Rw6G013710

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
25337913 .. 25339192
1280 bp
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UTR
Exon/CDS
Intron
Rw6G013710.1

Sequence Viewer

Length: 546 bp
ATGGAGGAGTGTGTAGTCATAAGATGGAAGATTAGAAGAGATGCCAAAAGCATATATGCAACCCCTTCGGAACCAAGAATGAACCATGAGTACTACAACAATAGTTGCGCAGTCTTTGGTGGAGTGCTTACCATAGTTCTTGGTTTCTTTTTCTTGGCTGTTGGGTTTCCTATACTAGCAGACTTGTTTGTGAAGTTTTCTGAACAACTTCGAAACCCGGAGCAGAGTGGCATACATCAAGGAGGGAAGATAAAGACGATATGTATCGTCAGCCGCATAATTGTGAGTTTGATTGCAATGTTGATGCTAGTATGGGCAATTTACACTGGGTTTAGGCTTGTAACTGAACCAAAAAAAGGCACATATTATCCTCTAGCATCCCCAGTTGGCGTTGTTAGTATTATGTTTGGTGTCATTTACTTTATCATTGGACTCTGCACAATTGTAGAACTAGCAGTAGAATTGACGAAGCGATTGCAAGGGAAAGTGAAGAACGAAATAGTTATTCATCAAGTTCACAATATGGATATCAATTGTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.42

Weight (kDa)

8.99

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013607)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 109
AciI CCGC 1 cut(s) 274
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 110
AsuC2I CCSGG 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 211
BccI CCATC 1 cut(s) 18
BcgI CGANNNNNNTGC 4 cut(s) 48, 82, 457, 491
BcnI CCSGG 1 cut(s) 218
BfaI CTAG 4 cut(s) 176, 308, 374, 452
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 2 cut(s) 336, 377
BmsI GCATC 3 cut(s) 31, 294, 386
BmuI ACTGGG 2 cut(s) 336, 377
Bpu14I TTCGAA 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 331, 383
Bse3DI GCAATG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 263
BseGI GGATG 1 cut(s) 377
BseJI GATNNNNATC 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 303
BseNI ACTGG 2 cut(s) 331, 383
BseRI GAGGAG 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 421
BsiSI CCGG 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 356
Bsp119I TTCGAA 1 cut(s) 211
BspACI CCGC 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 331, 383
Bst6I CTCTTC 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 211
BstF5I GGATG 1 cut(s) 377
BstHHI GCGC 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 86
CviJI RGCY 3 cut(s) 158, 273, 337
CviKI_1 RGCY 3 cut(s) 158, 273, 337
CviQI GTAC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco32I GATATC 1 cut(s) 529
EcoRV GATATC 1 cut(s) 529
FaeI CATG 1 cut(s) 89
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 4 cut(s) 176, 308, 374, 452
FspI TGCGCA 1 cut(s) 109
GlaI GCGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 274
HapII CCGG 1 cut(s) 218
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 432
HpaII CCGG 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 2 cut(s) 70, 202
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 1 cut(s) 75
HpyCH4V TGCA 4 cut(s) 59, 296, 438, 478
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 231, 312, 396
LweI GCATC 3 cut(s) 31, 294, 386
MaeI CTAG 4 cut(s) 176, 308, 374, 452
MaeIII GTNAC 1 cut(s) 340
MboII GAAGA 4 cut(s) 40, 48, 259, 502
MfeI CAATTG 2 cut(s) 441, 532
MluCI AATT 5 cut(s) 279, 318, 441, 461, 532
MlyI GAGTC 1 cut(s) 426
MnlI CCTC 2 cut(s) 236, 381
MroXI GAANNNNTTC 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 281
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 2 cut(s) 441, 532
NciI CCSGG 1 cut(s) 218
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 1 cut(s) 72
NsbI TGCGCA 1 cut(s) 109
NspV TTCGAA 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 72
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 281
SatI GCNGC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 1 cut(s) 426
ScrFI CCNGG 1 cut(s) 218
SfaNI GCATC 3 cut(s) 31, 294, 386
SfuI TTCGAA 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 5 cut(s) 279, 318, 441, 461, 532
SsiI CCGC 1 cut(s) 274
SspMI CTAG 4 cut(s) 176, 308, 374, 452
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 211
TasI AATT 5 cut(s) 279, 318, 441, 461, 532
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 276
TscAI CASTG 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 95, 497
TspRI CASTG 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 4 cut(s) 176, 308, 374, 452
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.