FvH4_2g12260

Protein SENSITIVE TO PROTON RHIZOTOXICITY

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
10749741 .. 10752169
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12260.t2

Sequence Viewer

Length: 1572 bp
ATGGATCATAAAGATAAGGTTTGTGCAGACACCTGGGCAAAGGATTTAAGAAATAAGACTTGCTCAGATCGGCCAAAGTTTGCCAATTTCAGTGCACACCAGCATCAAAACAAGTGGGAAGATCCCTCCATTTTAGATTATGGCATTAGGATTGAACCATCCTTCCAGAAACTCAGCCAGCCATCTGAGGATCAAACTTCACTTCCTCACAACTCCAACAATGAGAAAACAATTGCAGATGGGGAAGATGTTCAGATGAATGAGATATTTCACGCCAGTAAGATTCAAGATTGGGATCCGAGTACAATGTTGACCAATCTATCCTTCCTGGAACAAAAGATCCATCAGCTCCAAGATTTAGTGCATTTGATTGTTGGCCGGAGAGGACAAGTTCTAGGACGACCTGATGAGCTGGTGGCTCAACAACAGCAGCTCATTACTGCTGATCTTACTTCAATCATAGCTCAATTGATCTCTACGGCAGGTAGTCTTCTTCCATCCGTCAAGCATACCCTTTCCAGCGCCTCAGCATCTGCGGTACAGTTCGGGCAGCTTGGTGGTTCATTTGTTTCTTCTGGAGCAGGAACTGAAGCTTCTGTTAAGTTGCAAATGAATTGCGGAAGCAAGTTACCTGAGCAGCCCAACCAAACTGACCCGATCAGTAACTATGGGACTGAGCTAAACTACCACATTGAAGAACATGAATCAAAAGATGAAGAGGATGCTGATGAAGGCGAGAACCTTCCACCTGGTACTTACGAAATCTTACAGCTAGAGAAAGAAGAAATCCTTGCACCACATACTCATTTCTGTGCTATATGCGGAAAGGGATTCAAGAGGGATGCAAACTTAAGGATGCACATGAGAGGTCATGGAGACGAGTACAAAACCCCAGCTGCACTTGCAAAGCCCAACAAAGATTCTAGTTCTGAACCAACACTCATCAAAAGGTATTCATGCCCTTATGCTGGTTGCAAGCGGAACAAGGATCACAAGAAGTTTCAGCCTTTGAAGACCATTTTATGTGTCAAAAATCACTACAAGAGAACCCATTGTGACAAAAGTTACACTTGCAGCAGATGCAACACCAAGAAGTTCTCCGTTATTGCAGATCTCAAGACTCATGAGAAGCACTGTGGTAAGGACAAGTGGCTTTGTTCTTGTGGCACAACCTTCTCCAGGAAAGACAAGCTTTTTGGCCATATTGCCCTGTTCCAAGGTCACACTCCTGCCATTCCCCTCGATGAAACAAAAACTGCTGTTGGGGCATCTGAACATGGGGAAGGTAGTGAAGCACCAAACAGAGTTGGTAGCATCAATTTCAATTTTGGTTCCACTCTTCCAAGTGCCGGTGGTTTGGTTCAGAATATTATGGATGTGAAAGAAAGTGTCGACGATCCTACTTGTTATTTCTCGCCGTTGAATTTTGACACATGTAATTTTGATGGATTTCATGAGTTCCCTCGACCCCCATTTGAAGATTCAGAGAGTTCATTCTCTTTTCTCATGCCAGGGTCCTGTAATTACACTCACAAAACTGGAGGCGAGTCAAATTCCAAACAGGTCGAGTGA

Protein Analysis

524

Amino Acids

58.14

Weight (kDa)

6.06

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_STOP2_3rd PF23115 318 - 352 2.6e-19 STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C PF23118 383 - 412 9.8e-23 STOP2-like, C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011312)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 473
AccI GTMKAC 1 cut(s) 1392
AciI CCGC 4 cut(s) 536, 618, 822, 979
AclWI GGATC 8 cut(s) 12, 116, 198, 290, 303, 334, 996, 1391
AcoI YGGCCR 3 cut(s) 71, 376, 1198
AcsI RAATTY 2 cut(s) 1423, 1552
AcuI CTGAAG 1 cut(s) 609
AfaI GTAC 4 cut(s) 304, 540, 754, 884
AfiI CCNNNNNNNGG 3 cut(s) 968, 1179, 1349
AflII CTTAAG 1 cut(s) 850
AflIII ACRYGT 1 cut(s) 1433
AgsI TTSAA 9 cut(s) 155, 287, 456, 695, 835, 1012, 1324, 1423, 1478
AjnI CCWGG 5 cut(s) 32, 327, 748, 1178, 1510
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AloI GAACNNNNNNTCC 4 cut(s) 147, 179, 324, 356
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 870
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 8 cut(s) 12, 116, 198, 290, 303, 334, 996, 1391
AlwNI CAGNNNCTG 2 cut(s) 533, 587
AoxI GGCC 3 cut(s) 71, 376, 1198
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 5 cut(s) 430, 550, 637, 896, 1074
ApoI RAATTY 2 cut(s) 1423, 1552
ArsI GACNNNNNNTTYG 2 cut(s) 1178, 1210
Asp700I GAANNNNTTC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 1515
AvaII GGWCC 1 cut(s) 1515
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 1200
BamHI GGATCC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 482, 1019
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 526
BbvI GCAGC 5 cut(s) 442, 562, 649, 883, 1086
BccI CCATC 6 cut(s) 166, 190, 233, 351, 505, 1439
BceAI ACGGC 2 cut(s) 495, 1402
BciT130I CCWGG 5 cut(s) 34, 329, 750, 1180, 1512
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 3 cut(s) 395, 773, 924
BfoI RGCGCY 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 850
BfuAI ACCTGC 1 cut(s) 473
BglII AGATCT 1 cut(s) 1111
BisI GCNGC 5 cut(s) 431, 551, 638, 897, 1075
BlsI GCNGC 5 cut(s) 432, 552, 639, 898, 1076
Bme1390I CCNGG 5 cut(s) 34, 329, 750, 1180, 1512
Bme18I GGWCC 1 cut(s) 1515
BmgT120I GGNCC 1 cut(s) 1515
BmiI GGNNCC 3 cut(s) 297, 1333, 1516
BmrFI CCNGG 5 cut(s) 34, 329, 750, 1180, 1512
BmsI GCATC 8 cut(s) 112, 539, 712, 832, 846, 1070, 1277, 1323
BpiI GAAGAC 2 cut(s) 482, 1019
BpmI CTGGAG 3 cut(s) 597, 1162, 1560
Bpu10I CCTNAGC 2 cut(s) 526, 633
BpuEI CTTGAG 1 cut(s) 1100
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 33, 1216, 1511
Bsc4I CCNNNNNNNGG 3 cut(s) 968, 1179, 1349
Bse118I RCCGGY 1 cut(s) 1349
Bse1I ACTGG 2 cut(s) 276, 1543
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 5 cut(s) 34, 329, 750, 1180, 1512
BseDI CCNNGG 3 cut(s) 33, 1216, 1511
BseGI GGATG 6 cut(s) 158, 497, 727, 847, 861, 1381
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 3 cut(s) 968, 1179, 1349
BseMII CTCAG 6 cut(s) 78, 177, 187, 540, 624, 666
BseNI ACTGG 2 cut(s) 276, 1543
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 5 cut(s) 442, 562, 649, 883, 1086
BseYI CCCAGC 1 cut(s) 892
BsgI GTGCAG 2 cut(s) 45, 882
BshFI GGCC 3 cut(s) 73, 378, 1200
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 379, 1350
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 968, 1179, 1349
BsmAI GTCTC 1 cut(s) 870
BsmBI CGTCTC 1 cut(s) 870
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 3 cut(s) 73, 378, 1200
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 4 cut(s) 536, 618, 822, 979
BspANI GGCC 3 cut(s) 73, 378, 1200
BspCNI CTCAG 6 cut(s) 77, 178, 186, 539, 625, 667
BspHI TCATGA 2 cut(s) 1123, 1453
BspLI GGNNCC 3 cut(s) 297, 1333, 1516
BspMI ACCTGC 1 cut(s) 473
BspPI GGATC 8 cut(s) 12, 116, 198, 290, 303, 334, 996, 1391
BspTI CTTAAG 1 cut(s) 850
BsrFI RCCGGY 1 cut(s) 1349
BsrI ACTGG 2 cut(s) 276, 1543
BssAI RCCGGY 1 cut(s) 1349
BssECI CCNNGG 3 cut(s) 33, 1216, 1511
BssT1I CCWWGG 1 cut(s) 1216
Bst2UI CCWGG 5 cut(s) 34, 329, 750, 1180, 1512
Bst4CI ACNGT 2 cut(s) 543, 1136
Bst6I CTCTTC 2 cut(s) 711, 1344
BstAFI CTTAAG 1 cut(s) 850
BstAPI GCANNNNNTGC 1 cut(s) 1080
BstC8I GCNNGC 2 cut(s) 179, 977
BstDEI CTNAG 6 cut(s) 64, 173, 186, 526, 633, 675
BstENI CCTNNNNNAGG 1 cut(s) 1177
BstF5I GGATG 6 cut(s) 158, 497, 727, 847, 861, 1381
BstH2I RGCGCY 1 cut(s) 525
BstHHI GCGC 1 cut(s) 524
BstMAI GTCTC 1 cut(s) 870
BstMWI GCNNNNNNNGC 3 cut(s) 902, 1080, 1265
BstNI CCWGG 5 cut(s) 34, 329, 750, 1180, 1512
BstNSI RCATGY 1 cut(s) 1437
BstSCI CCNGG 5 cut(s) 32, 327, 748, 1178, 1510
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 5 cut(s) 442, 562, 649, 883, 1086
BstV2I GAAGAC 2 cut(s) 482, 1019
BstX2I RGATCY 4 cut(s) 121, 295, 339, 1111
BstYI RGATCY 4 cut(s) 121, 295, 339, 1111
BsuRI GGCC 3 cut(s) 73, 378, 1200
BtsCI GGATG 6 cut(s) 158, 497, 727, 847, 861, 1381
BtsIMutI CAGTG 2 cut(s) 97, 1132
BveI ACCTGC 1 cut(s) 473
Cac8I GCNNGC 2 cut(s) 179, 977
CaiI CAGNNNCTG 2 cut(s) 533, 587
CciI TCATGA 2 cut(s) 1123, 1453
CfoI GCGC 1 cut(s) 524
Cfr10I RCCGGY 1 cut(s) 1349
Cfr13I GGNCC 1 cut(s) 1515
CsiI ACCWGGT 1 cut(s) 748
Csp6I GTAC 4 cut(s) 303, 539, 753, 883
CspCI CAANNNNNGTGG 2 cut(s) 95, 130
CviAII CATG 9 cut(s) 701, 862, 872, 957, 1124, 1277, 1434, 1454, 1507
CviQI GTAC 4 cut(s) 303, 539, 753, 883
DdeI CTNAG 6 cut(s) 64, 173, 186, 526, 633, 675
EaeI YGGCCR 3 cut(s) 71, 376, 1198
Eam1104I CTCTTC 2 cut(s) 711, 1344
EarI CTCTTC 2 cut(s) 711, 1344
Eco130I CCWWGG 1 cut(s) 1216
Eco47I GGWCC 1 cut(s) 1515
Eco57I CTGAAG 1 cut(s) 609
EcoNI CCTNNNNNAGG 1 cut(s) 1177
EcoO109I RGGNCCY 1 cut(s) 1515
EcoRII CCWGG 5 cut(s) 32, 327, 748, 1178, 1510
EcoT14I CCWWGG 1 cut(s) 1216
ErhI CCWWGG 1 cut(s) 1216
Esp3I CGTCTC 1 cut(s) 870
FaeI CATG 9 cut(s) 704, 865, 875, 960, 1127, 1280, 1437, 1457, 1510
FalI AAGNNNNNCTT 6 cut(s) 774, 806, 1054, 1086, 1176, 1208
FaqI GGGAC 1 cut(s) 685
FatI CATG 9 cut(s) 700, 861, 871, 956, 1123, 1276, 1433, 1453, 1506
FblI GTMKAC 1 cut(s) 1392
Fnu4HI GCNGC 5 cut(s) 431, 551, 638, 897, 1075
FokI GGATG 6 cut(s) 145, 484, 734, 854, 868, 1388
Fsp4HI GCNGC 5 cut(s) 431, 551, 638, 897, 1075
FspBI CTAG 3 cut(s) 395, 773, 924
GlaI GCGC 1 cut(s) 523
GluI GCNGC 5 cut(s) 431, 551, 638, 897, 1075
GsaI CCCAGC 1 cut(s) 896
GsuI CTGGAG 3 cut(s) 597, 1162, 1560
HaeII RGCGCY 1 cut(s) 525
HaeIII GGCC 3 cut(s) 73, 378, 1200
HapII CCGG 2 cut(s) 379, 1350
HhaI GCGC 1 cut(s) 524
Hin1II CATG 9 cut(s) 704, 865, 875, 960, 1127, 1280, 1437, 1457, 1510
Hin6I GCGC 1 cut(s) 522
HinP1I GCGC 1 cut(s) 522
HincII GTYRAC 2 cut(s) 312, 1393
HindII GTYRAC 2 cut(s) 312, 1393
HindIII AAGCTT 2 cut(s) 591, 1190
HinfI GANTC 7 cut(s) 283, 704, 831, 920, 1120, 1481, 1547
HpaII CCGG 2 cut(s) 379, 1350
Hpy166II GTNNAC 3 cut(s) 95, 312, 1393
Hpy188I TCNGA 8 cut(s) 67, 187, 255, 300, 931, 1273, 1365, 1486
Hpy188III TCNNGA 7 cut(s) 166, 287, 576, 835, 1117, 1124, 1454
Hpy8I GTNNAC 3 cut(s) 95, 312, 1393
Hpy99I CGWCG 1 cut(s) 1397
HpyAV CCTTC 6 cut(s) 172, 334, 725, 752, 1183, 1277
HpyCH4III ACNGT 2 cut(s) 543, 1136
HpyF10VI GCNNNNNNNGC 3 cut(s) 902, 1080, 1265
HpyF3I CTNAG 6 cut(s) 64, 173, 186, 526, 633, 675
Hsp92II CATG 9 cut(s) 704, 865, 875, 960, 1127, 1280, 1437, 1457, 1510
HspAI GCGC 1 cut(s) 522
LmnI GCTCC 2 cut(s) 354, 578
Lsp1109I GCAGC 5 cut(s) 442, 562, 649, 883, 1086
LweI GCATC 8 cut(s) 112, 539, 712, 832, 846, 1070, 1277, 1323
MabI ACCWGGT 1 cut(s) 748
MaeI CTAG 3 cut(s) 395, 773, 924
MaeIII GTNAC 5 cut(s) 627, 662, 1055, 1064, 1220
MfeI CAATTG 2 cut(s) 231, 467
MflI RGATCY 4 cut(s) 121, 295, 339, 1111
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 1200
MluNI TGGCCA 1 cut(s) 1200
MlyI GAGTC 2 cut(s) 1114, 1556
MmeI TCCRAC 1 cut(s) 240
Mox20I TGGCCA 1 cut(s) 1200
MroXI GAANNNNTTC 1 cut(s) 249
MscI TGGCCA 1 cut(s) 1200
MseI TTAA 3 cut(s) 47, 600, 851
MslI CAYNNNNRTG 1 cut(s) 810
Msp20I TGGCCA 1 cut(s) 1200
MspA1I CMGCKG 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 850
MspI CCGG 2 cut(s) 379, 1350
MspR9I CCNGG 5 cut(s) 34, 329, 750, 1180, 1512
MunI CAATTG 2 cut(s) 231, 467
MvaI CCWGG 5 cut(s) 34, 329, 750, 1180, 1512
MwoI GCNNNNNNNGC 3 cut(s) 902, 1080, 1265
NlaIII CATG 9 cut(s) 704, 865, 875, 960, 1127, 1280, 1437, 1457, 1510
NlaIV GGNNCC 3 cut(s) 297, 1333, 1516
NmuCI GTSAC 2 cut(s) 1055, 1220
NspI RCATGY 1 cut(s) 1437
PagI TCATGA 2 cut(s) 1123, 1453
PciI ACATGT 1 cut(s) 1433
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 5 cut(s) 283, 704, 831, 920, 1481
PfoI TCCNGGA 2 cut(s) 327, 1178
PkrI GCNGC 5 cut(s) 432, 552, 639, 898, 1076
PleI GAGTC 2 cut(s) 1114, 1555
PpsI GAGTC 2 cut(s) 1114, 1555
PpuMI RGGWCCY 1 cut(s) 1515
PscI ACATGT 1 cut(s) 1433
Psp5II RGGWCCY 1 cut(s) 1515
Psp6I CCWGG 5 cut(s) 32, 327, 748, 1178, 1510
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 5 cut(s) 32, 327, 748, 1178, 1510
PspN4I GGNNCC 3 cut(s) 297, 1333, 1516
PspPI GGNCC 1 cut(s) 1515
PspPPI RGGWCCY 1 cut(s) 1515
PstNI CAGNNNCTG 2 cut(s) 533, 587
PsuI RGATCY 4 cut(s) 121, 295, 339, 1111
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 4 cut(s) 304, 540, 754, 884
RsaNI GTAC 4 cut(s) 303, 539, 753, 883
RseI CAYNNNNRTG 1 cut(s) 810
SalI GTCGAC 1 cut(s) 1391
SaqAI TTAA 3 cut(s) 47, 600, 851
SatI GCNGC 5 cut(s) 431, 551, 638, 897, 1075
Sau96I GGNCC 1 cut(s) 1515
SchI GAGTC 2 cut(s) 1114, 1556
ScrFI CCNGG 5 cut(s) 34, 329, 750, 1180, 1512
SduI GDGCHC 1 cut(s) 97
SexAI ACCWGGT 1 cut(s) 748
SfaNI GCATC 8 cut(s) 112, 539, 712, 832, 846, 1070, 1277, 1323
SinI GGWCC 1 cut(s) 1515
SmiMI CAYNNNNRTG 1 cut(s) 810
SmlI CTYRAG 2 cut(s) 850, 1115
SmoI CTYRAG 2 cut(s) 850, 1115
SsiI CCGC 4 cut(s) 536, 618, 822, 979
SspI AATATT 1 cut(s) 1369
SspMI CTAG 3 cut(s) 395, 773, 924
StyD4I CCNGG 5 cut(s) 32, 327, 748, 1178, 1510
StyI CCWWGG 1 cut(s) 1216
TaaI ACNGT 2 cut(s) 543, 1136
TaqI TCGA 4 cut(s) 1242, 1392, 1465, 1566
TatI WGTACW 2 cut(s) 302, 882
TfiI GAWTC 5 cut(s) 283, 704, 831, 920, 1481
Tru1I TTAA 3 cut(s) 47, 600, 851
Tru9I TTAA 3 cut(s) 47, 600, 851
TscAI CASTG 2 cut(s) 97, 1139
TseFI GTSAC 2 cut(s) 1055, 1220
TseI GCWGC 5 cut(s) 430, 550, 637, 896, 1074
Tsp45I GTSAC 2 cut(s) 1055, 1220
TspGWI ACGGA 2 cut(s) 490, 1090
TspRI CASTG 2 cut(s) 97, 1139
Vha464I CTTAAG 1 cut(s) 850
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 1515
XagI CCTNNNNNAGG 1 cut(s) 1177
XapI RAATTY 2 cut(s) 1423, 1552
XceI RCATGY 1 cut(s) 1437
XmiI GTMKAC 1 cut(s) 1392
XmnI GAANNNNTTC 1 cut(s) 249
XspI CTAG 3 cut(s) 395, 773, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.