Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005748.1

Orthogroup ID

OG0011312

Physical Location & Seq

Genomic Coordinates Reverse (-)

54983 .. 56551

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005748.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

atggatcataaagataagatttgtgcagacccctgggcaaaggatttaagaaataagacttgctcggatcggccgccttttgccaatttcggttcacaccagcatcaaaacaagtgggaagatccctctattttagattatggcatgaggattgaaccgtccttccagaaactcagccagccgtccgaggatcaaacttcacttccttgcaactccaacaatgagaaaacaattgcagatggagaggatgttcagatgaatgagatactccatgccagtaaaattcaagattgggatccaagaacaatgttgaccaatctttcgttcctggaacaaaagatccatcagctccaggatttagtgcatttgattgttggccggaggggccaagttcaaggacgaccagatgagctggtggctcaacaacagcagctcataactgctgatcttacttcaatcatagctcaattgatctctacggcaggtagtcttcttccatccgttaagcatacgctttccactgcaacatcttctgtgggacagtttgggcagcttggtggttcatttgtttcttctggagcaggaactgaagctccagttaagttgcaaattaatagcggaagcaagttatctgagcagcccaaccaaactgacctgatcactaactatgggactgagcaaagctacaacattgaagaacatgaatcaaaagatgaagaggatgctgatgatggcgagaaccttccgcctggtacttatgaaatcttacagctagagaaagaagaaatccttgcaccacacactcatttctgtgctatatgtggaaagggattcaagagggatgcaaacttaaggatgcacatgagaggtcatggagacgagtacaaaaccccagctgcacttgcaaagcccaacaaagaatctagttctgaaccaacactcatcaaaaggtattcatgcccttatgctggctgcaagcggaacaaggatcacaagaagtttcagcctttgaagaccattttatgtgtcaaaaatcactacaagagaacccactgtgacaaaagttacacttgcagcaggtgcaacaccaagaaattctccgttattgcagatctgaaaactcatgagaagcactgtggtaaggacaagtggctttgttcttgtggcacaaccttctccaggaaagacaagctttttggacatattgcgctgtttcaaggtcacactcctgccattcccctggacgaaacaaaaacaactgttgggccatctgaacatggggaaggtagtgaagcaccaaacagagttggtagcatcaacttcaattttggctccactgtgccaagtggcagtggtatagttcagaatattatggatgtgaaagaaagtgtcgacgatcctactagttatttctcgccgttgaattttgatacatgtaattttgatgggtttcatgagttccctcgacccccatttgaagattcagagagttcattctcttttcttatgccagggtcctgtaattacactcagaaaacaggtggcgagtcaaattccaaaaaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

522

Amino Acids

58.05

Weight (kDa)

6.1

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34370 AT1G34370 AT1G34370
fragaria_vesca	FvH4_2g12260 FvH4_2g12260
malus_domestica	MD05G1040600.v1.1 MD10G1046700.v1.1
prunus_persica	Prupe.8G055100_v2.0.a1 Prupe.8G055100_v2.0.a1
pyrus_communis	pycom05g03320
rosa_chinensis	RchiOBHm_Chr6g0272161
rosa_laevigata	RLG00000013695
rosa_multiflora	Rmu_sc0005748.1_g000013
rosa_roxburghii	Rroxscaffold_7G00196540
rosa_rugosa	Rorug06G0066600
rosa_samantha	Rh6AG183400 Rh6BG183700 Rh6CG184800 Rh6DG176500
rosa_wichuraiana	Rw6G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1068
Acc36I	ACCTGC	2 cut(s)	473, 1068
AccI	GTMKAC	1 cut(s)	1392
AciI	CCGC	4 cut(s)	74, 618, 746, 979
AclWI	GGATC	9 cut(s)	12, 75, 116, 198, 290, 303, 334, 996, 1391
AcoI	YGGCCR	2 cut(s)	71, 376
AcsI	RAATTY	5 cut(s)	282, 1094, 1423, 1552, 1563
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	2 cut(s)	754, 884
AfiI	CCNNNNNNNGG	2 cut(s)	968, 1179
AflII	CTTAAG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	1433
AhlI	ACTAGT	1 cut(s)	1403
AjnI	CCWGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AloI	GAACNNNNNNTCC	8 cut(s)	147, 179, 234, 266, 324, 356, 577, 609
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	9 cut(s)	12, 75, 116, 198, 290, 303, 334, 996, 1391
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	4 cut(s)	71, 376, 385, 1265
ApeKI	GCWGC	6 cut(s)	430, 550, 637, 896, 972, 1074
ApoI	RAATTY	5 cut(s)	282, 1094, 1423, 1552, 1563
ArsI	GACNNNNNNTTYG	4 cut(s)	304, 336, 1178, 1210
AseI	ATTAAT	1 cut(s)	612
AspLEI	GCGC	1 cut(s)	1210
AspS9I	GGNCC	3 cut(s)	385, 1265, 1515
AvaII	GGWCC	1 cut(s)	1515
BamHI	GGATCC	1 cut(s)	295
BbsI	GAAGAC	2 cut(s)	482, 1019
BbvI	GCAGC	6 cut(s)	442, 562, 649, 883, 959, 1086
BccI	CCATC	6 cut(s)	233, 351, 505, 725, 1276, 1439
BceAI	ACGGC	3 cut(s)	166, 495, 1402
BciT130I	CCWGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	870
BcuI	ACTAGT	1 cut(s)	1403
BfaI	CTAG	3 cut(s)	773, 924, 1404
BfrI	CTTAAG	1 cut(s)	850
BfuAI	ACCTGC	2 cut(s)	473, 1068
BglI	GCCNNNNNGGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	1111
BisI	GCNGC	7 cut(s)	74, 431, 551, 638, 897, 973, 1075
BlsI	GCNGC	7 cut(s)	75, 432, 552, 639, 898, 974, 1076
Bme1390I	CCNGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
Bme18I	GGWCC	1 cut(s)	1515
BmgT120I	GGNCC	3 cut(s)	385, 1265, 1515
BmiI	GGNNCC	4 cut(s)	297, 386, 1333, 1516
BmrFI	CCNGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
BmsI	GCATC	5 cut(s)	112, 712, 832, 846, 1323
BpiI	GAAGAC	2 cut(s)	482, 1019
BpmI	CTGGAG	4 cut(s)	335, 579, 597, 1162
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	5 cut(s)	32, 33, 186, 1239, 1511
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	968, 1179
Bse1I	ACTGG	2 cut(s)	276, 596
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
BseDI	CCNNGG	5 cut(s)	32, 33, 186, 1239, 1511
BseGI	GGATG	6 cut(s)	253, 497, 727, 847, 861, 1381
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	968, 1179
BseMII	CTCAG	4 cut(s)	187, 624, 666, 1544
BseNI	ACTGG	2 cut(s)	276, 596
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	6 cut(s)	442, 562, 649, 883, 959, 1086
BseYI	CCCAGC	1 cut(s)	892
BsgI	GTGCAG	2 cut(s)	45, 882
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	73, 378, 387, 1267
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	552, 685
BslI	CCNNNNNNNGG	2 cut(s)	968, 1179
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	2 cut(s)	552, 685
BsnI	GGCC	4 cut(s)	73, 378, 387, 1267
BspACI	CCGC	4 cut(s)	74, 618, 746, 979
BspANI	GGCC	4 cut(s)	73, 378, 387, 1267
BspCNI	CTCAG	4 cut(s)	186, 625, 667, 1543
BspHI	TCATGA	2 cut(s)	1123, 1453
BspLI	GGNNCC	4 cut(s)	297, 386, 1333, 1516
BspMI	ACCTGC	2 cut(s)	473, 1068
BspPI	GGATC	9 cut(s)	12, 75, 116, 198, 290, 303, 334, 996, 1391
BspTI	CTTAAG	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	276, 596
BssECI	CCNNGG	5 cut(s)	32, 33, 186, 1239, 1511
Bst2UI	CCWGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
Bst4CI	ACNGT	6 cut(s)	159, 543, 1055, 1136, 1261, 1339
Bst6I	CTCTTC	1 cut(s)	711
BstAFI	CTTAAG	1 cut(s)	850
BstAPI	GCANNNNNTGC	1 cut(s)	1080
BstC8I	GCNNGC	3 cut(s)	179, 970, 977
BstDEI	CTNAG	4 cut(s)	173, 633, 675, 1530
BstENI	CCTNNNNNAGG	1 cut(s)	1177
BstF5I	GGATG	6 cut(s)	253, 497, 727, 847, 861, 1381
BstHHI	GCGC	1 cut(s)	1210
BstMAI	GTCTC	1 cut(s)	870
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 902, 1080
BstNI	CCWGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
BstNSI	RCATGY	1 cut(s)	1437
BstSCI	CCNGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
BstV1I	GCAGC	6 cut(s)	442, 562, 649, 883, 959, 1086
BstV2I	GAAGAC	2 cut(s)	482, 1019
BstX2I	RGATCY	4 cut(s)	121, 295, 339, 1111
BstXI	CCANNNNNNTGG	1 cut(s)	1240
BstYI	RGATCY	4 cut(s)	121, 295, 339, 1111
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	73, 378, 387, 1267
BtsCI	GGATG	6 cut(s)	253, 497, 727, 847, 861, 1381
BtsI	GCAGTG	2 cut(s)	519, 1357
BtsIMutI	CAGTG	5 cut(s)	519, 1051, 1132, 1335, 1357
BveI	ACCTGC	2 cut(s)	473, 1068
Cac8I	GCNNGC	3 cut(s)	179, 970, 977
CaiI	CAGNNNCTG	1 cut(s)	587
CciI	TCATGA	2 cut(s)	1123, 1453
CfoI	GCGC	1 cut(s)	1210
Cfr13I	GGNCC	3 cut(s)	385, 1265, 1515
Csp6I	GTAC	2 cut(s)	753, 883
CspCI	CAANNNNNGTGG	2 cut(s)	95, 130
CviQI	GTAC	2 cut(s)	753, 883
DdeI	CTNAG	4 cut(s)	173, 633, 675, 1530
EaeI	YGGCCR	2 cut(s)	71, 376
EagI	CGGCCG	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	735
EclXI	CGGCCG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	1515
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	609
EcoNI	CCTNNNNNAGG	1 cut(s)	1177
EcoO109I	RGGNCCY	1 cut(s)	1515
EcoRII	CCWGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
Esp3I	CGTCTC	1 cut(s)	870
FalI	AAGNNNNNCTT	6 cut(s)	774, 806, 1054, 1086, 1176, 1208
FaqI	GGGAC	2 cut(s)	552, 685
FbaI	TGATCA	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	1392
Fnu4HI	GCNGC	7 cut(s)	74, 431, 551, 638, 897, 973, 1075
FokI	GGATG	6 cut(s)	260, 484, 734, 854, 868, 1388
Fsp4HI	GCNGC	7 cut(s)	74, 431, 551, 638, 897, 973, 1075
FspBI	CTAG	3 cut(s)	773, 924, 1404
GlaI	GCGC	1 cut(s)	1209
GluI	GCNGC	7 cut(s)	74, 431, 551, 638, 897, 973, 1075
GsaI	CCCAGC	1 cut(s)	896
GsuI	CTGGAG	4 cut(s)	335, 579, 597, 1162
HaeIII	GGCC	4 cut(s)	73, 378, 387, 1267
HapII	CCGG	1 cut(s)	379
HhaI	GCGC	1 cut(s)	1210
Hin6I	GCGC	1 cut(s)	1208
HinP1I	GCGC	1 cut(s)	1208
HincII	GTYRAC	2 cut(s)	312, 1393
HindII	GTYRAC	2 cut(s)	312, 1393
HindIII	AAGCTT	1 cut(s)	1190
HinfI	GANTC	5 cut(s)	704, 831, 920, 1481, 1547
HpaII	CCGG	1 cut(s)	379
Hpy166II	GTNNAC	3 cut(s)	95, 312, 1393
Hpy188III	TCNNGA	6 cut(s)	166, 287, 576, 835, 1124, 1454
Hpy8I	GTNNAC	3 cut(s)	95, 312, 1393
Hpy99I	CGWCG	1 cut(s)	1397
HpyAV	CCTTC	4 cut(s)	172, 752, 1183, 1277
HpyCH4III	ACNGT	6 cut(s)	159, 543, 1055, 1136, 1261, 1339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 902, 1080
HpyF3I	CTNAG	4 cut(s)	173, 633, 675, 1530
HspAI	GCGC	1 cut(s)	1208
Ksp22I	TGATCA	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	354, 578, 598, 1337
Lsp1109I	GCAGC	6 cut(s)	442, 562, 649, 883, 959, 1086
LweI	GCATC	5 cut(s)	112, 712, 832, 846, 1323
MaeI	CTAG	3 cut(s)	773, 924, 1404
MaeIII	GTNAC	3 cut(s)	1055, 1064, 1220
MfeI	CAATTG	2 cut(s)	231, 467
MflI	RGATCY	4 cut(s)	121, 295, 339, 1111
MlyI	GAGTC	1 cut(s)	1556
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	136, 141, 181, 238, 375, 712, 831, 860, 1473
MseI	TTAA	5 cut(s)	47, 504, 600, 612, 851
MslI	CAYNNNNRTG	1 cut(s)	810
MspA1I	CMGCKG	1 cut(s)	896
MspCI	CTTAAG	1 cut(s)	850
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
MunI	CAATTG	2 cut(s)	231, 467
MvaI	CCWGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
MwoI	GCNNNNNNNGC	3 cut(s)	384, 902, 1080
NlaIV	GGNNCC	4 cut(s)	297, 386, 1333, 1516
NmuCI	GTSAC	2 cut(s)	1055, 1220
NspI	RCATGY	1 cut(s)	1437
PagI	TCATGA	2 cut(s)	1123, 1453
PaqCI	CACCTGC	1 cut(s)	1068
PasI	CCCWGGG	1 cut(s)	33
PciI	ACATGT	1 cut(s)	1433
PfeI	GAWTC	4 cut(s)	704, 831, 920, 1481
PfoI	TCCNGGA	3 cut(s)	327, 351, 1178
PkrI	GCNGC	7 cut(s)	75, 432, 552, 639, 898, 974, 1076
PleI	GAGTC	1 cut(s)	1555
PpsI	GAGTC	1 cut(s)	1555
PpuMI	RGGWCCY	1 cut(s)	1515
PscI	ACATGT	1 cut(s)	1433
PshBI	ATTAAT	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	1515
Psp6I	CCWGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
PspN4I	GGNNCC	4 cut(s)	297, 386, 1333, 1516
PspPI	GGNCC	3 cut(s)	385, 1265, 1515
PspPPI	RGGWCCY	1 cut(s)	1515
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	4 cut(s)	121, 295, 339, 1111
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	2 cut(s)	754, 884
RsaNI	GTAC	2 cut(s)	753, 883
RseI	CAYNNNNRTG	1 cut(s)	810
SalI	GTCGAC	1 cut(s)	1391
SaqAI	TTAA	5 cut(s)	47, 504, 600, 612, 851
SatI	GCNGC	7 cut(s)	74, 431, 551, 638, 897, 973, 1075
Sau96I	GGNCC	3 cut(s)	385, 1265, 1515
SchI	GAGTC	1 cut(s)	1556
ScrFI	CCNGG	7 cut(s)	34, 329, 353, 750, 1180, 1241, 1512
SfaNI	GCATC	5 cut(s)	112, 712, 832, 846, 1323
SfiI	GGCCNNNNNGGCC	1 cut(s)	384
SinI	GGWCC	1 cut(s)	1515
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	850
SmoI	CTYRAG	1 cut(s)	850
SpeI	ACTAGT	1 cut(s)	1403
SsiI	CCGC	4 cut(s)	74, 618, 746, 979
SspI	AATATT	1 cut(s)	1369
SspMI	CTAG	3 cut(s)	773, 924, 1404
StyD4I	CCNGG	7 cut(s)	32, 327, 351, 748, 1178, 1239, 1510
TaaI	ACNGT	6 cut(s)	159, 543, 1055, 1136, 1261, 1339
TaqI	TCGA	2 cut(s)	1392, 1465
TatI	WGTACW	1 cut(s)	882
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	4 cut(s)	704, 831, 920, 1481
Tru1I	TTAA	5 cut(s)	47, 504, 600, 612, 851
Tru9I	TTAA	5 cut(s)	47, 504, 600, 612, 851
TscAI	CASTG	5 cut(s)	526, 1058, 1139, 1342, 1357
TseFI	GTSAC	2 cut(s)	1055, 1220
TseI	GCWGC	6 cut(s)	430, 550, 637, 896, 972, 1074
Tsp45I	GTSAC	2 cut(s)	1055, 1220
TspDTI	ATGAA	8 cut(s)	272, 552, 717, 729, 774, 945, 1442, 1482
TspGWI	ACGGA	2 cut(s)	490, 1090
TspRI	CASTG	5 cut(s)	526, 1058, 1139, 1342, 1357
Vha464I	CTTAAG	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	1515
VspI	ATTAAT	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	1177
XapI	RAATTY	5 cut(s)	282, 1094, 1423, 1552, 1563
XceI	RCATGY	1 cut(s)	1437
XmiI	GTMKAC	1 cut(s)	1392
XspI	CTAG	3 cut(s)	773, 924, 1404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.