Rorug06G0035600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013607
Physical Location & Seq
Forward (+)
4456028 .. 4456621
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0035600.1

Sequence Viewer

Length: 495 bp
ATGGGTTTCAACAAACAAAACTTAATAGCCGTATGCTCCACAGCTTTGATCCTAATTACTTATGTCCCTCTAGCAAGTACAGTCGAAGACGACAGTGGCTTCCTCAAAGCACACAATGAGATTCGCAAAGAGCACGGTCTCCCGCCACTGCAATGGAATAAAACCTTAGCTGAGTATGCGCAAAATTATGCCAATAAAAGATCTGTGGACTGCGCAATGGAGCATTCGGATGCTCCTTATTCTGAGAACATTGCGAGTGGTTTGGGTATGACCGGTGAAGCAGCGACAAAGTACTGGTGCACCGAGAAAGCCGAATACGACTACAACACAAATAAATGTACCGGTCCTGAGGAAGACGGTTGCCGCCACTACACTATTATAGTTACCAGGATAACAACCCAACTTGGTTGTGCAAGGGCCAAGTGCAAAAATGGCGATATGTTTGTATCCTGCAACTATGATCCTTCTGGAGATTGGGACCAGCGTCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

5.34

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 35 - 153 3.5e-22 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013607)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10440 FvH4_2g10440
malus_domestica MD05G1055700.v1.1 MD10G1063000.v1.1
prunus_persica Prupe.8G083800_v2.0.a1
pyrus_communis pycom05g04610 pycom10g04870
rosa_chinensis RchiOBHm_Chr6g0267941
rosa_laevigata RLG00000013966
rosa_roxburghii Rroxscaffold_7G00200310
rosa_rugosa Rorug06G0035600
rosa_samantha Rh6AG157600 Rh6BG159700 Rh6CG157100 Rh6DG145300
rosa_wichuraiana Rw0G019620 Rw6G013690 Rw6G013710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 180, 214
AciI CCGC 2 cut(s) 143, 364
AclWI GGATC 2 cut(s) 43, 455
AfaI GTAC 3 cut(s) 79, 293, 340
AgeI ACCGGT 2 cut(s) 272, 341
AgsI TTSAA 1 cut(s) 10
AjnI CCWGG 1 cut(s) 386
AluBI AGCT 2 cut(s) 44, 170
AluI AGCT 2 cut(s) 44, 170
Alw21I GWGCWC 2 cut(s) 135, 302
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 43, 455
AoxI GGCC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 281
AsiGI ACCGGT 2 cut(s) 272, 341
AspLEI GCGC 2 cut(s) 181, 215
AspS9I GGNCC 3 cut(s) 344, 417, 478
AsuHPI GGTGA 1 cut(s) 287
AvaII GGWCC 2 cut(s) 344, 478
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 93, 360
Bbv12I GWGCWC 2 cut(s) 135, 302
BbvI GCAGC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 388
BciVI GTATCC 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 143
BfaI CTAG 1 cut(s) 71
BfuI GTATCC 1 cut(s) 457
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 282, 364
BlsI GCNGC 2 cut(s) 283, 365
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 344, 478
BmgT120I GGNCC 3 cut(s) 344, 417, 478
BmiI GGNNCC 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 93, 360
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 272, 341
Bse118I RCCGGY 2 cut(s) 272, 341
Bse1I ACTGG 1 cut(s) 299
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 3 cut(s) 158, 222, 249
BseBI CCWGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 3 cut(s) 158, 222, 249
BseMII CTCAG 3 cut(s) 162, 234, 339
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 293
BshFI GGCC 1 cut(s) 419
BshTI ACCGGT 2 cut(s) 272, 341
BsiHKAI GWGCWC 2 cut(s) 135, 302
BsiSI CCGG 2 cut(s) 273, 342
BslFI GGGAC 2 cut(s) 50, 491
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 50, 491
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 419
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 135, 302
Bsp143I GATC 3 cut(s) 48, 200, 460
BspACI CCGC 2 cut(s) 143, 364
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 3 cut(s) 163, 235, 340
BspLI GGNNCC 1 cut(s) 479
BspPI GGATC 2 cut(s) 43, 455
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 158, 222, 249
BsrFI RCCGGY 2 cut(s) 272, 341
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 2 cut(s) 272, 341
BssMI GATC 3 cut(s) 48, 200, 460
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 4 cut(s) 82, 95, 137, 359
BstDEI CTNAG 4 cut(s) 166, 171, 243, 348
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 2 cut(s) 181, 215
BstKTI GATC 3 cut(s) 51, 203, 463
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 48, 200, 460
BstMWI GCNNNNNNNGC 2 cut(s) 176, 432
BstNI CCWGG 1 cut(s) 388
BstPAI GACNNNNGTC 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 2 cut(s) 93, 360
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 1 cut(s) 200
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 100, 146
CfoI GCGC 2 cut(s) 181, 215
Cfr10I RCCGGY 2 cut(s) 272, 341
Cfr13I GGNCC 3 cut(s) 344, 417, 478
CseI GACGC 1 cut(s) 473
Csp6I GTAC 3 cut(s) 78, 292, 339
CspAI ACCGGT 2 cut(s) 272, 341
CviJI RGCY 6 cut(s) 29, 44, 99, 170, 311, 419
CviKI_1 RGCY 6 cut(s) 29, 44, 99, 170, 311, 419
CviQI GTAC 3 cut(s) 78, 292, 339
DdeI CTNAG 4 cut(s) 166, 171, 243, 348
DpnI GATC 3 cut(s) 50, 202, 462
DpnII GATC 3 cut(s) 48, 200, 460
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 2 cut(s) 344, 478
Eco81I CCTNAGG 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 386
FaiI YATR 8 cut(s) 34, 63, 177, 189, 269, 380, 440, 459
FaqI GGGAC 2 cut(s) 50, 491
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 282, 364
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 282, 364
FspBI CTAG 1 cut(s) 71
FspI TGCGCA 2 cut(s) 180, 214
GlaI GCGC 2 cut(s) 180, 214
GluI GCNGC 2 cut(s) 282, 364
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 419
HapII CCGG 2 cut(s) 273, 342
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 181, 215
Hin6I GCGC 2 cut(s) 179, 213
HinP1I GCGC 2 cut(s) 179, 213
HinfI GANTC 1 cut(s) 121
HpaII CCGG 2 cut(s) 273, 342
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 208, 300
Hpy188I TCNGA 2 cut(s) 229, 244
Hpy188III TCNNGA 2 cut(s) 347, 468
Hpy8I GTNNAC 2 cut(s) 208, 300
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 4 cut(s) 82, 95, 137, 359
HpyCH4V TGCA 5 cut(s) 151, 300, 413, 426, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 432
HpyF3I CTNAG 4 cut(s) 166, 171, 243, 348
HspAI GCGC 2 cut(s) 179, 213
Kzo9I GATC 3 cut(s) 48, 200, 460
LmnI GCTCC 3 cut(s) 41, 220, 238
LpnPI CCDG 8 cut(s) 280, 286, 355, 360, 373, 400, 453, 463
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 50, 202, 462
MboI GATC 3 cut(s) 48, 200, 460
MboII GAAGA 2 cut(s) 98, 365
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 135, 302
MluCI AATT 2 cut(s) 54, 184
MnlI CCTC 3 cut(s) 78, 113, 343
MseI TTAA 1 cut(s) 23
MslI CAYNNNNRTG 2 cut(s) 151, 228
MspI CCGG 2 cut(s) 273, 342
MspR9I CCNGG 1 cut(s) 388
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 388
MwoI GCNNNNNNNGC 2 cut(s) 176, 432
NdeII GATC 3 cut(s) 48, 200, 460
NlaIV GGNNCC 1 cut(s) 479
NsbI TGCGCA 2 cut(s) 180, 214
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 121
PinAI ACCGGT 2 cut(s) 272, 341
PkrI GCNGC 2 cut(s) 283, 365
PshAI GACNNNNGTC 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 479
PspPI GGNCC 3 cut(s) 344, 417, 478
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 3 cut(s) 79, 293, 340
RsaNI GTAC 3 cut(s) 78, 292, 339
RseI CAYNNNNRTG 2 cut(s) 151, 228
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 282, 364
Sau3AI GATC 3 cut(s) 48, 200, 460
Sau96I GGNCC 3 cut(s) 344, 417, 478
ScaI AGTACT 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 388
SduI GDGCHC 2 cut(s) 135, 302
SetI ASST 3 cut(s) 46, 167, 172
SfaNI GCATC 1 cut(s) 220
SinI GGWCC 2 cut(s) 344, 478
SmiMI CAYNNNNRTG 2 cut(s) 151, 228
Sse9I AATT 2 cut(s) 54, 184
SsiI CCGC 2 cut(s) 143, 364
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 386
TaaI ACNGT 4 cut(s) 82, 95, 137, 359
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 54, 184
TatI WGTACW 2 cut(s) 77, 291
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 2 cut(s) 100, 153
TseI GCWGC 1 cut(s) 281
TspRI CASTG 2 cut(s) 100, 153
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 344, 478
XspI CTAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.