Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011312

Physical Location & Seq

Genomic Coordinates Reverse (-)

3833383 .. 3834966

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGGATCCTAAAGAAAGGCAATGGGACACCTGGGAGAATCCTTCCACTGGGAATGATGTGACAAATACGATTTCCTCAGATCATCCATCTTTTAGCAATTTCAAATCGCGGCTGCATCAACGCGAGTGGGAAAGTCCCTCTGTTTTAGATTATGAAATAAGGATGGAACCGTCCTTCCAGAAGTTCCACCAGCCTTCTGATTTGCAAACGTCACATACTTGCAACTCCAAGAATGATACAAAAATTCCAGATCGAGAAGGTGGTAAGATGCATGAGGTGCAGCAGCCTAATAAAATCCAAGACTGGGATGCAAGAACGACGTTGAGCAATCTCACATTCCTGGAACAAAAGATCCATCAGCTTCAGGATTTAGTGCATGTGATTGTTGGCCGGAGAGGTCAAGTTCTAGGACGACCAGATGAACTTGTGGCTCAGCAACAGCAGCTCATAACTGCGGATCTTACTTCAATAATTGCTCAGTTGATCTCTACAGCAGGTAGTCTTCTACCATCTGTGAAGCATACGCTTTCCACCACATTACCTTCTACTGGACAGTTGGGGCAGCTTGGTGGGTCATTTATTCCTTCTGCAGCAGGAAATGATGCGGGTGTTAAGATGCAAATTAATAGCGCAAGAAAATTAGCTGATCAGGCCAACCAGACTGATCTAATAAGTAATTATGGGACTGAGCATGTTGAAGAACATGAAACCAAAGATGAGGAGGATGCTGATGAAGGTGAGAACCTTCCGCCTGGTAGCTATGAAATTTTACAGTTAGAGAAAGAAGAAATCCTTGCACCTCACACTCACTTCTGTGCAATTTGCGGAAAGGGATTCAAGCGGGATGCAAATTTAAGGATGCACATGAGAGGTCATGGAGACGAGTACAAAACCGCAGCAGCACTTGCTAAACCCAACAAAGAATCCAGCTCTGAACCAACGCTTATCAAAAGGTATTCATGCCCTTATGCCGGCTGCAAGCGGAACAAGGATCACAAAAAGTTTCAGCCTTTGAAGACTATTTTGTGTATCAAGAATCACTACAAGAGAACCCACTGTGACAAAAGTTACACTTGCAGCAGATGCAATATCAAGAAGTTCTCCGTTATTGCAGATCTGAAAACTCATGAGAAGCATTGTGGTACGGACAAGTGGCTTTGTTCTTGTGGCACTACCTTCTCGAGGAAAGACAAGCTTTTTGGGCACATTACCCTTTTTCAAGGCCACACTCCTGCCATACCCCTCGATGAAACAAAAGGACCTCTAGGGCCAGCAGACCATGGGGAAGGCAGTGAAGCGTCAAACAGAGTTGGAAGCATAAACTTCAGTGTTAGCTCCACTGCTCCTGGCGGAGGTGGTGCAGCTCAAAATCTCATGGACGTGAAAGAAAGTATTGATGATCCGACCAGTTACTTCTCTCCATTGAATTTTGAAACCTGTAATTTTGATGGGTTTCAAGAGTTCCCTCGACTCCCGTTTGAGGATTCAGAGAGTTCATTCTCGTTTCTCATGCCAGGGTCATGTAATTACACTCACAAAACTGGAGGAGGTGAGTCGAATTTCAACAATCTTCCTCGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043620 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

528

Amino Acids

58.66

Weight (kDa)

6.15

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	319 - 353	8.5e-19	STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C	PF23118	384 - 413	7.8e-22	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34370 AT1G34370 AT1G34370
fragaria_vesca	FvH4_2g12260 FvH4_2g12260
malus_domestica	MD05G1040600.v1.1 MD10G1046700.v1.1
prunus_persica	Prupe.8G055100_v2.0.a1 Prupe.8G055100_v2.0.a1
pyrus_communis	pycom05g03320
rosa_chinensis	RchiOBHm_Chr6g0272161
rosa_laevigata	RLG00000013695
rosa_multiflora	Rmu_sc0005748.1_g000013
rosa_roxburghii	Rroxscaffold_7G00196540
rosa_rugosa	Rorug06G0066600
rosa_samantha	Rh6AG183400 Rh6BG183700 Rh6CG184800 Rh6DG176500
rosa_wichuraiana	Rw6G015810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccII	CGCG	2 cut(s)	109, 123
AciI	CCGC	9 cut(s)	109, 455, 605, 749, 825, 841, 894, 982, 1350
AclWI	GGATC	5 cut(s)	12, 346, 465, 999, 1394
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	5 cut(s)	243, 765, 850, 1426, 1558
AcuI	CTGAAG	2 cut(s)	347, 1309
AfaI	GTAC	2 cut(s)	887, 1144
AfiI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
AjiI	CACGTC	1 cut(s)	1381
AjnI	CCWGG	5 cut(s)	29, 339, 751, 1345, 1513
AleI	CACNNNNGTG	1 cut(s)	813
AloI	GAACNNNNNNTCC	4 cut(s)	159, 191, 336, 368
AluBI	AGCT	9 cut(s)	361, 445, 565, 644, 759, 930, 1195, 1335, 1364
AluI	AGCT	9 cut(s)	361, 445, 565, 644, 759, 930, 1195, 1335, 1364
Alw26I	GTCTC	1 cut(s)	873
AlwI	GGATC	5 cut(s)	12, 346, 465, 999, 1394
Ama87I	CYCGRG	1 cut(s)	1180
AoxI	GGCC	4 cut(s)	388, 651, 1222, 1268
ApoI	RAATTY	5 cut(s)	243, 765, 850, 1426, 1558
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
AseI	ATTAAT	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	632
AspS9I	GGNCC	2 cut(s)	1259, 1268
AsuHPI	GGTGA	2 cut(s)	749, 1562
AvaI	CYCGRG	1 cut(s)	1180
AvaII	GGWCC	1 cut(s)	1259
BaeGI	GKGCMC	1 cut(s)	1206
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	494, 1022
BccI	CCATC	5 cut(s)	94, 157, 363, 517, 1442
BciT130I	CCWGG	5 cut(s)	31, 341, 753, 1347, 1515
BclI	TGATCA	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	873
BfaI	CTAG	2 cut(s)	407, 1265
BfmI	CTRYAG	2 cut(s)	489, 588
BfuAI	ACCTGC	1 cut(s)	485
BglII	AGATCT	1 cut(s)	1114
BlpI	GCTNAGC	1 cut(s)	432
Bme1390I	CCNGG	5 cut(s)	31, 341, 753, 1347, 1515
Bme18I	GGWCC	1 cut(s)	1259
BmeT110I	CYCGRG	1 cut(s)	1180
BmgBI	CACGTC	1 cut(s)	1381
BmgT120I	GGNCC	2 cut(s)	1259, 1268
BmiI	GGNNCC	2 cut(s)	6, 168
BmrFI	CCNGG	5 cut(s)	31, 341, 753, 1347, 1515
BmrI	ACTGGG	2 cut(s)	57, 313
BmsI	GCATC	9 cut(s)	124, 258, 298, 592, 606, 715, 835, 849, 1073
BmuI	ACTGGG	2 cut(s)	57, 313
BpiI	GAAGAC	2 cut(s)	494, 1022
BpmI	CTGGAG	1 cut(s)	1563
Bpu1102I	GCTNAGC	1 cut(s)	432
BsaJI	CCNNGG	3 cut(s)	30, 1279, 1514
Bsc4I	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
Bse118I	RCCGGY	1 cut(s)	971
Bse1I	ACTGG	5 cut(s)	52, 308, 553, 1407, 1546
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	5 cut(s)	31, 341, 753, 1347, 1515
BseDI	CCNNGG	3 cut(s)	30, 1279, 1514
BseGI	GGATG	6 cut(s)	82, 168, 313, 730, 850, 864
BseLI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	4 cut(s)	90, 446, 491, 678
BseNI	ACTGG	5 cut(s)	52, 308, 553, 1407, 1546
BseRI	GAGGAG	2 cut(s)	734, 1560
BseSI	GKGCMC	1 cut(s)	1206
BsgI	GTGCAG	2 cut(s)	299, 1380
Bsh1236I	CGCG	2 cut(s)	109, 123
BshFI	GGCC	4 cut(s)	390, 653, 1224, 1270
BsiHKCI	CYCGRG	1 cut(s)	1180
BsiSI	CCGG	2 cut(s)	391, 972
BslFI	GGGAC	3 cut(s)	38, 120, 697
BslI	CCNNNNNNNGG	7 cut(s)	47, 304, 548, 971, 1182, 1352, 1480
BsmAI	GTCTC	1 cut(s)	873
BsmBI	CGTCTC	1 cut(s)	873
BsmFI	GGGAC	3 cut(s)	38, 120, 697
BsnI	GGCC	4 cut(s)	390, 653, 1224, 1270
BsoBI	CYCGRG	1 cut(s)	1180
Bsp1286I	GDGCHC	1 cut(s)	1206
Bsp1720I	GCTNAGC	1 cut(s)	432
Bsp19I	CCATGG	1 cut(s)	1279
BspACI	CCGC	9 cut(s)	109, 455, 605, 749, 825, 841, 894, 982, 1350
BspANI	GGCC	4 cut(s)	390, 653, 1224, 1270
BspCNI	CTCAG	4 cut(s)	89, 445, 490, 679
BspFNI	CGCG	2 cut(s)	109, 123
BspHI	TCATGA	1 cut(s)	1126
BspLI	GGNNCC	2 cut(s)	6, 168
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	5 cut(s)	12, 346, 465, 999, 1394
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	971
BsrI	ACTGG	5 cut(s)	52, 308, 553, 1407, 1546
BssAI	RCCGGY	1 cut(s)	971
BssECI	CCNNGG	3 cut(s)	30, 1279, 1514
BssT1I	CCWWGG	1 cut(s)	1279
Bst2UI	CCWGG	5 cut(s)	31, 341, 753, 1347, 1515
Bst4CI	ACNGT	5 cut(s)	171, 555, 774, 1058, 1581
BstAPI	GCANNNNNTGC	3 cut(s)	277, 905, 1083
BstC8I	GCNNGC	3 cut(s)	973, 980, 1272
BstDEI	CTNAG	4 cut(s)	76, 432, 477, 687
BstDSI	CCRYGG	1 cut(s)	1279
BstENI	CCTNNNNNAGG	2 cut(s)	1180, 1350
BstF5I	GGATG	6 cut(s)	82, 168, 313, 730, 850, 864
BstFNI	CGCG	2 cut(s)	109, 123
BstHHI	GCGC	1 cut(s)	632
BstMAI	GTCTC	1 cut(s)	873
BstMWI	GCNNNNNNNGC	6 cut(s)	277, 442, 650, 905, 1083, 1201
BstNI	CCWGG	5 cut(s)	31, 341, 753, 1347, 1515
BstNSI	RCATGY	2 cut(s)	380, 695
BstSCI	CCNGG	5 cut(s)	29, 339, 751, 1345, 1513
BstSFI	CTRYAG	2 cut(s)	489, 588
BstSLI	GKGCMC	1 cut(s)	1206
BstUI	CGCG	2 cut(s)	109, 123
BstV2I	GAAGAC	2 cut(s)	494, 1022
BstX2I	RGATCY	4 cut(s)	4, 351, 457, 1114
BstYI	RGATCY	4 cut(s)	4, 351, 457, 1114
BsuRI	GGCC	4 cut(s)	390, 653, 1224, 1270
BtgI	CCRYGG	1 cut(s)	1279
BtrI	CACGTC	1 cut(s)	1381
BtsCI	GGATG	6 cut(s)	82, 168, 313, 730, 850, 864
BtsI	GCAGTG	2 cut(s)	1297, 1338
BtsIMutI	CAGTG	5 cut(s)	45, 1054, 1297, 1333, 1338
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	973, 980, 1272
CciI	TCATGA	1 cut(s)	1126
CfoI	GCGC	1 cut(s)	632
Cfr10I	RCCGGY	1 cut(s)	971
Cfr13I	GGNCC	2 cut(s)	1259, 1268
CseI	GACGC	1 cut(s)	1287
Csp6I	GTAC	2 cut(s)	886, 1143
CspCI	CAANNNNNGTGG	2 cut(s)	107, 142
CviQI	GTAC	2 cut(s)	886, 1143
DdeI	CTNAG	4 cut(s)	76, 432, 477, 687
EaeI	YGGCCR	1 cut(s)	388
EciI	GGCGGA	2 cut(s)	738, 1365
Eco130I	CCWWGG	1 cut(s)	1279
Eco47I	GGWCC	1 cut(s)	1259
Eco57I	CTGAAG	2 cut(s)	347, 1309
Eco88I	CYCGRG	1 cut(s)	1180
EcoNI	CCTNNNNNAGG	2 cut(s)	1180, 1350
EcoO109I	RGGNCCY	1 cut(s)	1259
EcoRII	CCWGG	5 cut(s)	29, 339, 751, 1345, 1513
EcoT14I	CCWWGG	1 cut(s)	1279
EcoT22I	ATGCAT	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	1279
Esp3I	CGTCTC	1 cut(s)	873
FalI	AAGNNNNNCTT	6 cut(s)	777, 809, 1057, 1089, 1179, 1211
FaqI	GGGAC	3 cut(s)	38, 120, 697
FauI	CCCGC	2 cut(s)	598, 834
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	6 cut(s)	69, 175, 320, 737, 857, 871
FspBI	CTAG	2 cut(s)	407, 1265
GlaI	GCGC	1 cut(s)	631
GsuI	CTGGAG	1 cut(s)	1563
HaeIII	GGCC	4 cut(s)	390, 653, 1224, 1270
HapII	CCGG	2 cut(s)	391, 972
HgaI	GACGC	1 cut(s)	1287
HhaI	GCGC	1 cut(s)	632
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HindIII	AAGCTT	1 cut(s)	1193
HinfI	GANTC	7 cut(s)	37, 834, 923, 1036, 1470, 1484, 1553
HpaII	CCGG	2 cut(s)	391, 972
HphI	GGTGA	2 cut(s)	749, 1562
Hpy188I	TCNGA	6 cut(s)	79, 199, 934, 1119, 1404, 1489
Hpy188III	TCNNGA	9 cut(s)	178, 248, 254, 365, 1033, 1093, 1127, 1180, 1457
Hpy99I	CGWCG	1 cut(s)	322
HpyCH4III	ACNGT	5 cut(s)	171, 555, 774, 1058, 1581
HpyCH4IV	ACGT	3 cut(s)	209, 320, 1380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	277, 442, 650, 905, 1083, 1201
HpyF3I	CTNAG	4 cut(s)	76, 432, 477, 687
HpySE526I	ACGT	3 cut(s)	209, 320, 1380
HspAI	GCGC	1 cut(s)	630
KroI	GCCGGC	1 cut(s)	971
KroNI	GCCGGC	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	646
LmnI	GCTCC	2 cut(s)	1340, 1348
LweI	GCATC	9 cut(s)	124, 258, 298, 592, 606, 715, 835, 849, 1073
MaeI	CTAG	2 cut(s)	407, 1265
MaeII	ACGT	3 cut(s)	209, 320, 1380
MaeIII	GTNAC	5 cut(s)	58, 210, 1058, 1067, 1409
MboII	GAAGA	5 cut(s)	494, 710, 797, 1027, 1562
MflI	RGATCY	4 cut(s)	4, 351, 457, 1114
MhlI	GDGCHC	1 cut(s)	1206
MlyI	GAGTC	2 cut(s)	1464, 1562
MmeI	TCCRAC	2 cut(s)	1291, 1427
Mph1103I	ATGCAT	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	971
MseI	TTAA	3 cut(s)	612, 624, 854
MslI	CAYNNNNRTG	2 cut(s)	813, 1379
MspI	CCGG	2 cut(s)	391, 972
MspR9I	CCNGG	5 cut(s)	31, 341, 753, 1347, 1515
MvaI	CCWGG	5 cut(s)	31, 341, 753, 1347, 1515
MvnI	CGCG	2 cut(s)	109, 123
MwoI	GCNNNNNNNGC	6 cut(s)	277, 442, 650, 905, 1083, 1201
NaeI	GCCGGC	1 cut(s)	973
NcoI	CCATGG	1 cut(s)	1279
NgoMIV	GCCGGC	1 cut(s)	971
NlaIV	GGNNCC	2 cut(s)	6, 168
NmuCI	GTSAC	3 cut(s)	58, 210, 1058
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	2 cut(s)	380, 695
OliI	CACNNNNGTG	1 cut(s)	813
PaeR7I	CTCGAG	1 cut(s)	1180
PagI	TCATGA	1 cut(s)	1126
PdiI	GCCGGC	1 cut(s)	973
PfeI	GAWTC	5 cut(s)	37, 834, 923, 1036, 1484
PfoI	TCCNGGA	1 cut(s)	339
PleI	GAGTC	2 cut(s)	1464, 1561
PpsI	GAGTC	2 cut(s)	1464, 1561
PpuMI	RGGWCCY	1 cut(s)	1259
PshBI	ATTAAT	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	1259
Psp6I	CCWGG	5 cut(s)	29, 339, 751, 1345, 1513
PspGI	CCWGG	5 cut(s)	29, 339, 751, 1345, 1513
PspN4I	GGNNCC	2 cut(s)	6, 168
PspPI	GGNCC	2 cut(s)	1259, 1268
PspPPI	RGGWCCY	1 cut(s)	1259
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	4 cut(s)	4, 351, 457, 1114
RsaI	GTAC	2 cut(s)	887, 1144
RsaNI	GTAC	2 cut(s)	886, 1143
RseI	CAYNNNNRTG	2 cut(s)	813, 1379
SaqAI	TTAA	3 cut(s)	612, 624, 854
Sau96I	GGNCC	2 cut(s)	1259, 1268
SchI	GAGTC	2 cut(s)	1464, 1562
ScrFI	CCNGG	5 cut(s)	31, 341, 753, 1347, 1515
SduI	GDGCHC	1 cut(s)	1206
SfaNI	GCATC	9 cut(s)	124, 258, 298, 592, 606, 715, 835, 849, 1073
SfcI	CTRYAG	2 cut(s)	489, 588
Sfr274I	CTCGAG	1 cut(s)	1180
SinI	GGWCC	1 cut(s)	1259
SlaI	CTCGAG	1 cut(s)	1180
SmiMI	CAYNNNNRTG	2 cut(s)	813, 1379
SmlI	CTYRAG	1 cut(s)	1180
SmoI	CTYRAG	1 cut(s)	1180
SsiI	CCGC	9 cut(s)	109, 455, 605, 749, 825, 841, 894, 982, 1350
SspMI	CTAG	2 cut(s)	407, 1265
StyD4I	CCNGG	5 cut(s)	29, 339, 751, 1345, 1513
StyI	CCWWGG	1 cut(s)	1279
TaaI	ACNGT	5 cut(s)	171, 555, 774, 1058, 1581
TaiI	ACGT	3 cut(s)	212, 323, 1383
TaqI	TCGA	6 cut(s)	253, 1181, 1245, 1468, 1556, 1576
TatI	WGTACW	1 cut(s)	885
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	5 cut(s)	37, 834, 923, 1036, 1484
Tru1I	TTAA	3 cut(s)	612, 624, 854
Tru9I	TTAA	3 cut(s)	612, 624, 854
TscAI	CASTG	5 cut(s)	52, 1061, 1297, 1333, 1345
TseFI	GTSAC	3 cut(s)	58, 210, 1058
Tsp45I	GTSAC	3 cut(s)	58, 210, 1058
TspDTI	ATGAA	8 cut(s)	168, 435, 720, 747, 777, 948, 1263, 1485
TspGWI	ACGGA	2 cut(s)	1093, 1160
TspRI	CASTG	5 cut(s)	52, 1061, 1297, 1333, 1345
VpaK11BI	GGWCC	1 cut(s)	1259
VspI	ATTAAT	1 cut(s)	624
XagI	CCTNNNNNAGG	2 cut(s)	1180, 1350
XapI	RAATTY	5 cut(s)	243, 765, 850, 1426, 1558
XceI	RCATGY	2 cut(s)	380, 695
XhoI	CTCGAG	1 cut(s)	1180
XspI	CTAG	2 cut(s)	407, 1265
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.