
BseGI GGATG 2 cut(s) 200, 270
BseJI GATNNNNATC 1 cut(s) 111
BseMII CTCAG 2 cut(s) 174, 881
BseNI ACTGG 1 cut(s) 788
BseXI GCAGC 4 cut(s) 118, 514, 568, 689
BshNI GGYRCC 1 cut(s) 513
BsiSI CCGG 1 cut(s) 511
BslFI GGGAC 2 cut(s) 627, 717
BsmFI GGGAC 2 cut(s) 627, 717
BsmI GAATGC 3 cut(s) 287, 450, 614
Bsp143I GATC 6 cut(s) 121, 178, 358, 445, 627, 712
BspACI CCGC 1 cut(s) 612
BspCNI CTCAG 2 cut(s) 175, 882
BspLI GGNNCC 3 cut(s) 360, 515, 643
BspPI GGATC 5 cut(s) 116, 173, 353, 366, 635
BspT107I GGYRCC 1 cut(s) 513
BsrI ACTGG 1 cut(s) 788
BssMI GATC 6 cut(s) 121, 178, 358, 445, 627, 712
BssNI GRCGYC 2 cut(s) 48, 514
Bst4CI ACNGT 5 cut(s) 248, 254, 700, 874, 956
Bst6I CTCTTC 1 cut(s) 342
BstACI GRCGYC 2 cut(s) 48, 514
BstDEI CTNAG 5 cut(s) 183, 432, 890, 915, 1018
BstF5I GGATG 2 cut(s) 200, 270
BstH2I RGCGCY 1 cut(s) 517
BstHHI GCGC 1 cut(s) 516
BstKTI GATC 6 cut(s) 124, 181, 361, 448, 630, 715
BstMBI GATC 6 cut(s) 121, 178, 358, 445, 627, 712
BstMWI GCNNNNNNNGC 2 cut(s) 214, 424
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 509
BstV1I GCAGC 4 cut(s) 118, 514, 568, 689
BstV2I GAAGAC 2 cut(s) 398, 536
BstX2I RGATCY 2 cut(s) 121, 358
BstYI RGATCY 2 cut(s) 121, 358
BtsCI GGATG 2 cut(s) 200, 270
BtsIMutI CAGTG 2 cut(s) 705, 870
CaiI CAGNNNCTG 1 cut(s) 252
CfoI GCGC 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 641
CseI GACGC 1 cut(s) 56
Csp6I GTAC 6 cut(s) 259, 561, 696, 717, 807, 964
CviAII CATG 9 cut(s) 116, 145, 209, 330, 419, 571, 674, 734, 801
CviQI GTAC 6 cut(s) 259, 561, 696, 717, 807, 964
DdeI CTNAG 5 cut(s) 183, 432, 890, 915, 1018
DinI GGCGCC 1 cut(s) 515
DpnI GATC 6 cut(s) 123, 180, 360, 447, 629, 714
DpnII GATC 6 cut(s) 121, 178, 358, 445, 627, 712
DraI TTTAAA 1 cut(s) 289
DraIII CACNNNGTG 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 384
EcoRV GATATC 1 cut(s) 37
EcoT22I ATGCAT 2 cut(s) 224, 802
EgeI GGCGCC 1 cut(s) 515
EheI GGCGCC 1 cut(s) 515
FaeI CATG 9 cut(s) 119, 148, 212, 333, 422, 574, 677, 737, 804
FalI AAGNNNNNCTT 2 cut(s) 843, 875
FaqI GGGAC 2 cut(s) 627, 717
FatI CATG 9 cut(s) 115, 144, 208, 329, 418, 570, 673, 733, 800
FauI CCCGC 1 cut(s) 605
FauNDI CATATG 1 cut(s) 460
Fnu4HI GCNGC 4 cut(s) 132, 528, 582, 678
FokI GGATG 2 cut(s) 207, 277
Fsp4HI GCNGC 4 cut(s) 132, 528, 582, 678
FspBI CTAG 2 cut(s) 557, 710
GlaI GCGC 1 cut(s) 515
GluI GCNGC 4 cut(s) 132, 528, 582, 678
GsuI CTGGAG 2 cut(s) 428, 805
HaeII RGCGCY 1 cut(s) 517
HapII CCGG 1 cut(s) 511
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 516
Hin1I GRCGYC 2 cut(s) 48, 514
Hin1II CATG 9 cut(s) 119, 148, 212, 333, 422, 574, 677, 737, 804
Hin6I GCGC 1 cut(s) 514
HinP1I GCGC 1 cut(s) 514
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 6 cut(s) 500, 651, 686, 866, 943, 1007
HpaII CCGG 1 cut(s) 511
HphI GGTGA 3 cut(s) 16, 92, 167
Hpy166II GTNNAC 3 cut(s) 46, 100, 259
Hpy188I TCNGA 9 cut(s) 55, 63, 84, 371, 505, 691, 891, 1012, 1021
Hpy188III TCNNGA 4 cut(s) 182, 335, 362, 655
Hpy8I GTNNAC 3 cut(s) 46, 100, 259
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 5 cut(s) 248, 254, 700, 874, 956
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 6 cut(s) 222, 566, 584, 677, 800, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 424
HpyF3I CTNAG 5 cut(s) 183, 432, 890, 915, 1018
HpySE526I ACGT 1 cut(s) 694
Hsp92I GRCGYC 2 cut(s) 48, 514
Hsp92II CATG 9 cut(s) 119, 148, 212, 333, 422, 574, 677, 737, 804
HspAI GCGC 1 cut(s) 514
KasI GGCGCC 1 cut(s) 513
Kzo9I GATC 6 cut(s) 121, 178, 358, 445, 627, 712
LpnPI CCDG 9 cut(s) 117, 152, 195, 215, 223, 375, 392, 524, 769
Lsp1109I GCAGC 4 cut(s) 118, 514, 568, 689
MaeI CTAG 2 cut(s) 557, 710
MaeII ACGT 1 cut(s) 694
MaeIII GTNAC 2 cut(s) 240, 248
MalI GATC 6 cut(s) 123, 180, 360, 447, 629, 714
MboI GATC 6 cut(s) 121, 178, 358, 445, 627, 712
MboII GAAGA 9 cut(s) 149, 356, 359, 403, 536, 755, 758, 922, 992
MflI RGATCY 2 cut(s) 121, 358
MluCI AATT 5 cut(s) 174, 305, 401, 491, 831
Mly113I GGCGCC 1 cut(s) 514
MlyI GAGTC 3 cut(s) 695, 860, 1001
Mph1103I ATGCAT 2 cut(s) 224, 802
MseI TTAA 5 cut(s) 173, 288, 830, 861, 1024
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 1 cut(s) 511
Mva1269I GAATGC 3 cut(s) 287, 450, 614
MwoI GCNNNNNNNGC 2 cut(s) 214, 424
NarI GGCGCC 1 cut(s) 514
NciI CCSGG 1 cut(s) 511
NdeI CATATG 1 cut(s) 460
NdeII GATC 6 cut(s) 121, 178, 358, 445, 627, 712
NlaIII CATG 9 cut(s) 119, 148, 212, 333, 422, 574, 677, 737, 804
NlaIV GGNNCC 3 cut(s) 360, 515, 643
NsiI ATGCAT 2 cut(s) 224, 802
NspI RCATGY 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PctI GAATGC 3 cut(s) 287, 450, 614
PfeI GAWTC 3 cut(s) 500, 651, 943
PkrI GCNGC 4 cut(s) 133, 529, 583, 679
PleI GAGTC 3 cut(s) 694, 860, 1001
PluTI GGCGCC 1 cut(s) 517
PpsI GAGTC 3 cut(s) 694, 860, 1001
PspN4I GGNNCC 3 cut(s) 360, 515, 643
PspPI GGNCC 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 252
PsuI RGATCY 2 cut(s) 121, 358
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 6 cut(s) 260, 562, 697, 718, 808, 965
RsaNI GTAC 6 cut(s) 259, 561, 696, 717, 807, 964
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 5 cut(s) 173, 288, 830, 861, 1024
SatI GCNGC 4 cut(s) 132, 528, 582, 678
Sau3AI GATC 6 cut(s) 121, 178, 358, 445, 627, 712
Sau96I GGNCC 1 cut(s) 641
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 3 cut(s) 695, 860, 1001
ScrFI CCNGG 1 cut(s) 511
SfoI GGCGCC 1 cut(s) 515
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 477
Sse9I AATT 5 cut(s) 174, 305, 401, 491, 831
SsiI CCGC 1 cut(s) 612
SspDI GGCGCC 1 cut(s) 513
SspMI CTAG 2 cut(s) 557, 710
StyD4I CCNGG 1 cut(s) 509
TaaI ACNGT 5 cut(s) 248, 254, 700, 874, 956
TaiI ACGT 1 cut(s) 697
TaqI TCGA 3 cut(s) 314, 654, 819
TasI AATT 5 cut(s) 174, 305, 401, 491, 831
TatI WGTACW 2 cut(s) 806, 963
TfiI GAWTC 3 cut(s) 500, 651, 943
Tru1I TTAA 5 cut(s) 173, 288, 830, 861, 1024
Tru9I TTAA 5 cut(s) 173, 288, 830, 861, 1024
TscAI CASTG 2 cut(s) 705, 877
TseI GCWGC 4 cut(s) 131, 527, 581, 677
TspDTI ATGAA 4 cut(s) 133, 435, 603, 1011
TspRI CASTG 2 cut(s) 705, 877
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XspI CTAG 2 cut(s) 557, 710
ZrmI AGTACT 1 cut(s) 808
Zsp2I ATGCAT 2 cut(s) 224, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.