Rorug06G0020700

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012574
Physical Location & Seq
Reverse (-)
2591735 .. 2593432
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0020700.1

Sequence Viewer

Length: 984 bp
ATGGGTTCTCTTCAGGTTTTCATTTCTGCAGCAGCATTACTAGTTCTGGTTTTGGCAGCCATTGATGGAGCTCAAGCAAATACCGTGGTCAGTGGCACAGTCTTCTGTGACCAATGCAAAGATGGTGAAAGGTCCCTCTTTGATTATCCAATCTATGGAATTAAAGTACAAGTGGCATGTAGTGACAGTAATGGCCAAGTAACATTGTCAAGGGAGGAGACTACCAACTGGTTTGGGAACTATGCTATGCAATTTGACGGGACACCAGATTTGAGCGGCTGTTATGCCAAGGTTTTAAGCTCAGGGCAAGGCTCATGTGGGATTCCTGCTGGCCCTGCTCAGAGTCTTAAACTTGTGTTTACGATGTTTGGCATGGGAATGTATGCTGTGGACTCTTTGCTCACTCAGCCTGCTCAGCCTATGTCATTTTGCCCAAAGTCATCTAATCCTGTGCCTGCTCCTGTAACACCGGCACCGCCTAGACAAGTAACGCCAGCCAGTCCTCCACCTTTCAGGCTTCCCCCAATTGCTCCATTGCCGCCGATGCCTCACTTGCCACCATTGCCTCCACTGCCACCGCTACCACCAATGCCACCAGTGCCCTTCTTGGAACTCACAGCATGCCCACATCAGAGTTGGACAAGGCCAGAGTACAAATGCTACTGGAGGGCAGTGAATCCAGACACAAAGGTAGCTGTTGTTTTCGGATTGCTTGCAGCAAGAAGATATGGGACTGACCTAACATTGTGGCACGGCCTACAGGGAAGAGGAGACCCTTATAGGACTCTCCTAAGGGAAGGCATCACTGCCTTTCTCAACTCCTACAACAGTCTTCAATTTCCTTACAATACCATTGCTGTTGTGCAGCATATGAATTCGGGATTGATGGGTTCCGAGAGGAATGTCCTCTATACAGCCTTGAGGTTCATCAGGGCTAATTCAGGCTATGGCAAAGTCACCTGCAAATTTACTTCTTGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

327

Amino Acids

35.39

Weight (kDa)

8.77

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 30 - 111 7.2e-13 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 968
Acc36I ACCTGC 1 cut(s) 968
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 1 cut(s) 155
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 4 cut(s) 276, 476, 539, 578
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 2 cut(s) 874, 965
AfaI GTAC 2 cut(s) 168, 653
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 836
AhlI ACTAGT 1 cut(s) 40
AluBI AGCT 3 cut(s) 71, 300, 695
AluI AGCT 3 cut(s) 71, 300, 695
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 212, 765
AoxI GGCC 4 cut(s) 193, 331, 644, 754
ApeKI GCWGC 5 cut(s) 29, 32, 56, 716, 865
ApoI RAATTY 2 cut(s) 874, 965
ArsI GACNNNNNNTTYG 2 cut(s) 253, 285
AspS9I GGNCC 2 cut(s) 132, 332
AsuHPI GGTGA 2 cut(s) 137, 949
AvaII GGWCC 1 cut(s) 132
AxyI CCTNAGG 1 cut(s) 791
BaeGI GKGCMC 1 cut(s) 603
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 73
BbsI GAAGAC 2 cut(s) 94, 824
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 5 cut(s) 41, 44, 68, 728, 877
BccI CCATC 3 cut(s) 59, 116, 880
BceAI ACGGC 1 cut(s) 769
BcoDI GTCTC 2 cut(s) 212, 765
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 480
BfmI CTRYAG 2 cut(s) 27, 758
BfuAI ACCTGC 1 cut(s) 968
BisI GCNGC 7 cut(s) 30, 33, 57, 277, 539, 717, 866
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 7 cut(s) 31, 34, 58, 278, 540, 718, 867
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 132, 332
BmiI GGNNCC 3 cut(s) 134, 474, 892
BmsI GCATC 2 cut(s) 534, 810
BpiI GAAGAC 2 cut(s) 94, 824
BpmI CTGGAG 1 cut(s) 685
Bpu10I CCTNAGC 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 414
BpuEI CTTGAG 2 cut(s) 57, 940
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 2 cut(s) 84, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 469
Bse1I ACTGG 4 cut(s) 233, 498, 596, 668
Bse21I CCTNAGG 1 cut(s) 791
Bse3DI GCAATG 3 cut(s) 533, 560, 852
BseDI CCNNGG 2 cut(s) 84, 288
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 3 cut(s) 533, 560, 852
BseMII CTCAG 4 cut(s) 315, 353, 419, 428
BseNI ACTGG 4 cut(s) 233, 498, 596, 668
BseRI GAGGAG 2 cut(s) 230, 783
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 5 cut(s) 41, 44, 68, 728, 877
BsgI GTGCAG 1 cut(s) 884
BshFI GGCC 4 cut(s) 195, 333, 646, 756
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 470
BslFI GGGAC 3 cut(s) 118, 274, 745
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 212, 765
BsmFI GGGAC 3 cut(s) 118, 274, 745
BsnI GGCC 4 cut(s) 195, 333, 646, 756
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 73, 603
Bsp1720I GCTNAGC 1 cut(s) 414
BspACI CCGC 4 cut(s) 276, 476, 539, 578
BspANI GGCC 4 cut(s) 195, 333, 646, 756
BspCNI CTCAG 4 cut(s) 314, 352, 418, 427
BspLI GGNNCC 3 cut(s) 134, 474, 892
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 968
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 765
BsrBI CCGCTC 1 cut(s) 276
BsrDI GCAATG 3 cut(s) 533, 560, 852
BsrFI RCCGGY 1 cut(s) 469
BsrI ACTGG 4 cut(s) 233, 498, 596, 668
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 2 cut(s) 84, 288
BssT1I CCWWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 85, 100, 188, 830
Bst6I CTCTTC 2 cut(s) 15, 760
BstC8I GCNNGC 6 cut(s) 331, 411, 456, 495, 622, 714
BstDEI CTNAG 5 cut(s) 301, 339, 405, 414, 791
BstDSI CCRYGG 1 cut(s) 84
BstMAI GTCTC 2 cut(s) 212, 765
BstMWI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 544, 553, 562, 571, 598
BstNSI RCATGY 2 cut(s) 180, 624
BstSFI CTRYAG 2 cut(s) 27, 758
BstSLI GKGCMC 1 cut(s) 603
BstV1I GCAGC 5 cut(s) 41, 44, 68, 728, 877
BstV2I GAAGAC 2 cut(s) 94, 824
Bsu36I CCTNAGG 1 cut(s) 791
BsuRI GGCC 4 cut(s) 195, 333, 646, 756
BtgI CCRYGG 1 cut(s) 84
BtsI GCAGTG 3 cut(s) 569, 678, 804
BtsIMutI CAGTG 5 cut(s) 97, 569, 603, 678, 804
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 6 cut(s) 331, 411, 456, 495, 622, 714
Cfr10I RCCGGY 1 cut(s) 469
Cfr13I GGNCC 2 cut(s) 132, 332
Csp6I GTAC 2 cut(s) 167, 652
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 4 cut(s) 177, 315, 373, 621
CviQI GTAC 2 cut(s) 167, 652
DdeI CTNAG 5 cut(s) 301, 339, 405, 414, 791
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 15, 760
EarI CTCTTC 2 cut(s) 15, 760
Ecl136II GAGCTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 71
Eco81I CCTNAGG 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 4 cut(s) 180, 318, 376, 624
FaqI GGGAC 3 cut(s) 118, 274, 745
FatI CATG 4 cut(s) 176, 314, 372, 620
FauNDI CATATG 1 cut(s) 870
Fnu4HI GCNGC 7 cut(s) 30, 33, 57, 277, 539, 717, 866
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 7 cut(s) 30, 33, 57, 277, 539, 717, 866
FspBI CTAG 2 cut(s) 41, 480
GluI GCNGC 7 cut(s) 30, 33, 57, 277, 539, 717, 866
GsuI CTGGAG 1 cut(s) 685
HaeIII GGCC 4 cut(s) 195, 333, 646, 756
HapII CCGG 1 cut(s) 470
Hin1II CATG 4 cut(s) 180, 318, 376, 624
HinfI GANTC 5 cut(s) 322, 343, 392, 676, 784
HpaII CCGG 1 cut(s) 470
HphI GGTGA 2 cut(s) 137, 949
Hpy166II GTNNAC 2 cut(s) 360, 391
Hpy188I TCNGA 4 cut(s) 342, 633, 707, 895
Hpy188III TCNNGA 2 cut(s) 680, 879
Hpy8I GTNNAC 2 cut(s) 360, 391
HpyAV CCTTC 2 cut(s) 613, 791
HpyCH4III ACNGT 4 cut(s) 85, 100, 188, 830
HpyCH4V TGCA 7 cut(s) 29, 117, 250, 716, 865, 963, 978
HpyF10VI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 544, 553, 562, 571, 598
HpyF3I CTNAG 5 cut(s) 301, 339, 405, 414, 791
Hsp92II CATG 4 cut(s) 180, 318, 376, 624
LmnI GCTCC 3 cut(s) 68, 463, 535
Lsp1109I GCAGC 5 cut(s) 41, 44, 68, 728, 877
LweI GCATC 2 cut(s) 534, 810
MaeI CTAG 2 cut(s) 41, 480
MaeIII GTNAC 6 cut(s) 107, 182, 199, 463, 487, 955
MbiI CCGCTC 1 cut(s) 276
MboII GAAGA 4 cut(s) 94, 735, 777, 824
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 2 cut(s) 73, 603
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 7 cut(s) 159, 251, 525, 836, 874, 937, 965
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 3 cut(s) 352, 386, 778
MmeI TCCRAC 1 cut(s) 617
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
MseI TTAA 3 cut(s) 162, 296, 348
MslI CAYNNNNRTG 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 195
MspI CCGG 1 cut(s) 470
MunI CAATTG 1 cut(s) 525
MwoI GCNNNNNNNGC 8 cut(s) 335, 406, 415, 544, 553, 562, 571, 598
NdeI CATATG 1 cut(s) 870
NlaIII CATG 4 cut(s) 180, 318, 376, 624
NlaIV GGNNCC 3 cut(s) 134, 474, 892
NmuCI GTSAC 3 cut(s) 107, 182, 955
NspI RCATGY 2 cut(s) 180, 624
PaeI GCATGC 1 cut(s) 624
PaqCI CACCTGC 1 cut(s) 968
PfeI GAWTC 2 cut(s) 322, 676
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 7 cut(s) 31, 34, 58, 278, 540, 718, 867
PleI GAGTC 3 cut(s) 351, 386, 778
PpsI GAGTC 3 cut(s) 351, 386, 778
PpuMI RGGWCCY 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 3 cut(s) 134, 474, 892
PspPI GGNCC 2 cut(s) 132, 332
PspPPI RGGWCCY 1 cut(s) 132
PstI CTGCAG 1 cut(s) 31
RsaI GTAC 2 cut(s) 168, 653
RsaNI GTAC 2 cut(s) 167, 652
RseI CAYNNNNRTG 1 cut(s) 377
SacI GAGCTC 1 cut(s) 73
SaqAI TTAA 3 cut(s) 162, 296, 348
SatI GCNGC 7 cut(s) 30, 33, 57, 277, 539, 717, 866
Sau96I GGNCC 2 cut(s) 132, 332
SchI GAGTC 3 cut(s) 352, 386, 778
SduI GDGCHC 2 cut(s) 73, 603
SfaNI GCATC 2 cut(s) 534, 810
SfcI CTRYAG 2 cut(s) 27, 758
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 72, 919
SmoI CTYRAG 2 cut(s) 72, 919
SpeI ACTAGT 1 cut(s) 40
SphI GCATGC 1 cut(s) 624
Sse9I AATT 7 cut(s) 159, 251, 525, 836, 874, 937, 965
SsiI CCGC 4 cut(s) 276, 476, 539, 578
SspMI CTAG 2 cut(s) 41, 480
SstI GAGCTC 1 cut(s) 73
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 4 cut(s) 85, 100, 188, 830
TasI AATT 7 cut(s) 159, 251, 525, 836, 874, 937, 965
TatI WGTACW 2 cut(s) 166, 651
TauI GCSGC 2 cut(s) 279, 541
TfiI GAWTC 2 cut(s) 322, 676
Tru1I TTAA 3 cut(s) 162, 296, 348
Tru9I TTAA 3 cut(s) 162, 296, 348
TscAI CASTG 5 cut(s) 97, 576, 603, 678, 811
TseFI GTSAC 3 cut(s) 107, 182, 955
TseI GCWGC 5 cut(s) 29, 32, 56, 716, 865
Tsp45I GTSAC 3 cut(s) 107, 182, 955
TspDTI ATGAA 3 cut(s) 10, 887, 916
TspRI CASTG 5 cut(s) 97, 576, 603, 678, 811
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 2 cut(s) 874, 965
XceI RCATGY 2 cut(s) 180, 624
XcmI CCANNNNNNNNNTGG 2 cut(s) 119, 633
XspI CTAG 2 cut(s) 41, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.