MD10G1063000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013607
Physical Location & Seq
Reverse (-)
8537630 .. 8538822
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1063000.v1.1.491

Sequence Viewer

Length: 627 bp
ATGGAGGAAGAAGGCATAAGAGCCTTGGGGTTGAAGGTAAGTAGAGATGCCAAAACCCTATGTGCAACATTGTTTCCTGTGTTGACGTCTCTGCTCATGGTAGTTCTGTTCCTGTGGACCATTACGTCGGAATCTGGGCCTGCAGACAGGCCGGGGATAAAAAGGGAGGCGAACAACTGGGCATTCTGCGTCGGACTTCTGACGATAGTTCTCGGTTTCCTGTTTTTGGTTGCTGGTCTTCCTTTACTGGTAGACTTGGTCATAAAATTCTCAGAACAATTGCAGAGGAAGCAGGAGGAGACCAGGAAACCTCAAAATCAAGGGAAGCTGAAGACGATATGTATCGTCAGCCGCATAGTCGTGAGTATCATCGCAATGGTCATGCTAGCATGGGCAATTAACACTGGACTTAGGCTTGCAACTGAACCTAGAAGAGAAGACAAATATTTTCCTCTAGCATCCCCAGTTGGTGTAGTGACTATTATGTTTGGCTTCACTTACTCTATCATCGGACTCTGCATAATTGCAGAGCTAGCGCTCGAGTTGACAAAGCAGTTCCAAACGACAGAGAAAAATGAAATTGTTAATCATCAAGTATGCATAATAAACGTCACATGTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.16

Weight (kDa)

8.55

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AatII GACGTC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 252
AciI CCGC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 266
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 86
AfeI AGCGCT 1 cut(s) 537
AfiI CCNNNNNNNGG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 614
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 328, 532
AluI AGCT 2 cut(s) 328, 532
Alw26I GTCTC 2 cut(s) 93, 293
Ama87I CYCGRG 1 cut(s) 539
Aor51HI AGCGCT 1 cut(s) 537
AoxI GGCC 2 cut(s) 137, 149
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 2 cut(s) 117, 137
AsuC2I CCSGG 1 cut(s) 153
AsuNHI GCTAGC 2 cut(s) 385, 532
AvaI CYCGRG 1 cut(s) 539
AvaII GGWCC 1 cut(s) 117
BbsI GAAGAC 3 cut(s) 230, 338, 444
BciT130I CCWGG 1 cut(s) 304
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 93, 293
BfaI CTAG 4 cut(s) 386, 429, 455, 533
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 539
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 153, 304
Bme18I GGWCC 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 539
BmgT120I GGNCC 2 cut(s) 117, 137
BmrFI CCNGG 2 cut(s) 153, 304
BmrI ACTGGG 2 cut(s) 187, 458
BmsI GCATC 2 cut(s) 37, 467
BmtI GCTAGC 2 cut(s) 389, 536
BmuI ACTGGG 2 cut(s) 187, 458
BpiI GAAGAC 3 cut(s) 230, 338, 444
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 341
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 24, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 4 cut(s) 182, 252, 409, 464
Bse3DI GCAATG 1 cut(s) 381
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 24, 152
BseGI GGATG 1 cut(s) 458
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 182, 252, 409, 464
BseRI GAGGAG 1 cut(s) 311
BshFI GGCC 2 cut(s) 139, 151
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 2 cut(s) 93, 293
BsmBI CGTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 2 cut(s) 139, 151
Bso31I GGTCTC 1 cut(s) 293
BsoBI CYCGRG 1 cut(s) 539
BspACI CCGC 1 cut(s) 352
BspANI GGCC 2 cut(s) 139, 151
BspCNI CTCAG 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 145
BspOI GCTAGC 2 cut(s) 389, 536
BspTNI GGTCTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 4 cut(s) 182, 252, 409, 464
BssECI CCNNGG 2 cut(s) 24, 152
BssNI GRCGYC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 427
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 4 cut(s) 141, 387, 417, 534
BstDEI CTNAG 2 cut(s) 271, 410
BstF5I GGATG 1 cut(s) 458
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstMAI GTCTC 2 cut(s) 93, 293
BstMWI GCNNNNNNNGC 2 cut(s) 289, 533
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 2 cut(s) 151, 302
BstSFI CTRYAG 1 cut(s) 141
BstV2I GAAGAC 3 cut(s) 230, 338, 444
BsuRI GGCC 2 cut(s) 139, 151
BtgZI GCGATG 1 cut(s) 355
BtsCI GGATG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 4 cut(s) 141, 387, 417, 534
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 2 cut(s) 117, 137
CseI GACGC 1 cut(s) 178
CviAII CATG 4 cut(s) 97, 382, 390, 615
CviJI RGCY 8 cut(s) 23, 139, 151, 328, 351, 415, 492, 532
CviKI_1 RGCY 8 cut(s) 23, 139, 151, 328, 351, 415, 492, 532
DdeI CTNAG 2 cut(s) 271, 410
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 117
Eco47III AGCGCT 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 302
EcoT14I CCWWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 4 cut(s) 100, 385, 393, 618
FatI CATG 4 cut(s) 96, 381, 389, 614
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 1 cut(s) 352
FspBI CTAG 4 cut(s) 386, 429, 455, 533
GlaI GCGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 352
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 2 cut(s) 139, 151
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 100, 385, 393, 618
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HincII GTYRAC 2 cut(s) 84, 546
HindII GTYRAC 2 cut(s) 84, 546
HinfI GANTC 2 cut(s) 131, 513
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 4 cut(s) 84, 117, 253, 546
Hpy188I TCNGA 5 cut(s) 130, 194, 201, 274, 512
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 4 cut(s) 84, 117, 253, 546
Hpy99I CGWCG 2 cut(s) 130, 194
HpyAV CCTTC 2 cut(s) 5, 28
HpyCH4IV ACGT 3 cut(s) 86, 125, 609
HpyCH4V TGCA 7 cut(s) 65, 143, 283, 419, 519, 527, 600
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 533
HpyF3I CTNAG 2 cut(s) 271, 410
HpySE526I ACGT 3 cut(s) 86, 125, 609
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 100, 385, 393, 618
HspAI GCGC 1 cut(s) 536
LweI GCATC 2 cut(s) 37, 467
MaeI CTAG 4 cut(s) 386, 429, 455, 533
MaeII ACGT 3 cut(s) 86, 125, 609
MaeIII GTNAC 2 cut(s) 475, 610
MboII GAAGA 5 cut(s) 20, 230, 343, 444, 449
MfeI CAATTG 1 cut(s) 278
MluCI AATT 5 cut(s) 266, 278, 396, 522, 579
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 2 cut(s) 108, 172
MnlI CCTC 5 cut(s) 160, 279, 289, 321, 462
Mph1103I ATGCAT 1 cut(s) 602
MseI TTAA 2 cut(s) 399, 585
MslI CAYNNNNRTG 2 cut(s) 359, 374
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 153, 304
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 2 cut(s) 289, 533
NciI CCSGG 1 cut(s) 153
NheI GCTAGC 2 cut(s) 385, 532
NlaIII CATG 4 cut(s) 100, 385, 393, 618
NmuCI GTSAC 2 cut(s) 475, 610
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 1 cut(s) 618
PaeR7I CTCGAG 1 cut(s) 539
PciI ACATGT 1 cut(s) 614
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 131
PflFI GACNNNGTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 353
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PscI ACATGT 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspPI GGNCC 2 cut(s) 117, 137
PspXI VCTCGAGB 1 cut(s) 539
PstI CTGCAG 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 359, 374
SaqAI TTAA 2 cut(s) 399, 585
SatI GCNGC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 117, 137
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 2 cut(s) 153, 304
SetI ASST 8 cut(s) 39, 89, 128, 313, 330, 430, 534, 612
SfaNI GCATC 2 cut(s) 37, 467
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 117
SlaI CTCGAG 1 cut(s) 539
SmiMI CAYNNNNRTG 2 cut(s) 359, 374
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 266, 278, 396, 522, 579
SsiI CCGC 1 cut(s) 352
SspI AATATT 1 cut(s) 446
SspMI CTAG 4 cut(s) 386, 429, 455, 533
StyD4I CCNGG 2 cut(s) 151, 302
StyI CCWWGG 1 cut(s) 24
TaiI ACGT 3 cut(s) 89, 128, 612
TaqI TCGA 1 cut(s) 540
TasI AATT 5 cut(s) 266, 278, 396, 522, 579
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 399, 585
Tru9I TTAA 2 cut(s) 399, 585
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 475, 610
Tsp45I GTSAC 2 cut(s) 475, 610
TspDTI ATGAA 1 cut(s) 591
TspRI CASTG 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 266
XceI RCATGY 1 cut(s) 618
XhoI CTCGAG 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 4 cut(s) 386, 429, 455, 533
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.