MD05G1055700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013607
Physical Location & Seq
Reverse (-)
9543519 .. 9544462
944 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1055700.v1.1.491

Sequence Viewer

Length: 627 bp
ATGGAGGAAGAAGGCATAAGAGCCTTCGGGTGGAAGCCCATCGGAGATGCCAAAACCCTATGTGCAACATTGTTTTCTGTGTTGACGTCTCTTGTCATGGTACTTCTGTTCCTGTGGACCATTTGGTCCGAATCTGGAGTTGCAGACACGCCGGGGATAAAGCGGGAGTCGAACAATTGGGCATTCTGCGTCGGAGTTCTAACTCTAGTTCTCGGTTTCTTGTTTTTGGCTGCTGGTCTTTCTTTACTAGCAAACTTGGTTATGAAACTCTCGGAACAATTGCAGAAGAGGCAGGAGGAGTCCAGGAAACCTCAAGCTCAAGGGAAGCTGAAGACGATATGCATTGTCAGCCGCATAGTTGTGAGTATCATCGCAATGATCATGCTGGCATGGGCAATCAAAACTGGATTTAGGCTTGCAACTGAACCTAGAAGAGAAGGCAAATATTATCCTCTAGCATCGCCAGTTGGTGTCGTGACTATCATGTTTGGCTTCACTTATTCTATCATCGGACTCTGCATAATTGCAGAGCTAGCAGTGGAGTTGACAAAGCAGTTGCAAACGACAGAGAACAATGAAAATGTAAATCAACAAGTACGCAAAATAAACGTCAAATGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.06

Weight (kDa)

9.16

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AatII GACGTC 1 cut(s) 89
AciI CCGC 2 cut(s) 163, 352
AcuI CTGAAG 1 cut(s) 350
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 2 cut(s) 102, 597
AfiI CCNNNNNNNGG 1 cut(s) 30
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 3 cut(s) 317, 328, 532
AluI AGCT 3 cut(s) 317, 328, 532
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 594, 626
AspS9I GGNCC 2 cut(s) 117, 126
AsuC2I CCSGG 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 532
AvaII GGWCC 2 cut(s) 117, 126
BaeI ACNNNNGTAYC 2 cut(s) 92, 125
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 378
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 5 cut(s) 206, 248, 429, 455, 533
BisI GCNGC 2 cut(s) 231, 352
BlsI GCNGC 2 cut(s) 232, 353
Bme1390I CCNGG 2 cut(s) 153, 304
Bme18I GGWCC 2 cut(s) 117, 126
BmgT120I GGNCC 2 cut(s) 117, 126
BmrFI CCNGG 2 cut(s) 153, 304
BmsI GCATC 2 cut(s) 37, 467
BmtI GCTAGC 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 297, 303
BpuMI CCSGG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 409, 464
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 381
BseNI ACTGG 2 cut(s) 409, 464
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 378
BspACI CCGC 2 cut(s) 163, 352
BspOI GCTAGC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 2 cut(s) 409, 464
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 378
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 304
Bst6I CTCTTC 2 cut(s) 281, 427
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 387, 417, 534
BstKTI GATC 1 cut(s) 381
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 378
BstMWI GCNNNNNNNGC 3 cut(s) 289, 348, 533
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 151, 302
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 338
BtgZI GCGATG 2 cut(s) 355, 444
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 387, 417, 534
Cfr13I GGNCC 2 cut(s) 117, 126
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 101, 596
CviAII CATG 4 cut(s) 97, 382, 390, 484
CviJI RGCY 9 cut(s) 23, 37, 230, 317, 328, 351, 415, 492, 532
CviKI_1 RGCY 9 cut(s) 23, 37, 230, 317, 328, 351, 415, 492, 532
CviQI GTAC 2 cut(s) 101, 596
DpnI GATC 1 cut(s) 380
DpnII GATC 1 cut(s) 378
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 281, 427
EarI CTCTTC 2 cut(s) 281, 427
Eco47I GGWCC 2 cut(s) 117, 126
Eco57I CTGAAG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 302
EcoT22I ATGCAT 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 4 cut(s) 100, 385, 393, 487
FatI CATG 4 cut(s) 96, 381, 389, 483
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 231, 352
Fsp4HI GCNGC 2 cut(s) 231, 352
FspBI CTAG 5 cut(s) 206, 248, 429, 455, 533
GluI GCNGC 2 cut(s) 231, 352
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 1 cut(s) 152
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 100, 385, 393, 487
HincII GTYRAC 2 cut(s) 84, 546
HindII GTYRAC 2 cut(s) 84, 546
HinfI GANTC 4 cut(s) 131, 167, 299, 513
HpaII CCGG 1 cut(s) 152
Hpy166II GTNNAC 3 cut(s) 84, 117, 546
Hpy188I TCNGA 5 cut(s) 44, 130, 194, 274, 512
Hpy188III TCNNGA 2 cut(s) 135, 475
Hpy8I GTNNAC 3 cut(s) 84, 117, 546
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 5, 34, 431
HpyCH4IV ACGT 2 cut(s) 86, 609
HpyCH4V TGCA 8 cut(s) 65, 143, 283, 342, 419, 519, 527, 559
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 348, 533
HpySE526I ACGT 2 cut(s) 86, 609
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 100, 385, 393, 487
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 37, 467
MaeI CTAG 5 cut(s) 206, 248, 429, 455, 533
MaeII ACGT 2 cut(s) 86, 609
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 380
MboI GATC 1 cut(s) 378
MboII GAAGA 4 cut(s) 20, 298, 343, 444
MfeI CAATTG 2 cut(s) 175, 278
MluCI AATT 3 cut(s) 175, 278, 522
MlyI GAGTC 3 cut(s) 176, 308, 507
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 282, 289, 321, 462
Mph1103I ATGCAT 1 cut(s) 344
MslI CAYNNNNRTG 2 cut(s) 359, 374
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 153, 304
MunI CAATTG 2 cut(s) 175, 278
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 289, 348, 533
NciI CCSGG 1 cut(s) 153
NdeII GATC 1 cut(s) 378
NheI GCTAGC 1 cut(s) 532
NlaIII CATG 4 cut(s) 100, 385, 393, 487
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 344
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 2 cut(s) 232, 353
PleI GAGTC 3 cut(s) 175, 307, 507
PpsI GAGTC 3 cut(s) 175, 307, 507
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspPI GGNCC 2 cut(s) 117, 126
RsaI GTAC 2 cut(s) 102, 597
RsaNI GTAC 2 cut(s) 101, 596
RseI CAYNNNNRTG 2 cut(s) 359, 374
SatI GCNGC 2 cut(s) 231, 352
Sau3AI GATC 1 cut(s) 378
Sau96I GGNCC 2 cut(s) 117, 126
SchI GAGTC 3 cut(s) 176, 308, 507
ScrFI CCNGG 2 cut(s) 153, 304
SetI ASST 7 cut(s) 89, 313, 319, 330, 430, 534, 612
SfaNI GCATC 2 cut(s) 37, 467
SinI GGWCC 2 cut(s) 117, 126
SmiMI CAYNNNNRTG 2 cut(s) 359, 374
SmlI CTYRAG 2 cut(s) 312, 318
SmoI CTYRAG 2 cut(s) 312, 318
Sse9I AATT 3 cut(s) 175, 278, 522
SsiI CCGC 2 cut(s) 163, 352
SspI AATATT 1 cut(s) 446
SspMI CTAG 5 cut(s) 206, 248, 429, 455, 533
StyD4I CCNGG 2 cut(s) 151, 302
TaiI ACGT 2 cut(s) 89, 612
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 175, 278, 522
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 278, 591
TspRI CASTG 1 cut(s) 543
VpaK11BI GGWCC 2 cut(s) 117, 126
XspI CTAG 5 cut(s) 206, 248, 429, 455, 533
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.