Rroxscaffold_7G00200310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013607
Physical Location & Seq
Reverse (-)
47628178 .. 47629754
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200310.1

Sequence Viewer

Length: 663 bp
ATGGAGGAGTGTGTAGTCATAAGATGGAAGATTAGAAGAGATGCCAAAAGCATATATGCAACCCCCTTTGGTGTATTTGCATCTTTCATCATTGTAATACTGTTTATGTGGACCATTTGGTCTGGATTTGAAGTTGCAGAGGAACCAAGAATGAACCATGAGTACTACAACAATAGTTGGGCAGTCTTTGGTGGAGTGCTTACCATAGTTCTTGGTTTCTTTTTCCTGGCTGTTGGGTTTCCTATACTAGCAGACTTGTTTGTGAAGTTTTCTGAACAACTTCGAAACCCGGAGGAGAGTGGCATACATCAAGGAGGGAAGATGAAGACGATATGTATCGTCAGCCGCATAATTGTGAGTTTGATTGCAATGTTGATGCTAGTATGGGCAATTTACACTGGGTTTAGGCTTGTAACTGAACCAATAAAAGGCACATATTATCCTCTAGCATCCCCAGTTGGCGTTGTTAGTATTATGTTTGGTGTCATTTACTTAATCATTGGACTCTGCACAATTGTAGAGCTAGCAGTAGAATTGACGAAGCGATTGCAAGGGAAAGTGAAGAACGAAATAGGAATATGCATATCATGTTCATACGTGGATACCACTTCAGTTCCTTTAGCAATCTTGGTCAAAACTGCTATTAGGTTTGCCCTCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

24.73

Weight (kDa)

8.57

Isoelectric Point (pI)

38.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AciI CCGC 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 1 cut(s) 131
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 1 cut(s) 523
AluI AGCT 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 111
AsuC2I CCSGG 1 cut(s) 290
AsuII TTCGAA 1 cut(s) 283
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 332
BccI CCATC 1 cut(s) 18
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 1 cut(s) 595
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 5 cut(s) 248, 380, 446, 524, 661
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
BmcAI AGTACT 1 cut(s) 164
Bme1390I CCNGG 2 cut(s) 227, 290
Bme18I GGWCC 1 cut(s) 111
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 227, 290
BmrI ACTGGG 2 cut(s) 408, 449
BmsI GCATC 4 cut(s) 31, 89, 366, 458
BmtI GCTAGC 1 cut(s) 527
BmuI ACTGGG 2 cut(s) 408, 449
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 283
BpuMI CCSGG 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 598
BsaBI GATNNNNATC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 403, 455
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 335
BseBI CCWGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 449
BseJI GATNNNNATC 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 403, 455
BseRI GAGGAG 2 cut(s) 20, 308
BsgI GTGCAG 1 cut(s) 493
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 283
BspACI CCGC 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 144
BspOI GCTAGC 1 cut(s) 527
BspT104I TTCGAA 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 403, 455
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 598
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 525
BstF5I GGATG 1 cut(s) 449
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 225, 288
BstV2I GAAGAC 1 cut(s) 332
BsuI GTATCC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 163
CviAII CATG 2 cut(s) 158, 588
CviJI RGCY 4 cut(s) 230, 345, 409, 523
CviKI_1 RGCY 4 cut(s) 230, 345, 409, 523
CviQI GTAC 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 584
FaeI CATG 2 cut(s) 161, 591
FatI CATG 2 cut(s) 157, 587
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 1 cut(s) 436
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 5 cut(s) 248, 380, 446, 524, 661
GluI GCNGC 1 cut(s) 346
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 161, 591
HinfI GANTC 1 cut(s) 504
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4IV ACGT 1 cut(s) 597
HpyCH4V TGCA 7 cut(s) 59, 80, 137, 368, 510, 550, 582
HpySE526I ACGT 1 cut(s) 597
Hsp92II CATG 2 cut(s) 161, 591
LpnPI CCDG 6 cut(s) 108, 212, 239, 303, 384, 468
LweI GCATC 4 cut(s) 31, 89, 366, 458
MaeI CTAG 5 cut(s) 248, 380, 446, 524, 661
MaeII ACGT 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 412
MboII GAAGA 5 cut(s) 40, 48, 331, 337, 574
MfeI CAATTG 1 cut(s) 513
MluCI AATT 4 cut(s) 351, 390, 513, 533
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 4 cut(s) 133, 286, 308, 453
Mph1103I ATGCAT 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 227, 290
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 227
NciI CCSGG 1 cut(s) 290
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 2 cut(s) 161, 591
NlaIV GGNNCC 1 cut(s) 144
NsiI ATGCAT 1 cut(s) 584
NspV TTCGAA 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 1 cut(s) 498
PpsI GAGTC 1 cut(s) 498
Ppu21I YACGTR 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 111
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 111
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 2 cut(s) 227, 290
SetI ASST 3 cut(s) 525, 600, 650
SfaNI GCATC 4 cut(s) 31, 89, 366, 458
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 1 cut(s) 111
SmiMI CAYNNNNRTG 1 cut(s) 353
Sse9I AATT 4 cut(s) 351, 390, 513, 533
SsiI CCGC 1 cut(s) 346
SspMI CTAG 5 cut(s) 248, 380, 446, 524, 661
StyD4I CCNGG 2 cut(s) 225, 288
TaaI ACNGT 1 cut(s) 102
TaiI ACGT 1 cut(s) 600
TaqI TCGA 1 cut(s) 283
TasI AATT 4 cut(s) 351, 390, 513, 533
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 348
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 1 cut(s) 403
TspDTI ATGAA 4 cut(s) 76, 167, 338, 582
TspRI CASTG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 5 cut(s) 248, 380, 446, 524, 661
ZrmI AGTACT 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.