FvH4_2g10440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013607
Physical Location & Seq
Forward (+)
9281800 .. 9286013
4214 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10440.t1

Sequence Viewer

Length: 618 bp
ATGGGGGACTACATAGTTATAAGATGGAAGATTAGAAGAGATAGCAAAAGCATATATGCAACCCCATTTCGTGTATTTGCATCTGTCATCATTGTAATACTGTTCTTGTGGACCATTTGGTCTGGATTTGAAGTTGCAGAGGAACCAAGAATGAACCATGAGTACTACAACAATGGTTTGGCAGTCTTTGGTGGAGTGCTTACCATAGTTCTTGGTTTCTTTTTCCTGGCTGTTGGGTTTCCTATACTGGCAGACTTGTTTATGGAGTTTGAGGAACAATTTCGAAACCCAAAGGAGAGCGGCATACCTCAAGGGGGTAAGATGAAGACGATATGTATCATAAGCCGCATAATTGTGAGTTTGATTGCAATGGTGATGCTAATACGGGCAATTTCTACCGGGTTTAGGCTTGTAACTGTACCAAGTGAAGGCACATATTATCCTCTAGCATCTCCAGTTGGCTTTGTCAGTATTATGTTTGGTATCAGTTACTTTATCATTGGACTCTGCACAATTATAGAGCTAGCAGTAGAATTGATGAATCGATTGCAAGGCAAACTGATGAACGAAATAGTTATTCATCAAGTTCACAATATAGATATCGATAGTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

23.22

Weight (kDa)

6.3

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
AasI GACNNNNNNGTC 1 cut(s) 118
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 2 cut(s) 300, 346
AfaI GTAC 2 cut(s) 164, 420
AfiI CCNNNNNNNGG 3 cut(s) 314, 405, 428
AgsI TTSAA 1 cut(s) 131
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 283
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 332
BccI CCATC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 400
BfaI CTAG 2 cut(s) 446, 524
BisI GCNGC 2 cut(s) 301, 346
BlsI GCNGC 2 cut(s) 302, 347
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 227, 400
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 227, 400
BmsI GCATC 3 cut(s) 89, 366, 458
BmtI GCTAGC 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 1 cut(s) 294
BpuMI CCSGG 1 cut(s) 400
Bsa29I ATCGAT 2 cut(s) 544, 603
BsaBI GATNNNNATC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 405, 428
Bse1I ACTGG 2 cut(s) 252, 455
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 2 cut(s) 544, 603
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 3 cut(s) 314, 405, 428
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 252, 455
BsgI GTGCAG 1 cut(s) 493
BshVI ATCGAT 2 cut(s) 544, 603
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 314, 405, 428
BsmFI GGGAC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 283
BspACI CCGC 2 cut(s) 300, 346
BspDI ATCGAT 2 cut(s) 544, 603
BspLI GGNNCC 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 527
BspT104I TTCGAA 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 252, 455
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 102, 418
Bst6I CTCTTC 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 525
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 225, 398
BstV2I GAAGAC 1 cut(s) 332
Bsu15I ATCGAT 2 cut(s) 544, 603
BsuTUI ATCGAT 2 cut(s) 544, 603
Cac8I GCNNGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 111
ClaI ATCGAT 2 cut(s) 544, 603
Csp6I GTAC 2 cut(s) 163, 419
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 230, 345, 409, 462, 523
CviKI_1 RGCY 5 cut(s) 230, 345, 409, 462, 523
CviQI GTAC 2 cut(s) 163, 419
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 225
EcoRV GATATC 1 cut(s) 601
FaeI CATG 1 cut(s) 161
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 301, 346
Fsp4HI GCNGC 2 cut(s) 301, 346
FspBI CTAG 2 cut(s) 446, 524
GluI GCNGC 2 cut(s) 301, 346
GsuI CTGGAG 1 cut(s) 438
HapII CCGG 1 cut(s) 399
Hin1II CATG 1 cut(s) 161
HinfI GANTC 2 cut(s) 504, 541
HpaII CCGG 1 cut(s) 399
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 111, 589
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 2 cut(s) 111, 589
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 2 cut(s) 102, 418
HpyCH4V TGCA 6 cut(s) 59, 80, 137, 368, 510, 550
Hsp92II CATG 1 cut(s) 161
LpnPI CCDG 6 cut(s) 108, 212, 233, 239, 412, 468
LweI GCATC 3 cut(s) 89, 366, 458
MaeI CTAG 2 cut(s) 446, 524
MaeIII GTNAC 2 cut(s) 412, 488
MbiI CCGCTC 1 cut(s) 300
MboII GAAGA 3 cut(s) 40, 48, 337
MluCI AATT 5 cut(s) 278, 351, 390, 513, 533
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 4 cut(s) 133, 265, 318, 453
MroXI GAANNNNTTC 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 2 cut(s) 227, 400
MvaI CCWGG 1 cut(s) 227
NciI CCSGG 1 cut(s) 400
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 144
NspV TTCGAA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 541
PkrI GCNGC 2 cut(s) 302, 347
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
PsiI TTATAA 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 111
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
RsaI GTAC 2 cut(s) 164, 420
RsaNI GTAC 2 cut(s) 163, 419
RseI CAYNNNNRTG 1 cut(s) 353
SatI GCNGC 2 cut(s) 301, 346
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 2 cut(s) 227, 400
SetI ASST 2 cut(s) 310, 525
SfaNI GCATC 3 cut(s) 89, 366, 458
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 5 cut(s) 278, 351, 390, 513, 533
SsiI CCGC 2 cut(s) 300, 346
SspMI CTAG 2 cut(s) 446, 524
StyD4I CCNGG 2 cut(s) 225, 398
TaaI ACNGT 2 cut(s) 102, 418
TaqI TCGA 3 cut(s) 283, 544, 603
TasI AATT 5 cut(s) 278, 351, 390, 513, 533
TatI WGTACW 1 cut(s) 162
TauI GCSGC 2 cut(s) 303, 348
TfiI GAWTC 1 cut(s) 541
TspDTI ATGAA 5 cut(s) 167, 338, 554, 569, 578
VpaK11BI GGWCC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 2 cut(s) 446, 524
ZrmI AGTACT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.