pycom10g04870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013607
Physical Location & Seq
Reverse (-)
5140497 .. 5141726
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g04870.2

Sequence Viewer

Length: 753 bp
ATGGCCAACAAAACAAAACCAAGTGCACGAACCCTCTGTAGTTTCTCAGTGCCAGAACCATTTCTTTTGTTTCTTCTCTGTTTTTCTTCTTCTCTCCTCGAACTCAACTCCGGTGGGCCAAAGATGGAGGAAGAAGGCACAAGAGCCTTGGGGTTGAAGGTAAGTAGAGATGCCAAAATCCTATATGCAACATTGTTTCCTGTGTTGACGTCTCTGCTCATGGTAGTTCTGTTCCTGTGGACCATTACGTCGGAATCTGGGCCTGCAGACAGGCCGTGGATGAAAAGGGAGTCGAACAACCGGGCATTCTGCGTCGGACTTCTGACGATAGTTCTCGGTTTTCTGTTTTTGGTTGCTGGTCTTCCTTTACTGGTAGACTTGGTCATAAAATTCTCAGAACAATTGCAGAGGAAGCAGGAGGAGACCAGGAAACCTCAAAATCAAGCAGGGAAGCTGAAGACAATATGTATCGTCAGCCGCATAGTCGTGAGTATCATCGCAATGGTCATGCTAGCATGGGCAATTAACACGGGATTTAGGCTTGCAACTGAACCTAAAAGAGAAGACAAATATTTTCCTCTAGCATCCCCAGTTGGTGTAGTGACTATTATGTTTGGCTTCACTTACTCTATCATCGGACTCTGCGTAATTGCAGAGCTAGCGCTCGAGTTGACAAATCAGTTCCAAACGACAGAGGAAAATGAAATTGTTAATCATCAAGTACGCATAATAAAGGTCAAATGTTTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

27.87

Weight (kDa)

9.05

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 247
AatII GACGTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 478
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 389
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 209
AfaI GTAC 1 cut(s) 723
AfeI AGCGCT 1 cut(s) 663
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 2 cut(s) 454, 658
AluI AGCT 2 cut(s) 454, 658
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 2 cut(s) 216, 416
Alw44I GTGCAC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 665
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 4 cut(s) 3, 116, 260, 272
ApaLI GTGCAC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 389
Asp700I GAANNNNTTC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 3 cut(s) 116, 240, 260
AsuC2I CCSGG 1 cut(s) 302
AsuNHI GCTAGC 2 cut(s) 511, 658
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 1 cut(s) 240
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 3 cut(s) 353, 464, 570
Bbv12I GWGCWC 1 cut(s) 28
BccI CCATC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 427
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 216, 416
BfaI CTAG 3 cut(s) 512, 581, 659
BfmI CTRYAG 2 cut(s) 37, 264
BfoI RGCGCY 1 cut(s) 665
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 2 cut(s) 302, 427
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 3 cut(s) 116, 240, 260
BmrFI CCNGG 2 cut(s) 302, 427
BmrI ACTGGG 1 cut(s) 584
BmsI GCATC 2 cut(s) 160, 593
BmtI GCTAGC 2 cut(s) 515, 662
BmuI ACTGGG 1 cut(s) 584
BpiI GAAGAC 3 cut(s) 353, 464, 570
BpuMI CCSGG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 147, 275
BsaWI WCCGGW 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 375, 590
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 147, 275
BseGI GGATG 2 cut(s) 285, 584
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 60, 408
BseNI ACTGG 2 cut(s) 375, 590
BseRI GAGGAG 2 cut(s) 86, 434
BseSI GKGCMC 1 cut(s) 28
BshFI GGCC 4 cut(s) 5, 118, 262, 274
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 2 cut(s) 111, 301
BsmAI GTCTC 2 cut(s) 216, 416
BsmBI CGTCTC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 4 cut(s) 5, 118, 262, 274
Bso31I GGTCTC 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 28
BspACI CCGC 1 cut(s) 478
BspANI GGCC 4 cut(s) 5, 118, 262, 274
BspCNI CTCAG 2 cut(s) 59, 407
BspMAI CTGCAG 1 cut(s) 268
BspOI GCTAGC 2 cut(s) 515, 662
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 375, 590
BssECI CCNNGG 2 cut(s) 147, 275
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 427
BstACI GRCGYC 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 264, 513, 543, 660
BstDEI CTNAG 2 cut(s) 46, 394
BstDSI CCRYGG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 285, 584
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstMAI GTCTC 2 cut(s) 216, 416
BstMWI GCNNNNNNNGC 2 cut(s) 412, 659
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 300, 425
BstSFI CTRYAG 2 cut(s) 37, 264
BstSLI GKGCMC 1 cut(s) 28
BstV2I GAAGAC 3 cut(s) 353, 464, 570
BsuRI GGCC 4 cut(s) 5, 118, 262, 274
BtgI CCRYGG 1 cut(s) 275
BtgZI GCGATG 1 cut(s) 481
BtsCI GGATG 2 cut(s) 285, 584
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 264, 513, 543, 660
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 3 cut(s) 116, 240, 260
CseI GACGC 1 cut(s) 301
Csp6I GTAC 1 cut(s) 722
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 3 cut(s) 220, 508, 516
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 2 cut(s) 46, 394
DrdI GACNNNNNNGTC 1 cut(s) 247
DseDI GACNNNNNNGTC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 240
Eco47III AGCGCT 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 476
Eco88I CYCGRG 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 223, 511, 519
FatI CATG 3 cut(s) 219, 507, 515
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 292, 571
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 3 cut(s) 512, 581, 659
GlaI GCGC 1 cut(s) 663
GluI GCNGC 1 cut(s) 478
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 4 cut(s) 5, 118, 262, 274
HapII CCGG 2 cut(s) 111, 301
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 664
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 3 cut(s) 223, 511, 519
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HincII GTYRAC 2 cut(s) 207, 672
HindII GTYRAC 2 cut(s) 207, 672
HinfI GANTC 3 cut(s) 254, 290, 639
HpaII CCGG 2 cut(s) 111, 301
Hpy166II GTNNAC 5 cut(s) 26, 207, 240, 376, 672
Hpy188I TCNGA 5 cut(s) 253, 317, 324, 397, 638
Hpy188III TCNNGA 1 cut(s) 487
Hpy8I GTNNAC 5 cut(s) 26, 207, 240, 376, 672
Hpy99I CGWCG 2 cut(s) 253, 317
HpyAV CCTTC 2 cut(s) 128, 151
HpyCH4IV ACGT 2 cut(s) 209, 248
HpyCH4V TGCA 6 cut(s) 26, 188, 266, 406, 545, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 412, 659
HpyF3I CTNAG 2 cut(s) 46, 394
HpySE526I ACGT 2 cut(s) 209, 248
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 223, 511, 519
HspAI GCGC 1 cut(s) 662
LweI GCATC 2 cut(s) 160, 593
MaeI CTAG 3 cut(s) 512, 581, 659
MaeII ACGT 2 cut(s) 209, 248
MaeIII GTNAC 1 cut(s) 601
MboII GAAGA 7 cut(s) 65, 78, 81, 143, 353, 469, 575
MfeI CAATTG 1 cut(s) 401
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 389, 401, 522, 648, 705
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 299, 633
MmeI TCCRAC 2 cut(s) 231, 295
MnlI CCTC 8 cut(s) 44, 107, 121, 402, 412, 444, 588, 688
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 60
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 525, 711
MslI CAYNNNNRTG 2 cut(s) 485, 500
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 111, 301
MspR9I CCNGG 2 cut(s) 302, 427
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 412, 659
NciI CCSGG 1 cut(s) 302
NheI GCTAGC 2 cut(s) 511, 658
NlaIII CATG 3 cut(s) 223, 511, 519
NmuCI GTSAC 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 254
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 2 cut(s) 298, 633
PpsI GAGTC 2 cut(s) 298, 633
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PspPI GGNCC 3 cut(s) 116, 240, 260
PspXI VCTCGAGB 1 cut(s) 665
PstI CTGCAG 1 cut(s) 268
PsyI GACNNNGTC 1 cut(s) 380
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
RseI CAYNNNNRTG 2 cut(s) 485, 500
SaqAI TTAA 2 cut(s) 525, 711
SatI GCNGC 1 cut(s) 478
Sau96I GGNCC 3 cut(s) 116, 240, 260
SchI GAGTC 2 cut(s) 299, 633
ScrFI CCNGG 2 cut(s) 302, 427
SduI GDGCHC 1 cut(s) 28
SetI ASST 8 cut(s) 162, 212, 251, 436, 456, 556, 660, 738
SfaNI GCATC 2 cut(s) 160, 593
SfcI CTRYAG 2 cut(s) 37, 264
Sfr274I CTCGAG 1 cut(s) 665
SinI GGWCC 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 665
SmiMI CAYNNNNRTG 2 cut(s) 485, 500
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 5 cut(s) 389, 401, 522, 648, 705
SsiI CCGC 1 cut(s) 478
SspI AATATT 1 cut(s) 572
SspMI CTAG 3 cut(s) 512, 581, 659
StyD4I CCNGG 2 cut(s) 300, 425
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 2 cut(s) 212, 251
TaqI TCGA 3 cut(s) 99, 293, 666
TasI AATT 5 cut(s) 389, 401, 522, 648, 705
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 525, 711
Tru9I TTAA 2 cut(s) 525, 711
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 601
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 2 cut(s) 296, 717
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 380
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 389
XhoI CTCGAG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 3 cut(s) 512, 581, 659
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.