Rh6AG142300

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012574
Physical Location & Seq
Forward (+)
22107293 .. 22123020
15728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG142300.1

Sequence Viewer

Length: 1086 bp
ATGGAGTCTATCTATCATCTGCTATTCTGTTATAACATTGGTTGTGATGATCTGACAAATATGGTGAGGGATAGTGCCTTTTATGATATATTGGATATCAATGTTGACGCCTCTGATATTCAGATAAAAAAGGCTTATTATCAGAAGGCAACAGAAGTTCACCCTGATAAAAATCATGGAGATCCAAAGGCTGCCGAAGATTTCATGGCACTTGGTGAAGCTTATCAGGTCTTAATTGATCCTGAGAAGCGTGGATGGTATAACAAGCATGGAAAGCTATGCATACCACAGGACTTCTGGTTACACAGTTACTGTGTGTACGGGATGGTTTATGGGAGTGAATGCTTTAAAGATTACATTGGCGAATTTGCTTCGACTACTTTCTTATCATGTCTTGAAATGGAAGAAGAGGCGGAGGATCCTGAAGTCCGAAACAAGAGAGCTTGGGAGAAGACACAGAAATTGCTGGAGGAAAGGCATGAAAAGCTCACTAAGATTATGATAGATCGCATTCAACCATATGTTGATGGTCATATAGATGAGTTTGAAAAATTAGTAGATTCAGAAGCCCGGCGCCTATCAACAGCTGCCTTTGGAGAGTGTCTCCTACATACACTAGGTACTGCATACATGACAAAAGCTGCAAATGAACTGAAAGGAAAGGAGGAATGCGGGAGAACAGAGTGGATCAAAGTAAATGGTCCCAAAGGATTCGAGATGAGGTCGCAAATACATGCAGCCAAAGAGTCTGAACGTACAGTGGGACGACTAGATCGTACAAACCAATCTCAACATGACAAGGAAGAAGATTTACGGCTACACATTTTTAGTTATCTAAACAACTGGAGGATTGATAATGCATGGAGTACTAATGTAGTCGATATTGATACAATTTCGTCATATATTTGCAAAGCAATACTTAAAGACTCCACTGTATCTAAAGATGTTCTGAGGCTTCGGGCAGAAGCATTGGCTAAGTTGGGAAAAATCTTCAAAGGTGCGAATCCTCCTTACCGTAGAGAGTACAATATCTGCCTTGAAGATGGACAGCAGAATGAAAATGAGGACTCTGATTACTCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ-X

Protein Analysis

361

Amino Acids

41.77

Weight (kDa)

5.14

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 27 - 88 3.8e-22 DnaJ domain
DnaJ-X PF14308 157 - 340 2.1e-32 X-domain of DnaJ-containing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 573
AciI CCGC 2 cut(s) 413, 672
AclWI GGATC 5 cut(s) 176, 233, 413, 426, 695
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 108, 574
AdeI CACNNNGTG 1 cut(s) 215
AfaI GTAC 6 cut(s) 320, 622, 757, 778, 868, 1025
AgsI TTSAA 5 cut(s) 398, 515, 548, 994, 1040
AluBI AGCT 6 cut(s) 221, 277, 443, 487, 587, 641
AluI AGCT 6 cut(s) 221, 277, 443, 487, 587, 641
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 5 cut(s) 176, 233, 413, 426, 695
AlwNI CAGNNNCTG 1 cut(s) 312
ApeKI GCWGC 4 cut(s) 191, 587, 641, 737
ApoI RAATTY 1 cut(s) 365
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 1 cut(s) 701
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 3 cut(s) 76, 152, 227
AvaII GGWCC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 795, 827
BbsI GAAGAC 1 cut(s) 458
BbvI GCAGC 4 cut(s) 178, 574, 628, 749
BccI CCATC 4 cut(s) 249, 319, 521, 1037
BceAI ACGGC 1 cut(s) 830
BcnI CCSGG 1 cut(s) 571
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 617, 770
BfoI RGCGCY 1 cut(s) 577
BisI GCNGC 4 cut(s) 192, 588, 642, 738
BlsI GCNGC 4 cut(s) 193, 589, 643, 739
BmcAI AGTACT 1 cut(s) 868
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 3 cut(s) 420, 575, 703
BmrFI CCNGG 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 458
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BpmI CTGGAG 2 cut(s) 488, 865
BpuMI CCSGG 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 108, 574
Bse1I ACTGG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 171
BseGI GGATG 2 cut(s) 260, 330
BseJI GATNNNNATC 1 cut(s) 171
BseMII CTCAG 2 cut(s) 234, 941
BseNI ACTGG 1 cut(s) 848
BseXI GCAGC 4 cut(s) 178, 574, 628, 749
BshNI GGYRCC 1 cut(s) 573
BsiSI CCGG 1 cut(s) 571
BslFI GGGAC 2 cut(s) 687, 777
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 687, 777
BsmI GAATGC 3 cut(s) 347, 510, 674
Bsp143I GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
BspACI CCGC 2 cut(s) 413, 672
BspCNI CTCAG 2 cut(s) 235, 942
BspLI GGNNCC 3 cut(s) 420, 575, 703
BspPI GGATC 5 cut(s) 176, 233, 413, 426, 695
BspT107I GGYRCC 1 cut(s) 573
BsrI ACTGG 1 cut(s) 848
BssMI GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
BssNI GRCGYC 2 cut(s) 108, 574
Bst4CI ACNGT 5 cut(s) 308, 314, 760, 934, 1016
Bst6I CTCTTC 1 cut(s) 402
BstACI GRCGYC 2 cut(s) 108, 574
BstDEI CTNAG 5 cut(s) 243, 492, 950, 975, 1078
BstF5I GGATG 2 cut(s) 260, 330
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 7 cut(s) 52, 184, 241, 421, 508, 690, 775
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
BstMWI GCNNNNNNNGC 2 cut(s) 274, 484
BstNSI RCATGY 1 cut(s) 737
BstSCI CCNGG 1 cut(s) 569
BstV1I GCAGC 4 cut(s) 178, 574, 628, 749
BstV2I GAAGAC 1 cut(s) 458
BstX2I RGATCY 2 cut(s) 181, 418
BstYI RGATCY 2 cut(s) 181, 418
BtsCI GGATG 2 cut(s) 260, 330
BtsIMutI CAGTG 2 cut(s) 765, 930
CaiI CAGNNNCTG 1 cut(s) 312
CfoI GCGC 1 cut(s) 576
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 1 cut(s) 116
Csp6I GTAC 6 cut(s) 319, 621, 756, 777, 867, 1024
CviAII CATG 9 cut(s) 176, 205, 269, 390, 479, 631, 734, 794, 861
CviQI GTAC 6 cut(s) 319, 621, 756, 777, 867, 1024
DdeI CTNAG 5 cut(s) 243, 492, 950, 975, 1078
DinI GGCGCC 1 cut(s) 575
DpnI GATC 7 cut(s) 51, 183, 240, 420, 507, 689, 774
DpnII GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
DraI TTTAAA 1 cut(s) 349
DraIII CACNNNGTG 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 428
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 444
EcoRV GATATC 1 cut(s) 97
EcoT22I ATGCAT 2 cut(s) 284, 862
EgeI GGCGCC 1 cut(s) 575
EheI GGCGCC 1 cut(s) 575
FaeI CATG 9 cut(s) 179, 208, 272, 393, 482, 634, 737, 797, 864
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 2 cut(s) 687, 777
FatI CATG 9 cut(s) 175, 204, 268, 389, 478, 630, 733, 793, 860
FauI CCCGC 1 cut(s) 665
FauNDI CATATG 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 192, 588, 642, 738
FokI GGATG 2 cut(s) 267, 337
Fsp4HI GCNGC 4 cut(s) 192, 588, 642, 738
FspBI CTAG 2 cut(s) 617, 770
GlaI GCGC 1 cut(s) 575
GluI GCNGC 4 cut(s) 192, 588, 642, 738
GsuI CTGGAG 2 cut(s) 488, 865
HaeII RGCGCY 1 cut(s) 577
HapII CCGG 1 cut(s) 571
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 576
Hin1I GRCGYC 2 cut(s) 108, 574
Hin1II CATG 9 cut(s) 179, 208, 272, 393, 482, 634, 737, 797, 864
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 7 cut(s) 5, 560, 711, 746, 926, 1003, 1067
HpaII CCGG 1 cut(s) 571
HphI GGTGA 3 cut(s) 76, 152, 227
Hpy166II GTNNAC 3 cut(s) 106, 160, 319
Hpy188III TCNNGA 4 cut(s) 242, 395, 422, 715
Hpy8I GTNNAC 3 cut(s) 106, 160, 319
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 5 cut(s) 308, 314, 760, 934, 1016
HpyCH4IV ACGT 1 cut(s) 754
HpyCH4V TGCA 6 cut(s) 282, 626, 644, 737, 860, 909
HpyF10VI GCNNNNNNNGC 2 cut(s) 274, 484
HpyF3I CTNAG 5 cut(s) 243, 492, 950, 975, 1078
HpySE526I ACGT 1 cut(s) 754
Hsp92I GRCGYC 2 cut(s) 108, 574
Hsp92II CATG 9 cut(s) 179, 208, 272, 393, 482, 634, 737, 797, 864
HspAI GCGC 1 cut(s) 574
KasI GGCGCC 1 cut(s) 573
Kzo9I GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
LpnPI CCDG 9 cut(s) 177, 212, 255, 275, 283, 435, 452, 584, 829
Lsp1109I GCAGC 4 cut(s) 178, 574, 628, 749
MaeI CTAG 2 cut(s) 617, 770
MaeII ACGT 1 cut(s) 754
MaeIII GTNAC 2 cut(s) 300, 308
MalI GATC 7 cut(s) 51, 183, 240, 420, 507, 689, 774
MboI GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
MboII GAAGA 8 cut(s) 209, 416, 419, 463, 815, 818, 982, 1052
MflI RGATCY 2 cut(s) 181, 418
MluCI AATT 5 cut(s) 234, 365, 461, 551, 891
Mly113I GGCGCC 1 cut(s) 574
MlyI GAGTC 4 cut(s) 14, 755, 920, 1061
Mph1103I ATGCAT 2 cut(s) 284, 862
MseI TTAA 4 cut(s) 233, 348, 921, 1084
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 571
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 3 cut(s) 347, 510, 674
MwoI GCNNNNNNNGC 2 cut(s) 274, 484
NarI GGCGCC 1 cut(s) 574
NciI CCSGG 1 cut(s) 571
NdeI CATATG 1 cut(s) 520
NdeII GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
NlaIII CATG 9 cut(s) 179, 208, 272, 393, 482, 634, 737, 797, 864
NlaIV GGNNCC 3 cut(s) 420, 575, 703
NsiI ATGCAT 2 cut(s) 284, 862
NspI RCATGY 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 772
PctI GAATGC 3 cut(s) 347, 510, 674
PfeI GAWTC 3 cut(s) 560, 711, 1003
PkrI GCNGC 4 cut(s) 193, 589, 643, 739
PleI GAGTC 4 cut(s) 13, 754, 920, 1061
PluTI GGCGCC 1 cut(s) 577
PpsI GAGTC 4 cut(s) 13, 754, 920, 1061
PsiI TTATAA 1 cut(s) 33
PspN4I GGNNCC 3 cut(s) 420, 575, 703
PspPI GGNCC 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 312
PsuI RGATCY 2 cut(s) 181, 418
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 6 cut(s) 320, 622, 757, 778, 868, 1025
RsaNI GTAC 6 cut(s) 319, 621, 756, 777, 867, 1024
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 4 cut(s) 233, 348, 921, 1084
SatI GCNGC 4 cut(s) 192, 588, 642, 738
Sau3AI GATC 7 cut(s) 49, 181, 238, 418, 505, 687, 772
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 868
SchI GAGTC 4 cut(s) 14, 755, 920, 1061
ScrFI CCNGG 1 cut(s) 571
SfoI GGCGCC 1 cut(s) 575
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 5 cut(s) 234, 365, 461, 551, 891
SsiI CCGC 2 cut(s) 413, 672
SspDI GGCGCC 1 cut(s) 573
SspMI CTAG 2 cut(s) 617, 770
StyD4I CCNGG 1 cut(s) 569
TaaI ACNGT 5 cut(s) 308, 314, 760, 934, 1016
TaiI ACGT 1 cut(s) 757
TaqI TCGA 3 cut(s) 374, 714, 879
TasI AATT 5 cut(s) 234, 365, 461, 551, 891
TatI WGTACW 2 cut(s) 866, 1023
TfiI GAWTC 3 cut(s) 560, 711, 1003
Tru1I TTAA 4 cut(s) 233, 348, 921, 1084
Tru9I TTAA 4 cut(s) 233, 348, 921, 1084
TscAI CASTG 2 cut(s) 765, 937
TseI GCWGC 4 cut(s) 191, 587, 641, 737
TspDTI ATGAA 4 cut(s) 193, 495, 663, 1071
TspRI CASTG 2 cut(s) 765, 937
VpaK11BI GGWCC 1 cut(s) 701
XapI RAATTY 1 cut(s) 365
XceI RCATGY 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XspI CTAG 2 cut(s) 617, 770
ZrmI AGTACT 1 cut(s) 868
Zsp2I ATGCAT 2 cut(s) 284, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.