pycom05g04610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013607
Physical Location & Seq
Reverse (-)
5428318 .. 5429210
893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g04610.2

Sequence Viewer

Length: 630 bp
ATGGAGGAAGAAGCCATAAGAGCCCTCCGGTGGAAGTTCAGAGGAGATGCCAAGACCCGATGTGCAAGATTGTTTTCTGTGTTGACGTCTCTTGTCATGGTAGTTCTGTTCCTGTGGACCATTTGGTCCGAATCTGGAGTTGCAGACACGCCGGGGATAAAGCGGGAGTCGAACAATTGGGCATTCTGCGTCGGAGTTCTAACTATAGTTCTCGGTTTCGTGTTTTTGGCTGCTGGTCTTCCTTTACTTGCAAACTTGGTTATGAAACTCTCAGAACAATTGCAGAAGAAGCAGGAGGAGATCAGGAAGCCTCAAGCTCAAGCAGGGAAGCTGAAGACGATATGCATCGTCAGCCGCATGGTTGTGAGTATCGTCGCAATGATCATGCTGGCATGGGCAATCAACACTGGATTTAGGCTTGCAACTGAACCTAGAAGAGAAGGCAAATATTATCCTCTAGCATCCCCAGTTGGTGTCGTGACTATCATGTTTGGCTTCACTTATTCTATCATCGGACTGTGCATAATTGCAGAGCTAGCAGTGGAGTTGACAAGGCAGTTGCAAACGACAGAGAAAAATGAAAATGTTAATCAACAAGTACGCAAAATAAACGTCAAATCTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

9.73

Isoelectric Point (pI)

34.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 124
AatII GACGTC 1 cut(s) 89
AciI CCGC 2 cut(s) 163, 355
AcuI CTGAAG 1 cut(s) 353
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 1 cut(s) 30
AluBI AGCT 3 cut(s) 317, 331, 535
AluI AGCT 3 cut(s) 317, 331, 535
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 597, 629
AspS9I GGNCC 2 cut(s) 117, 126
AsuC2I CCSGG 1 cut(s) 153
AsuNHI GCTAGC 1 cut(s) 535
AvaII GGWCC 2 cut(s) 117, 126
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 230, 341
BbvI GCAGC 1 cut(s) 217
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 3 cut(s) 432, 458, 536
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 231, 355
BlsI GCNGC 2 cut(s) 232, 356
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 117, 126
BmgT120I GGNCC 2 cut(s) 117, 126
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 37, 354, 470
BmtI GCTAGC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 461
BpiI GAAGAC 2 cut(s) 230, 341
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 297, 303
BpuMI CCSGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 412, 467
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 461
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 412, 467
BseRI GAGGAG 2 cut(s) 57, 311
BseXI GCAGC 1 cut(s) 217
BsiSI CCGG 2 cut(s) 28, 152
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 300, 381
BspACI CCGC 2 cut(s) 163, 355
BspCNI CTCAG 1 cut(s) 284
BspOI GCTAGC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 412, 467
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 300, 381
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 519
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 390, 420, 537
BstDEI CTNAG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 461
BstKTI GATC 2 cut(s) 303, 384
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 300, 381
BstMWI GCNNNNNNNGC 4 cut(s) 20, 289, 351, 536
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 217
BstV2I GAAGAC 2 cut(s) 230, 341
BtsCI GGATG 1 cut(s) 461
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 405, 546
Cac8I GCNNGC 3 cut(s) 390, 420, 537
Cfr13I GGNCC 2 cut(s) 117, 126
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 599
CviAII CATG 5 cut(s) 97, 358, 385, 393, 487
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 1 cut(s) 271
DpnI GATC 2 cut(s) 302, 383
DpnII GATC 2 cut(s) 300, 381
DrdI GACNNNNNNGTC 1 cut(s) 124
DseDI GACNNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 117, 126
Eco57I CTGAAG 1 cut(s) 353
EcoT22I ATGCAT 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 5 cut(s) 100, 361, 388, 396, 490
FatI CATG 5 cut(s) 96, 357, 384, 392, 486
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 231, 355
FokI GGATG 1 cut(s) 448
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 231, 355
FspBI CTAG 3 cut(s) 432, 458, 536
GluI GCNGC 2 cut(s) 231, 355
GsuI CTGGAG 1 cut(s) 156
HapII CCGG 2 cut(s) 28, 152
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 5 cut(s) 100, 361, 388, 396, 490
HincII GTYRAC 2 cut(s) 84, 549
HindII GTYRAC 2 cut(s) 84, 549
HinfI GANTC 2 cut(s) 131, 167
HpaII CCGG 2 cut(s) 28, 152
Hpy166II GTNNAC 3 cut(s) 84, 117, 549
Hpy188I TCNGA 5 cut(s) 41, 130, 194, 274, 515
Hpy188III TCNNGA 3 cut(s) 135, 304, 478
Hpy8I GTNNAC 3 cut(s) 84, 117, 549
Hpy99I CGWCG 2 cut(s) 194, 377
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 519
HpyCH4IV ACGT 2 cut(s) 86, 612
HpyCH4V TGCA 9 cut(s) 65, 143, 251, 283, 345, 422, 522, 530, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 289, 351, 536
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 2 cut(s) 86, 612
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 5 cut(s) 100, 361, 388, 396, 490
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 2 cut(s) 300, 381
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 3 cut(s) 37, 354, 470
MaeI CTAG 3 cut(s) 432, 458, 536
MaeII ACGT 2 cut(s) 86, 612
MaeIII GTNAC 1 cut(s) 478
MalI GATC 2 cut(s) 302, 383
MboI GATC 2 cut(s) 300, 381
MboII GAAGA 6 cut(s) 20, 230, 298, 346, 447, 612
MfeI CAATTG 2 cut(s) 175, 278
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 3 cut(s) 175, 278, 525
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 5 cut(s) 35, 35, 289, 321, 465
Mph1103I ATGCAT 1 cut(s) 347
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 2 cut(s) 28, 152
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 2 cut(s) 175, 278
Mva1269I GAATGC 1 cut(s) 182
MwoI GCNNNNNNNGC 4 cut(s) 20, 289, 351, 536
NciI CCSGG 1 cut(s) 153
NdeII GATC 2 cut(s) 300, 381
NheI GCTAGC 1 cut(s) 535
NlaIII CATG 5 cut(s) 100, 361, 388, 396, 490
NmuCI GTSAC 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 347
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 232, 356
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 117, 126
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 2 cut(s) 231, 355
Sau3AI GATC 2 cut(s) 300, 381
Sau96I GGNCC 2 cut(s) 117, 126
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 25
SetI ASST 6 cut(s) 89, 319, 333, 433, 537, 615
SfaNI GCATC 3 cut(s) 37, 354, 470
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 2 cut(s) 117, 126
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 312, 318
SmoI CTYRAG 2 cut(s) 312, 318
Sse9I AATT 3 cut(s) 175, 278, 525
SsiI CCGC 2 cut(s) 163, 355
SspI AATATT 1 cut(s) 449
SspMI CTAG 3 cut(s) 432, 458, 536
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 519
TaiI ACGT 2 cut(s) 89, 615
TaqI TCGA 1 cut(s) 170
TasI AATT 3 cut(s) 175, 278, 525
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 2 cut(s) 412, 546
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 278, 594
TspRI CASTG 2 cut(s) 412, 546
VpaK11BI GGWCC 2 cut(s) 117, 126
XspI CTAG 3 cut(s) 432, 458, 536
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.